Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01G120024.5 |
| Conread position: | 377-724 |
| Cow position: | chr23:24639734-24640081 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 21 |
| Conread position: | 377-807 |
| Cow position: | chr23:24626322-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 20 |
| Conread position: | 377-960 |
| Cow position: | chr23:24522801-24522224 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 12 |
| Conread position: | 389-693 |
| Cow position: | chr23:24546967-24546664 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 44, 9 |
| Conread position: | 389-789 |
| Cow position: | chr23:24560527-24560128 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 11 |
| Conread position: | 389-839 |
| Cow position: | chr23:24639663-24640112 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 389-872 |
| Cow position: | chr23:24560611-24560129 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 11 |
| Conread position: | 389-872 |
| Cow position: | chr23:25626561-25627040 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 389-944 |
| Cow position: | chr23:24536018-24535464 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 10 |
| Conread position: | 389-947 |
| Cow position: | chr23:25660178-25660735 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 8 |
| Conread position: | 389-955 |
| Cow position: | chr23:24639243-24639808 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 8 |
| Conread position: | 389-961 |
| Cow position: | chr23:24560863-24560292 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 8 |
| Conread position: | 391-777 |
| Cow position: | chr23:25724099-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 256 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 16, 8 |
| Conread position: | 391-861 |
| Cow position: | chr23:24654061-24654525 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 299 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 40, 47 |
| Conread position: | 391-967 |
| Cow position: | chr23:24547302-24546726 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 44 |
| Conread position: | 397-944 |
| Cow position: | chr23:25626400-25626944 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 0 |
| Conread position: | 399-945 |
| Cow position: | chr23:24547210-24546664 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 399-946 |
| Cow position: | chr23:24560686-24560139 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 44 |
| Conread position: | 400-873 |
| Cow position: | chr23:24547125-24546652 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 49 |
| Conread position: | 408-883 |
| Cow position: | chr23:24626269-24626744 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 56 |
| Conread position: | 437-875 |
| Cow position: | chr23:24639626-24640064 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 438-967 |
| Cow position: | chr23:24536054-24535525 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 189 |
| Conread position: | 439-967 |
| Cow position: | chr23:25660143-25660671 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 243 |
| Conread position: | 442-961 |
| Cow position: | chr23:25626109-25626625 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 478, 0 |
| Conread position: | 456-693 |
| Cow position: | chr23:25698311-25698074 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 457-970 |
| Cow position: | chr23:24560880-24560367 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 458-960 |
| Cow position: | chr23:24639227-24639728 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 154 |
| Conread position: | 462-764 |
| Cow position: | chr23:24522469-24522167 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 204 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-777 |
| Cow position: | chr23:24521963-24521653 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 192, 234 |
| Conread position: | 462-789 |
| Cow position: | chr23:25626714-25627041 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 243 |
| Conread position: | 462-790 |
| Cow position: | chr23:25660418-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 220 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-810 |
| Cow position: | chr23:24654048-24654396 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-905 |
| Cow position: | chr23:25626045-25626488 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 280 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 396, 390 |
| Conread position: | 462-944 |
| Cow position: | chr23:24547315-24546833 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-960 |
| Cow position: | chr23:24639483-24639980 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 20 |
| Conread position: | 462-971 |
| Cow position: | chr23:25625961-25626470 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 463-861 |
| Cow position: | chr23:25724111-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 291 |
| Conread position: | 463-945 |
| Cow position: | chr23:25698556-25698074 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 198 |
| Conread position: | 467-960 |
| Cow position: | chr23:24639572-24640064 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 15 |
| Conread position: | 467-967 |
| Cow position: | chr23:24639404-24639904 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 345, 354 |
| Conread position: | 467-967 |
| Cow position: | chr23:25698636-25698136 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 25 |
| Conread position: | 468-841 |
| Cow position: | chr23:24522547-24522174 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 469-824 |
| Cow position: | chr23:24535771-24535415 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 235 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 346, 319 |
| Conread position: | 469-946 |
| Cow position: | chr23:25626556-25627030 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 469-961 |
| Cow position: | chr23:24560700-24560208 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 472-961 |
| Cow position: | chr23:25626391-25626877 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 0 |
| Conread position: | 492-967 |
| Cow position: | chr23:25698695-25698220 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 302 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 79, 86 |
| Conread position: | 493-907 |
| Cow position: | chr23:24522606-24522192 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 497-953 |
| Cow position: | chr23:24626274-24626730 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 422, 426 |
| Conread position: | 510-961 |
| Cow position: | chr23:24536066-24535615 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 286 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 308, 314 |
| Conread position: | 522-967 |
| Cow position: | chr23:24560897-24560454 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 397, 22 |
| Conread position: | 538-818 |
| Cow position: | chr23:24521971-24521691 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 52, 58 |
| Conread position: | 540-863 |
| Cow position: | chr23:24654042-24654365 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 541-960 |
| Cow position: | chr23:24547320-24546902 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 416, 0 |
| Conread position: | 577-971 |
| Cow position: | chr23:24626270-24626664 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 27 |
| Conread position: | 594-961 |
| Cow position: | chr23:24560911-24560544 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 243 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 330, 322 |
| Conread position: | 595-946 |
| Cow position: | chr23:25698676-25698325 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 60, 67 |
| Conread position: | 602-945 |
| Cow position: | chr23:25724056-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 313 |
| Conread position: | 612-947 |
| Cow position: | chr23:24654029-24654365 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 613-961 |
| Cow position: | chr23:25724129-25723782 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 232 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 45, 33 |
| Conread position: | 630-967 |
| Cow position: | chr23:24547315-24546978 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 224 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 631-967 |
| Cow position: | chr23:24639232-24639568 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 182, 193 |
| Conread position: | 694-946 |
| Cow position: | chr23:24521983-24521730 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 708-965 |
| Cow position: | chr23:24654042-24654299 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 709-961 |
| Cow position: | chr23:24547320-24547068 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 210, 214 |
| Conread position: | 728-967 |
| Cow position: | chr23:25724099-25723859 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 743-970 |
| Cow position: | chr23:24626268-24626495 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 29 |
Show alignments to all cow chromosomes.