Cow genome map

Conread name: Ss1.1-LyN1-MLN01G120024.5

Conread position: 376-955
Cow position: chr7:3180045-3180624 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 67

Conread position: 380-955
Cow position: chr7:1014457-1015026 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 20

Conread position: 389-783
Cow position: chr7:11600825-11600432 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 242
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 44, 10

Conread position: 389-843
Cow position: chr7:18390356-18390809 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 10

Conread position: 390-968
Cow position: chr7:3180312-3180887 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 9

Conread position: 391-954
Cow position: chr7:28846450-28847013 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 54

Conread position: 399-905
Cow position: chr7:11601068-11600562 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 50

Conread position: 399-961
Cow position: chr7:1014806-1015368 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 44

Conread position: 399-964
Cow position: chr7:12293299-12293864 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 338
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 24, 39

Conread position: 399-971
Cow position: chr7:11601152-11600580 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 44

Conread position: 400-878
Cow position: chr7:1014724-1015201 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 9

Conread position: 400-961
Cow position: chr7:3179817-3180378 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 37

Conread position: 429-821
Cow position: chr7:8325302-8325694 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 258
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 82, 60

Conread position: 431-823
Cow position: chr7:8277412-8277803 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 240
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 160, 11

Conread position: 431-907
Cow position: chr7:8325641-8326116 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 298
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 163, 6

Conread position: 431-907
Cow position: chr7:11434748-11434280 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 308
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 165, 6

Conread position: 435-961
Cow position: chr7:42878869-42878343 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 438-977
Cow position: chr7:12293422-12293962 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 318
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 498, 502

Conread position: 441-821
Cow position: chr7:8243212-8243592 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 238
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 155, 134

Conread position: 441-907
Cow position: chr7:8277925-8278391 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 306
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 61, 41

Conread position: 441-963
Cow position: chr7:28846584-28847106 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 309
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 307, 300

Conread position: 442-789
Cow position: chr7:42878610-42878263 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 227
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 442-907
Cow position: chr7:3180027-3180492 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 133

Conread position: 442-944
Cow position: chr7:42878778-42878276 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 322, 316

Conread position: 451-821
Cow position: chr7:1438336-1438706 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 230
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 451-821
Cow position: chr7:8324820-8325190 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 257
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 53, 46

Conread position: 451-829
Cow position: chr7:1015109-1015490 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 249
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 8, 127

Conread position: 451-955
Cow position: chr7:1014690-1015194 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 300

Conread position: 451-955
Cow position: chr7:3179700-3180204 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 212

Conread position: 452-821
Cow position: chr7:8243390-8243759 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 244
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 50, 37

Conread position: 455-955
Cow position: chr7:3179956-3180456 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 456-961
Cow position: chr7:1014281-1014779 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 307
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 223, 208

Conread position: 458-823
Cow position: chr7:8243061-8243425 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 229
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 117, 121

Conread position: 458-955
Cow position: chr7:1439480-1439977 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 314
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 214, 108

Conread position: 462-841
Cow position: chr7:1015037-1015416 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 134

Conread position: 462-860
Cow position: chr7:11600837-11600439 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 32

Conread position: 462-907
Cow position: chr7:8277358-8277803 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 278
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 50, 39

Conread position: 462-907
Cow position: chr7:8277778-8278223 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 285
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 126, 111

Conread position: 462-920
Cow position: chr7:18390344-18390803 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 456, 0

Conread position: 462-955
Cow position: chr7:3179795-3180288 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 116

Conread position: 462-957
Cow position: chr7:1439739-1440231 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 301
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 50, 21

Conread position: 462-961
Cow position: chr7:1014371-1014863 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 308
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 279, 0

Conread position: 462-967
Cow position: chr7:1439650-1440157 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 315
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 39, 119

Conread position: 462-967
Cow position: chr7:11601173-11600668 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 40

Conread position: 463-932
Cow position: chr7:28846438-28846907 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 284
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 463-955
Cow position: chr7:42879177-42878685 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 39

Conread position: 467-946
Cow position: chr7:1014958-1015437 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 297

Conread position: 468-947
Cow position: chr7:42879004-42878525 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 468-955
Cow position: chr7:42879424-42878937 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 77

Conread position: 468-961
Cow position: chr7:42879088-42878595 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 469-947
Cow position: chr7:3180306-3180784 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 195

Conread position: 469-955
Cow position: chr7:42878919-42878433 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 189

Conread position: 469-961
Cow position: chr7:18390267-18390759 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 470-905
Cow position: chr7:8278122-8278555 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 274
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 125, 111

Conread position: 471-961
Cow position: chr7:42879253-42878763 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 472-960
Cow position: chr7:18390186-18390673 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 485, 0

Conread position: 478-908
Cow position: chr7:1014218-1014649 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 277
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 5, 417

Conread position: 493-944
Cow position: chr7:11600890-11600439 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 494-961
Cow position: chr7:1014650-1015116 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 7

Conread position: 496-960
Cow position: chr7:3180249-3180712 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 459, 0

Conread position: 497-967
Cow position: chr7:42879312-42878841 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 501-967
Cow position: chr7:18390047-18390513 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 87

Conread position: 511-824
Cow position: chr7:8325804-8326117 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 217
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 158, 169

Conread position: 511-878
Cow position: chr7:1438312-1438679 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 223
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 319, 312

Conread position: 511-906
Cow position: chr7:8243617-8244010 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 243
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 77, 65

Conread position: 511-907
Cow position: chr7:8277575-8277971 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 257
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 85, 69

Conread position: 511-907
Cow position: chr7:8324964-8325360 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 245
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 85, 64

Conread position: 511-961
Cow position: chr7:8277911-8278361 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 286
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 92, 74

Conread position: 511-967
Cow position: chr7:18390141-18390597 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 523-823
Cow position: chr7:8325312-8325612 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 205
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 53, 66

Conread position: 523-899
Cow position: chr7:8243210-8243585 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 240
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 59, 52

Conread position: 523-905
Cow position: chr7:1439882-1440263 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 243
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 67, 73

Conread position: 523-907
Cow position: chr7:8325144-8325528 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 248
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 78, 52

Conread position: 524-802
Cow position: chr7:11434824-11434546 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 190
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 52, 65

Conread position: 528-824
Cow position: chr7:8277256-8277552 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 197
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 62, 44

Conread position: 528-907
Cow position: chr7:8324729-8325108 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 256
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 82, 47

Conread position: 529-961
Cow position: chr7:11601190-11600759 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 428, 0

Conread position: 533-960
Cow position: chr7:18389995-18390421 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 270
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 422, 0

Conread position: 552-956
Cow position: chr7:12293284-12293688 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 247
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 597-822
Cow position: chr7:1439451-1439674 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 151
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 136, 0

Conread position: 599-955
Cow position: chr7:11601204-11600848 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 239
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 66, 59

Conread position: 603-974
Cow position: chr7:1014260-1014631 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 234
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 76, 64

Conread position: 607-961
Cow position: chr7:28846498-28846852 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 214
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 207, 223

Conread position: 679-961
Cow position: chr7:3179676-3179958 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 190
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 242, 236

Conread position: 681-957
Cow position: chr7:1439451-1439728 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 183
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 205, 151

Conread position: 683-961
Cow position: chr7:11601204-11600926 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 180
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.