Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01G120024.5 |
| Conread position: | 355-861 |
| Cow position: | chr3:20194803-20195303 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 312 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 157, 8 |
| Conread position: | 380-961 |
| Cow position: | chr3:68027108-68027689 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 55 |
| Conread position: | 383-907 |
| Cow position: | chr3:68045703-68046228 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 61 |
| Conread position: | 389-899 |
| Cow position: | chr3:62742888-62743375 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 316 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 35, 11 |
| Conread position: | 389-961 |
| Cow position: | chr3:62722215-62721645 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 8 |
| Conread position: | 390-906 |
| Cow position: | chr3:20194749-20195264 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 424, 8 |
| Conread position: | 391-955 |
| Cow position: | chr3:62742306-62742864 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 334 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 399-946 |
| Cow position: | chr3:68045804-68046351 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 400-917 |
| Cow position: | chr3:62742482-62742995 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 43 |
| Conread position: | 441-779 |
| Cow position: | chr3:62721912-62721574 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 41 |
| Conread position: | 455-940 |
| Cow position: | chr3:77351066-77350591 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 301 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 88, 27 |
| Conread position: | 458-791 |
| Cow position: | chr3:62742705-62743032 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 179, 42 |
| Conread position: | 458-863 |
| Cow position: | chr3:62721979-62721574 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 209 |
| Conread position: | 459-914 |
| Cow position: | chr3:68045696-68046151 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-844 |
| Cow position: | chr3:68027358-68027740 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 247 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-960 |
| Cow position: | chr3:62722227-62721730 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 493, 0 |
| Conread position: | 462-960 |
| Cow position: | chr3:62722311-62721815 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 377, 362 |
| Conread position: | 462-967 |
| Cow position: | chr3:62742293-62742792 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 310 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 463-960 |
| Cow position: | chr3:20194737-20195233 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 357, 348 |
| Conread position: | 467-835 |
| Cow position: | chr3:62743111-62743478 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 361, 0 |
| Conread position: | 468-873 |
| Cow position: | chr3:62743033-62743433 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 258 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 468-947 |
| Cow position: | chr3:62722053-62721574 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 469-914 |
| Cow position: | chr3:62742883-62743306 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 284 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 470-971 |
| Cow position: | chr3:62722387-62721886 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 57 |
| Conread position: | 471-957 |
| Cow position: | chr3:68027031-68027517 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 302 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 32, 21 |
| Conread position: | 496-841 |
| Cow position: | chr3:62742659-62743003 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 232 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 227, 91 |
| Conread position: | 501-961 |
| Cow position: | chr3:68045654-68046114 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 253 |
| Conread position: | 511-905 |
| Cow position: | chr3:68045580-68045974 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 256 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 331, 322 |
| Conread position: | 530-917 |
| Cow position: | chr3:68027342-68027729 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 55, 43 |
| Conread position: | 532-755 |
| Cow position: | chr3:20194446-20194669 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 537-960 |
| Cow position: | chr3:20194727-20195149 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 420, 0 |
| Conread position: | 540-905 |
| Cow position: | chr3:68027016-68027381 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 236 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 619-961 |
| Cow position: | chr3:68045605-68045946 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 53, 7 |
| Conread position: | 695-917 |
| Cow position: | chr3:20194441-20194663 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 119, 126 |
| Conread position: | 708-961 |
| Cow position: | chr3:68027016-68027269 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 721-972 |
| Cow position: | chr3:20194743-20194994 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 198, 202 |
Show alignments to all cow chromosomes.