Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01G120024.5 |
| Conread position: | 380-961 |
| Cow position: | chr28:7757516-7758097 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 53 |
| Conread position: | 389-825 |
| Cow position: | chr28:9298760-9299192 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 269 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 33, 8 |
| Conread position: | 389-862 |
| Cow position: | chr28:7757862-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 11 |
| Conread position: | 389-959 |
| Cow position: | chr28:9253045-9253614 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 8 |
| Conread position: | 389-961 |
| Cow position: | chr28:7757610-7758181 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 11 |
| Conread position: | 389-970 |
| Cow position: | chr28:34695938-34696518 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 541, 9 |
| Conread position: | 390-617 |
| Cow position: | chr28:34696359-34696585 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 36, 8 |
| Conread position: | 391-946 |
| Cow position: | chr28:34696023-34696578 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 301, 291 |
| Conread position: | 391-960 |
| Cow position: | chr28:34695855-34696423 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 27 |
| Conread position: | 391-967 |
| Cow position: | chr28:9252962-9253538 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 46 |
| Conread position: | 393-792 |
| Cow position: | chr28:33210257-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 45 |
| Conread position: | 398-884 |
| Cow position: | chr28:11333851-11333371 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 298 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 28, 40 |
| Conread position: | 399-955 |
| Cow position: | chr28:9298936-9299476 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 344 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 34, 50 |
| Conread position: | 431-719 |
| Cow position: | chr28:7810659-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 432-802 |
| Cow position: | chr28:7810574-7810945 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 242 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 10, 234 |
| Conread position: | 432-940 |
| Cow position: | chr28:7810333-7810831 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 5 |
| Conread position: | 432-960 |
| Cow position: | chr28:11334152-11333626 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 5 |
| Conread position: | 436-704 |
| Cow position: | chr28:7758564-7758831 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 40, 55 |
| Conread position: | 441-744 |
| Cow position: | chr28:9290412-9290714 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 441-820 |
| Cow position: | chr28:34673516-34673896 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 19, 23 |
| Conread position: | 441-845 |
| Cow position: | chr28:7758485-7758889 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 256 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 312, 292 |
| Conread position: | 451-959 |
| Cow position: | chr28:7758327-7758834 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 361, 379 |
| Conread position: | 452-872 |
| Cow position: | chr28:9298737-9299155 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 271 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 12, 77 |
| Conread position: | 459-961 |
| Cow position: | chr28:34695839-34696340 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 141 |
| Conread position: | 462-839 |
| Cow position: | chr28:33210242-33210620 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 0 |
| Conread position: | 462-905 |
| Cow position: | chr28:9299081-9299510 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 198, 105 |
| Conread position: | 462-947 |
| Cow position: | chr28:7757514-7757999 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-961 |
| Cow position: | chr28:7757430-7757929 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 20 |
| Conread position: | 462-961 |
| Cow position: | chr28:7810446-7810936 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 304 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 462-970 |
| Cow position: | chr28:7757766-7758274 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 382, 372 |
| Conread position: | 463-961 |
| Cow position: | chr28:34673370-34673868 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 311 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 307, 303 |
| Conread position: | 466-961 |
| Cow position: | chr28:7757188-7757677 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 310 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 45, 35 |
| Conread position: | 467-823 |
| Cow position: | chr28:34679541-34679182 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 33, 15 |
| Conread position: | 467-878 |
| Cow position: | chr28:7810526-7810937 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 260 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 467-961 |
| Cow position: | chr28:9252788-9253280 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 306 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 156, 103 |
| Conread position: | 467-970 |
| Cow position: | chr28:7810283-7810777 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 0 |
| Conread position: | 468-875 |
| Cow position: | chr28:9290272-9290677 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 468-946 |
| Cow position: | chr28:7757856-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 468-955 |
| Cow position: | chr28:11333865-11333384 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 344, 352 |
| Conread position: | 468-961 |
| Cow position: | chr28:7757352-7757845 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 34 |
| Conread position: | 469-822 |
| Cow position: | chr28:9290357-9290708 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 472-940 |
| Cow position: | chr28:34673463-34673931 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 289 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 19, 32 |
| Conread position: | 502-960 |
| Cow position: | chr28:9290142-9290593 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 502-961 |
| Cow position: | chr28:11334167-11333708 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 282 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 178, 164 |
| Conread position: | 506-940 |
| Cow position: | chr28:9299279-9299710 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 272 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 366, 291 |
| Conread position: | 511-961 |
| Cow position: | chr28:9290067-9290511 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 229, 141 |
| Conread position: | 512-947 |
| Cow position: | chr28:9289898-9290331 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 274 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 5, 13 |
| Conread position: | 519-967 |
| Cow position: | chr28:34695815-34696263 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 165 |
| Conread position: | 523-907 |
| Cow position: | chr28:9290245-9290625 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 526-971 |
| Cow position: | chr28:9298561-9299003 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 285 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 40, 104 |
| Conread position: | 528-869 |
| Cow position: | chr28:9299217-9299558 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 284, 306 |
| Conread position: | 528-932 |
| Cow position: | chr28:33210223-33210629 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 397 |
| Conread position: | 530-961 |
| Cow position: | chr28:34673353-34673784 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 275 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 215, 222 |
| Conread position: | 534-947 |
| Cow position: | chr28:7757334-7757747 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 616-967 |
| Cow position: | chr28:33210228-33210580 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 214 |
| Conread position: | 701-967 |
| Cow position: | chr28:34673356-34673622 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 46, 55 |
Show alignments to all cow chromosomes.