Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01G120024.5 |
| Conread position: | 384-967 |
| Cow position: | chr6:49428415-49428999 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 53 |
| Conread position: | 389-820 |
| Cow position: | chr6:49396571-49397001 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 281 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 33, 9 |
| Conread position: | 389-947 |
| Cow position: | chr6:49396235-49396792 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 9 |
| Conread position: | 390-750 |
| Cow position: | chr6:49429179-49429536 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 222 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 46, 9 |
| Conread position: | 390-868 |
| Cow position: | chr6:49429011-49429488 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 8 |
| Conread position: | 390-960 |
| Cow position: | chr6:49428255-49428823 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 8 |
| Conread position: | 390-960 |
| Cow position: | chr6:49428507-49429075 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 8 |
| Conread position: | 390-961 |
| Cow position: | chr6:49428759-49429329 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 367, 8 |
| Conread position: | 390-961 |
| Cow position: | chr6:49428843-49429413 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 8 |
| Conread position: | 390-967 |
| Cow position: | chr6:49428339-49428915 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 7 |
| Conread position: | 391-917 |
| Cow position: | chr6:49428927-49429453 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 46 |
| Conread position: | 391-946 |
| Cow position: | chr6:49396404-49396959 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 160 |
| Conread position: | 391-961 |
| Cow position: | chr6:49340683-49341253 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 47 |
| Conread position: | 391-961 |
| Cow position: | chr6:49340851-49341421 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 47 |
| Conread position: | 391-961 |
| Cow position: | chr6:49361958-49362516 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 344 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 51, 76 |
| Conread position: | 391-967 |
| Cow position: | chr6:49428675-49429251 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 45 |
| Conread position: | 398-961 |
| Cow position: | chr6:49396081-49396638 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 24 |
| Conread position: | 399-656 |
| Cow position: | chr6:49341195-49341451 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 25, 39 |
| Conread position: | 399-878 |
| Cow position: | chr6:49340943-49341422 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 34 |
| Conread position: | 399-965 |
| Cow position: | chr6:49340439-49341005 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 36 |
| Conread position: | 400-961 |
| Cow position: | chr6:49340524-49341085 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 38 |
| Conread position: | 400-961 |
| Cow position: | chr6:49340776-49341337 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 43 |
| Conread position: | 432-828 |
| Cow position: | chr6:49341061-49341455 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 435-814 |
| Cow position: | chr6:49429139-49429516 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 355, 0 |
| Conread position: | 435-906 |
| Cow position: | chr6:49362170-49362629 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 300 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 157, 0 |
| Conread position: | 435-961 |
| Cow position: | chr6:49396364-49396890 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 490, 497 |
| Conread position: | 436-967 |
| Cow position: | chr6:49428216-49428747 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 201 |
| Conread position: | 439-960 |
| Cow position: | chr6:49395786-49396300 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 318 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 375, 382 |
| Conread position: | 442-971 |
| Cow position: | chr6:49340650-49341179 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 66 |
| Conread position: | 454-967 |
| Cow position: | chr6:49395885-49396392 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 321 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 213, 226 |
| Conread position: | 462-961 |
| Cow position: | chr6:49340418-49340917 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 472-947 |
| Cow position: | chr6:49396233-49396708 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 285 |
| Conread position: | 492-960 |
| Cow position: | chr6:49340364-49340831 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 463, 0 |
| Conread position: | 523-812 |
| Cow position: | chr6:49362654-49362947 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 213, 0 |
| Conread position: | 602-965 |
| Cow position: | chr6:49340390-49340753 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 686-970 |
| Cow position: | chr6:49340390-49340674 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 198 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 276, 271 |
Show alignments to all cow chromosomes.