Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01G120024.5 |
| Conread position: | 389-811 |
| Cow position: | chrX:13826586-13826165 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 389-872 |
| Cow position: | chrX:25324721-25324239 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 306 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 44, 10 |
| Conread position: | 389-960 |
| Cow position: | chrX:25325561-25324992 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 389-967 |
| Cow position: | chrX:25309748-25310325 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 8 |
| Conread position: | 389-971 |
| Cow position: | chrX:25324973-25324392 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 11 |
| Conread position: | 391-961 |
| Cow position: | chrX:25325056-25324486 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 212 |
| Conread position: | 399-971 |
| Cow position: | chrX:13826913-13826341 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 96 |
| Conread position: | 421-803 |
| Cow position: | chrX:25310200-25310581 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 255 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 235, 21 |
| Conread position: | 431-802 |
| Cow position: | chrX:29045024-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 432-955 |
| Cow position: | chrX:25310043-25310565 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 324 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 55, 5 |
| Conread position: | 434-955 |
| Cow position: | chrX:25309876-25310397 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 401 |
| Conread position: | 437-967 |
| Cow position: | chrX:13826791-13826261 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 493, 489 |
| Conread position: | 438-786 |
| Cow position: | chrX:14181232-14180884 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 271, 258 |
| Conread position: | 438-812 |
| Cow position: | chrX:14181316-14180942 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 438-917 |
| Cow position: | chrX:13826706-13826227 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 437, 426 |
| Conread position: | 441-836 |
| Cow position: | chrX:25324586-25324195 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 257 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 46, 37 |
| Conread position: | 441-872 |
| Cow position: | chrX:25310135-25310566 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 312 |
| Conread position: | 441-964 |
| Cow position: | chrX:25325258-25324735 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 419, 414 |
| Conread position: | 445-961 |
| Cow position: | chrX:14181646-14181130 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 300 |
| Conread position: | 462-821 |
| Cow position: | chrX:25309736-25310095 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-959 |
| Cow position: | chrX:25324817-25324320 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 398, 393 |
| Conread position: | 462-960 |
| Cow position: | chrX:25325069-25324571 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 225 |
| Conread position: | 462-961 |
| Cow position: | chrX:25325153-25324655 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 51 |
| Conread position: | 462-970 |
| Cow position: | chrX:25325321-25324813 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 216 |
| Conread position: | 463-875 |
| Cow position: | chrX:13826597-13826185 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 169 |
| Conread position: | 463-906 |
| Cow position: | chrX:14181543-14181100 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 278 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 110, 125 |
| Conread position: | 463-962 |
| Cow position: | chrX:14181375-14180875 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 28 |
| Conread position: | 463-971 |
| Cow position: | chrX:29045329-29044821 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 467-874 |
| Cow position: | chrX:29045808-29045403 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 21 |
| Conread position: | 468-940 |
| Cow position: | chrX:25324727-25324255 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 303 |
| Conread position: | 468-961 |
| Cow position: | chrX:25309994-25310487 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 285 |
| Conread position: | 468-961 |
| Cow position: | chrX:25325735-25325242 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 30 |
| Conread position: | 470-947 |
| Cow position: | chrX:25325565-25325088 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 271 |
| Conread position: | 470-971 |
| Cow position: | chrX:29045238-29044737 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 471-961 |
| Cow position: | chrX:29045153-29044663 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 472-821 |
| Cow position: | chrX:12627713-12628062 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 40, 23 |
| Conread position: | 472-960 |
| Cow position: | chrX:13826924-13826437 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 103 |
| Conread position: | 499-961 |
| Cow position: | chrX:25309689-25310151 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 331 |
| Conread position: | 509-824 |
| Cow position: | chrX:12627416-12627729 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 169, 74 |
| Conread position: | 510-955 |
| Cow position: | chrX:25325777-25325332 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 168 |
| Conread position: | 511-907 |
| Cow position: | chrX:12627334-12627728 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 244 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 60, 94 |
| Conread position: | 520-972 |
| Cow position: | chrX:14181402-14180950 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 524-971 |
| Cow position: | chrX:25325595-25325148 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 532-973 |
| Cow position: | chrX:13826948-13826507 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 23 |
| Conread position: | 535-967 |
| Cow position: | chrX:14181639-14181207 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 427, 422 |
| Conread position: | 561-961 |
| Cow position: | chrX:25309667-25310067 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 258 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 60, 66 |
| Conread position: | 602-875 |
| Cow position: | chrX:29045757-29045484 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 686-955 |
| Cow position: | chrX:29045757-29045488 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.