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Cow genome map

           
Conread name:
           
Ss1.1-LyN1-MLN01H050087.5
        

               
Conread position:
               
1-131
               

               
Cow position:
               
chrX:9855224-9855354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
51, 27
               

               
Conread position:
               
1-131
               

               
Cow position:
               
chrX:9954065-9954195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
49, 27
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chrX:26625751-26625577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
51, 89
               

               
Conread position:
               
1-176
               

               
Cow position:
               
chrX:27680318-27680500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
18, 89
               

               
Conread position:
               
1-179
               

               
Cow position:
               
chrX:2467805-2467989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
27, 54
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chrX:11856348-11856537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chrX:21004605-21004802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
17, 45
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chrX:47300980-47300781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
18, 72
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chrX:37910365-37910575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
31, 205
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chrX:15815006-15815212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
29, 74
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chrX:19690148-19690345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
51, 27
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chrX:7277835-7278044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
24, 74
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chrX:11082695-11082486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
51, 35
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chrX:10412066-10411847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
23, 85
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chrX:29120965-29121185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
27, 78
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chrX:17541883-17542099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
56, 197
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chrX:6690336-6690112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
22, 78
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chrX:5679646-5679421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
22, 74
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chrX:46433410-46433644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
31, 77
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chrX:6265680-6265444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
26, 92
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chrX:37836508-37836733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
31, 66
               

               
Conread position:
               
1-231
               

               
Cow position:
               
chrX:7710619-7710380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
31, 77
               

               
Conread position:
               
1-231
               

               
Cow position:
               
chrX:29549628-29549396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
22, 145
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chrX:878458-878218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chrX:8797172-8797411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
31, 135
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chrX:16348649-16348410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
31, 142
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chrX:33205045-33204808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
29, 74
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chrX:37129188-37129432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
32, 90
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chrX:43730299-43730061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
41, 72
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chrX:27119619-27119863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
29, 166
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chrX:42235609-42235357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
17, 94
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chrX:28134264-28134508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
29, 67
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chrX:32170966-32170712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
21, 79
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chrX:4043935-4043675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
58, 68
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chrX:16416431-16416688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
18, 100
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chrX:16575042-16575299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
43, 27
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chrX:31252337-31252598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
17, 78
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chrX:45968079-45968336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
169, 37
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chrX:24288006-24287740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
45, 72
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chrX:34662928-34662653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
27, 91
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chrX:47046587-47046308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
24, 66
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chrX:27946137-27945848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chrX:28878250-28877958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chrX:41068640-41068928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
29, 228
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chrX:47165964-47165676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
29, 9
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chrX:15596963-15597237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
169, 35
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chrX:22821969-22822264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 68
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chrX:1499586-1499865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
31, 80
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chrX:12309466-12309174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 89
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chrX:34238641-34238934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 22
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chrX:4768662-4768942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
20, 75
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chrX:10831574-10831267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chrX:31436397-31436683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
19, 74
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chrX:20882018-20881744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
31, 76
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chrX:13868622-13868923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 82
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chrX:27228047-27228348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 82
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chrX:48646678-48646390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
58, 35
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chrX:34543707-34544006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 27
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chrX:45875312-45875611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
33, 88
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chrX:7646175-7646459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
28, 81
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chrX:29601911-29601606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
27, 77
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chrX:26881649-26881338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
22, 101
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chrX:10516175-10516479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chrX:35268801-35269081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
167, 27
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chrX:6559526-6559230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 75
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chrX:34554645-34554950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
27, 59
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chrX:47873417-47873110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
29, 81
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chrX:4399048-4399346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
51, 87
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chrX:5638246-5637951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
10, 76
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chrX:16762690-16762996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
22, 220
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chrX:21593207-21593519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
29, 76
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chrX:27394101-27393790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
27, 66
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chrX:31442902-31442611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 48
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chrX:34315441-34315755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chrX:40680530-40680843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chrX:41027075-41027388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 93
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chrX:41238432-41238134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
31, 84
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chrX:42492594-42492293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 62
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chrX:44961668-44961983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chrX:47280013-47279708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
47, 72
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chrX:47484346-47484030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chrX:15007230-15006925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
28, 82
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chrX:40826832-40826517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
27, 76
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chrX:4296900-4296590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
29, 86
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chrX:7863647-7863345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
30, 54
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chrX:11844325-11844002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chrX:17231653-17231971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chrX:17949568-17949258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
27, 71
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chrX:23563871-23563556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
29, 77
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chrX:30962954-30962641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 66
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chrX:31949014-31948699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chrX:36975871-36976182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 90
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chrX:48010520-48010839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chrX:48071080-48071396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
29, 70
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chrX:5118583-5118263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
31, 50
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chrX:24365906-24365587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 97
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chrX:33654922-33654608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chrX:27446615-27446919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 54
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chrX:32330080-32330408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
27, 12
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chrX:12979908-12979598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
51, 27
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chrX:21327825-21328151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chrX:23514096-23513765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
29, 90
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chrX:37489647-37489967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
31, 56
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chrX:42855374-42855700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 93
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chrX:3579864-3580186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 45
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chrX:24457620-24457306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
123, 37
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chrX:4269142-4268828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 73
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chrX:4403234-4403561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
31, 55
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chrX:7178821-7179126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
17, 74
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chrX:11633599-11633926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 92
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chrX:15231738-15231416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chrX:27431995-27431682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
47, 231
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chrX:36356034-36356347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
29, 67
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chrX:5872240-5872574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 83
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chrX:20339970-20339653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 78
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chrX:27174915-27175241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 129
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chrX:41879013-41878695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 145
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chrX:44192524-44192200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 73
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chrX:45598682-45598363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
27, 68
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chrX:151824-152151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
29, 90
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chrX:12095854-12095524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chrX:22387323-22386996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
31, 68
               

               
Conread position:
               
1-323
               

               
Cow position:
               
chrX:25207922-25207612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 27
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chrX:1176060-1175737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
34, 75
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chrX:6407468-6407794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 74
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chrX:27705506-27705846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 79
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chrX:40320327-40320672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
27, 88
               

               
Conread position:
               
2-160
               

               
Cow position:
               
chrX:42507717-42507563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
2-165
               

               
Cow position:
               
chrX:12405463-12405291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
2-231
               

               
Cow position:
               
chrX:18695004-18694770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
30, 74
               

               
Conread position:
               
2-236
               

               
Cow position:
               
chrX:23785582-23785809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
168, 26
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chrX:39220000-39220312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
30, 96
               

               
Conread position:
               
2-302
               

               
Cow position:
               
chrX:28846961-28846665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
166, 63
               

               
Conread position:
               
2-316
               

               
Cow position:
               
chrX:12290648-12290962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 59
               

               
Conread position:
               
3-161
               

               
Cow position:
               
chrX:24105549-24105710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 61
               

               
Conread position:
               
3-225
               

               
Cow position:
               
chrX:19097296-19097066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
18, 68
               

               
Conread position:
               
3-233
               

               
Cow position:
               
chrX:31627054-31626821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
7, 22
               

               
Conread position:
               
3-236
               

               
Cow position:
               
chrX:45884054-45883808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
29, 94
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chrX:14599454-14599700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
27, 145
               

               
Conread position:
               
3-259
               

               
Cow position:
               
chrX:23562556-23562820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
49, 76
               

               
Conread position:
               
3-285
               

               
Cow position:
               
chrX:23113199-23113503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
25, 231
               

               
Conread position:
               
3-290
               

               
Cow position:
               
chrX:47344219-47344515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
16, 86
               

               
Conread position:
               
3-302
               

               
Cow position:
               
chrX:40183422-40183126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
167, 52
               

               
Conread position:
               
3-302
               

               
Cow position:
               
chrX:46032799-46032500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
45, 58
               

               
Conread position:
               
3-308
               

               
Cow position:
               
chrX:25815985-25815665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 65
               

               
Conread position:
               
3-308
               

               
Cow position:
               
chrX:33000824-33001132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
20, 225
               

               
Conread position:
               
3-308
               

               
Cow position:
               
chrX:41122989-41123280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
48, 72
               

               
Conread position:
               
3-315
               

               
Cow position:
               
chrX:20887718-20887407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 118
               

               
Conread position:
               
3-316
               

               
Cow position:
               
chrX:32420141-32420452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
29, 72
               

               
Conread position:
               
3-317
               

               
Cow position:
               
chrX:4632928-4632611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 55
               

               
Conread position:
               
3-319
               

               
Cow position:
               
chrX:40108589-40108267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 60
               

               
Conread position:
               
4-235
               

               
Cow position:
               
chrX:29194156-29194394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
27, 73
               

               
Conread position:
               
4-264
               

               
Cow position:
               
chrX:4515606-4515878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
26, 88
               

               
Conread position:
               
4-308
               

               
Cow position:
               
chrX:21642552-21642247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
16, 68
               

               
Conread position:
               
5-297
               

               
Cow position:
               
chrX:41674033-41674320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
73, 225
               

               
Conread position:
               
6-322
               

               
Cow position:
               
chrX:19469576-19469264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
51, 58
               

               
Conread position:
               
7-231
               

               
Cow position:
               
chrX:23091800-23092027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
45, 7
               

               
Conread position:
               
7-302
               

               
Cow position:
               
chrX:34441526-34441225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
16, 103
               

               
Conread position:
               
7-316
               

               
Cow position:
               
chrX:31729367-31729681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
23, 84
               

               
Conread position:
               
7-363
               

               
Cow position:
               
chrX:33466535-33466907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 69
               

               
Conread position:
               
8-240
               

               
Cow position:
               
chrX:17888492-17888256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
21, 82
               

               
Conread position:
               
8-274
               

               
Cow position:
               
chrX:40283052-40283323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
22, 127
               

               
Conread position:
               
8-301
               

               
Cow position:
               
chrX:47186393-47186099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
24, 59
               

               
Conread position:
               
8-302
               

               
Cow position:
               
chrX:38935210-38935507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
19, 65
               

               
Conread position:
               
8-310
               

               
Cow position:
               
chrX:38094591-38094290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
11, 131
               

               
Conread position:
               
9-233
               

               
Cow position:
               
chrX:6278569-6278338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
9-283
               

               
Cow position:
               
chrX:31294632-31294360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
10, 54
               

               
Conread position:
               
9-298
               

               
Cow position:
               
chrX:1088205-1087924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
10, 31
               

               
Conread position:
               
9-301
               

               
Cow position:
               
chrX:20168489-20168782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 68
               

               
Conread position:
               
9-302
               

               
Cow position:
               
chrX:27261119-27261418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 226
               

               
Conread position:
               
9-302
               

               
Cow position:
               
chrX:38549378-38549675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 64
               

               
Conread position:
               
9-308
               

               
Cow position:
               
chrX:30133389-30133090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
10, 201
               

               
Conread position:
               
9-316
               

               
Cow position:
               
chrX:31489451-31489763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 78
               

               
Conread position:
               
9-331
               

               
Cow position:
               
chrX:35885796-35885474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 226
               

               
Conread position:
               
10-237
               

               
Cow position:
               
chrX:32978143-32977922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
42, 60
               

               
Conread position:
               
10-281
               

               
Cow position:
               
chrX:27511360-27511628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
11, 68
               

               
Conread position:
               
10-302
               

               
Cow position:
               
chrX:4109125-4109413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 13
               

               
Conread position:
               
11-265
               

               
Cow position:
               
chrX:28866070-28865813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
41, 125
               

               
Conread position:
               
11-316
               

               
Cow position:
               
chrX:10865938-10865629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
70, 34
               

               
Conread position:
               
12-229
               

               
Cow position:
               
chrX:3130505-3130727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
27, 65
               

               
Conread position:
               
13-212
               

               
Cow position:
               
chrX:19943301-19943097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
11, 147
               

               
Conread position:
               
13-257
               

               
Cow position:
               
chrX:14275809-14275565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
41, 211
               

               
Conread position:
               
13-312
               

               
Cow position:
               
chrX:28632545-28632244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
147, 11
               

               
Conread position:
               
16-217
               

               
Cow position:
               
chrX:43779905-43779708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
36, 8
               

               
Conread position:
               
16-308
               

               
Cow position:
               
chrX:870237-869948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
15, 55
               

               
Conread position:
               
16-311
               

               
Cow position:
               
chrX:34565220-34565521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
5, 146
               

               
Conread position:
               
16-316
               

               
Cow position:
               
chrX:34411783-34412090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
38, 8
               

               
Conread position:
               
17-213
               

               
Cow position:
               
chrX:46429881-46429679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
37, 81
               

               
Conread position:
               
17-225
               

               
Cow position:
               
chrX:46304998-46305214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
39, 6
               

               
Conread position:
               
17-236
               

               
Cow position:
               
chrX:29680318-29680097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
35, 6
               

               
Conread position:
               
17-276
               

               
Cow position:
               
chrX:34222654-34222915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 149
               

               
Conread position:
               
17-299
               

               
Cow position:
               
chrX:35224236-35224501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
5, 59
               

               
Conread position:
               
17-302
               

               
Cow position:
               
chrX:9201492-9201771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
59, 6
               

               
Conread position:
               
17-315
               

               
Cow position:
               
chrX:45110596-45110891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
5, 55
               

               
Conread position:
               
19-154
               

               
Cow position:
               
chrX:13136289-13136153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
33, 52
               

               
Conread position:
               
19-232
               

               
Cow position:
               
chrX:42873338-42873544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
149, 5
               

               
Conread position:
               
19-235
               

               
Cow position:
               
chrX:9416749-9416524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
34, 7
               

               
Conread position:
               
19-236
               

               
Cow position:
               
chrX:11717844-11717620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
33, 5
               

               
Conread position:
               
19-245
               

               
Cow position:
               
chrX:38208599-38208373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
151, 5
               

               
Conread position:
               
19-278
               

               
Cow position:
               
chrX:14955821-14955564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
35, 50
               

               
Conread position:
               
19-284
               

               
Cow position:
               
chrX:35542838-35543094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
24, 55
               

               
Conread position:
               
19-288
               

               
Cow position:
               
chrX:29938033-29938305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
30, 5
               

               
Conread position:
               
19-288
               

               
Cow position:
               
chrX:30840487-30840755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
103, 29
               

               
Conread position:
               
19-291
               

               
Cow position:
               
chrX:40685388-40685112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
35, 56
               

               
Conread position:
               
19-298
               

               
Cow position:
               
chrX:44396961-44397235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
33, 52
               

               
Conread position:
               
19-308
               

               
Cow position:
               
chrX:33800267-33800559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
151, 5
               

               
Conread position:
               
19-308
               

               
Cow position:
               
chrX:48003791-48004081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
37, 5
               

               
Conread position:
               
19-312
               

               
Cow position:
               
chrX:161357-161638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
35, 5
               

               
Conread position:
               
19-326
               

               
Cow position:
               
chrX:8917341-8917647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
151, 5
               

               
Conread position:
               
20-174
               

               
Cow position:
               
chrX:27685192-27685349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
36, 59
               

               
Conread position:
               
20-185
               

               
Cow position:
               
chrX:42171352-42171185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
32, 67
               

               
Conread position:
               
20-196
               

               
Cow position:
               
chrX:45403883-45403703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
20-212
               

               
Cow position:
               
chrX:36514950-36514753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
20-213
               

               
Cow position:
               
chrX:39126276-39126466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
152, 31
               

               
Conread position:
               
20-220
               

               
Cow position:
               
chrX:48044569-48044368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 57
               

               
Conread position:
               
20-223
               

               
Cow position:
               
chrX:29289523-29289728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
39, 56
               

               
Conread position:
               
20-226
               

               
Cow position:
               
chrX:38728682-38728887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
32, 57
               

               
Conread position:
               
20-228
               

               
Cow position:
               
chrX:44657017-44656802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
29, 61
               

               
Conread position:
               
20-235
               

               
Cow position:
               
chrX:32623511-32623732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
20-236
               

               
Cow position:
               
chrX:9365731-9365513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
32, 52
               

               
Conread position:
               
20-245
               

               
Cow position:
               
chrX:34401942-34402170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
32, 73
               

               
Conread position:
               
20-269
               

               
Cow position:
               
chrX:27301815-27302072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
46, 67
               

               
Conread position:
               
20-285
               

               
Cow position:
               
chrX:1616100-1615847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
31, 113
               

               
Conread position:
               
20-285
               

               
Cow position:
               
chrX:44703128-44702854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
32, 51
               

               
Conread position:
               
20-298
               

               
Cow position:
               
chrX:46532557-46532266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
20-300
               

               
Cow position:
               
chrX:27509079-27508798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 137
               

               
Conread position:
               
20-302
               

               
Cow position:
               
chrX:4153091-4152816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
34, 202
               

               
Conread position:
               
20-302
               

               
Cow position:
               
chrX:9252218-9251935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
34, 57
               

               
Conread position:
               
20-302
               

               
Cow position:
               
chrX:31250331-31250618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 66
               

               
Conread position:
               
20-302
               

               
Cow position:
               
chrX:40035499-40035214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
42, 96
               

               
Conread position:
               
20-303
               

               
Cow position:
               
chrX:34313973-34314250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
32, 84
               

               
Conread position:
               
20-311
               

               
Cow position:
               
chrX:13146925-13147221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
40, 147
               

               
Conread position:
               
20-311
               

               
Cow position:
               
chrX:43115096-43115386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
150, 111
               

               
Conread position:
               
20-312
               

               
Cow position:
               
chrX:18204517-18204228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
116, 47
               

               
Conread position:
               
20-312
               

               
Cow position:
               
chrX:34792364-34792087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
150, 54
               

               
Conread position:
               
20-312
               

               
Cow position:
               
chrX:42927875-42927590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
34, 49
               

               
Conread position:
               
20-315
               

               
Cow position:
               
chrX:27442611-27442295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
20-315
               

               
Cow position:
               
chrX:32820974-32821279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
32, 44
               

               
Conread position:
               
20-316
               

               
Cow position:
               
chrX:44054751-44055046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 48
               

               
Conread position:
               
20-317
               

               
Cow position:
               
chrX:46587764-46588063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 209
               

               
Conread position:
               
20-321
               

               
Cow position:
               
chrX:3654552-3654850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
26, 44
               

               
Conread position:
               
20-321
               

               
Cow position:
               
chrX:9635241-9634945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
150, 34
               

               
Conread position:
               
20-330
               

               
Cow position:
               
chrX:5063197-5063492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
41, 24
               

               
Conread position:
               
20-337
               

               
Cow position:
               
chrX:31515113-31515434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
32, 19
               

               
Conread position:
               
20-345
               

               
Cow position:
               
chrX:40480924-40480578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
39, 62
               

               
Conread position:
               
20-356
               

               
Cow position:
               
chrX:46072876-46072545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
32, 199
               

               
Conread position:
               
20-382
               

               
Cow position:
               
chrX:38964049-38964400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 68
               

               
Conread position:
               
22-308
               

               
Cow position:
               
chrX:11825694-11825409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
151, 37
               

               
Conread position:
               
23-287
               

               
Cow position:
               
chrX:842107-842368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
19, 54
               

               
Conread position:
               
23-299
               

               
Cow position:
               
chrX:44339377-44339096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 113
               

               
Conread position:
               
23-302
               

               
Cow position:
               
chrX:42247239-42246953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
23-316
               

               
Cow position:
               
chrX:45976869-45977167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
29, 193
               

               
Conread position:
               
23-321
               

               
Cow position:
               
chrX:38654485-38654182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
29, 64
               

               
Conread position:
               
23-339
               

               
Cow position:
               
chrX:35985765-35986080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
31, 69
               

               
Conread position:
               
24-235
               

               
Cow position:
               
chrX:15820545-15820756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
28, 56
               

               
Conread position:
               
24-235
               

               
Cow position:
               
chrX:33639921-33640137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
28, 66
               

               
Conread position:
               
24-264
               

               
Cow position:
               
chrX:18964876-18964635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
28, 11
               

               
Conread position:
               
24-264
               

               
Cow position:
               
chrX:34502870-34503118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
32, 48
               

               
Conread position:
               
24-288
               

               
Cow position:
               
chrX:4279169-4278905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
28, 47
               

               
Conread position:
               
24-300
               

               
Cow position:
               
chrX:10829381-10829661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
24-302
               

               
Cow position:
               
chrX:296343-296620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
28, 102
               

               
Conread position:
               
24-302
               

               
Cow position:
               
chrX:9360836-9361110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
32, 48
               

               
Conread position:
               
24-302
               

               
Cow position:
               
chrX:22283780-22284067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
30, 136
               

               
Conread position:
               
24-302
               

               
Cow position:
               
chrX:23561809-23562101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
126, 39
               

               
Conread position:
               
24-302
               

               
Cow position:
               
chrX:28013499-28013212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
32, 53
               

               
Conread position:
               
24-308
               

               
Cow position:
               
chrX:22921268-22921555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
19, 157
               

               
Conread position:
               
24-308
               

               
Cow position:
               
chrX:48262557-48262839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
146, 48
               

               
Conread position:
               
24-311
               

               
Cow position:
               
chrX:12249750-12250052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
32, 173
               

               
Conread position:
               
24-315
               

               
Cow position:
               
chrX:25036935-25037232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
28, 51
               

               
Conread position:
               
24-316
               

               
Cow position:
               
chrX:13923820-13924102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
146, 36
               

               
Conread position:
               
24-316
               

               
Cow position:
               
chrX:36866119-36866417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 161
               

               
Conread position:
               
24-317
               

               
Cow position:
               
chrX:15147239-15146956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
28, 39
               

               
Conread position:
               
24-322
               

               
Cow position:
               
chrX:27459804-27460116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
35, 64
               

               
Conread position:
               
24-322
               

               
Cow position:
               
chrX:40175116-40175425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
43, 107
               

               
Conread position:
               
24-322
               

               
Cow position:
               
chrX:45448848-45449161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
35, 15
               

               
Conread position:
               
24-323
               

               
Cow position:
               
chrX:8869456-8869156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
30, 71
               

               
Conread position:
               
24-326
               

               
Cow position:
               
chrX:21672504-21672815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
95, 62
               

               
Conread position:
               
25-326
               

               
Cow position:
               
chrX:36367994-36367684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
5, 289
               

               
Conread position:
               
26-224
               

               
Cow position:
               
chrX:22915086-22914891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
26, 18
               

               
Conread position:
               
26-315
               

               
Cow position:
               
chrX:7648451-7648172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 35
               

               
Conread position:
               
26-329
               

               
Cow position:
               
chrX:7351251-7351556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
26, 56
               

               
Conread position:
               
28-225
               

               
Cow position:
               
chrX:31311979-31312181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
28-301
               

               
Cow position:
               
chrX:26492959-26493234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
68, 46
               

               
Conread position:
               
29-288
               

               
Cow position:
               
chrX:29544922-29544672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
141, 59
               

               
Conread position:
               
29-312
               

               
Cow position:
               
chrX:22393033-22392749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
25, 170
               

               
Conread position:
               
30-235
               

               
Cow position:
               
chrX:27772007-27771806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
23, 48
               

               
Conread position:
               
30-238
               

               
Cow position:
               
chrX:6260194-6259985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
20, 43
               

               
Conread position:
               
30-282
               

               
Cow position:
               
chrX:19660509-19660246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
29, 58
               

               
Conread position:
               
30-283
               

               
Cow position:
               
chrX:1360040-1360291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
30, 39
               

               
Conread position:
               
30-302
               

               
Cow position:
               
chrX:36392234-36391960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
29, 41
               

               
Conread position:
               
30-308
               

               
Cow position:
               
chrX:25035425-25035147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 24
               

               
Conread position:
               
30-317
               

               
Cow position:
               
chrX:33855266-33854984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
9, 193
               

               
Conread position:
               
31-299
               

               
Cow position:
               
chrX:4645957-4645689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 56
               

               
Conread position:
               
32-293
               

               
Cow position:
               
chrX:6488536-6488784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
27, 51
               

               
Conread position:
               
34-308
               

               
Cow position:
               
chrX:1397586-1397863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
17, 9
               

               
Conread position:
               
38-276
               

               
Cow position:
               
chrX:44660625-44660386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
19, 7
               

               
Conread position:
               
38-288
               

               
Cow position:
               
chrX:44796345-44796598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
21, 7
               

               
Conread position:
               
38-299
               

               
Cow position:
               
chrX:9272507-9272232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
38-302
               

               
Cow position:
               
chrX:45124365-45124628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
21, 7
               

               
Conread position:
               
38-307
               

               
Cow position:
               
chrX:48532277-48532547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
21, 7
               

               
Conread position:
               
38-308
               

               
Cow position:
               
chrX:44090885-44091157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
21, 7
               

               
Conread position:
               
38-308
               

               
Cow position:
               
chrX:45254620-45254348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
21, 7
               

               
Conread position:
               
38-311
               

               
Cow position:
               
chrX:45447218-45447494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
21, 7
               

               
Conread position:
               
38-311
               

               
Cow position:
               
chrX:48574609-48574885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
21, 7
               

               
Conread position:
               
39-227
               

               
Cow position:
               
chrX:29553248-29553438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
12, 46
               

               
Conread position:
               
39-316
               

               
Cow position:
               
chrX:42893880-42894164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 191
               

               
Conread position:
               
40-214
               

               
Cow position:
               
chrX:10305385-10305210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
6, 37
               

               
Conread position:
               
41-321
               

               
Cow position:
               
chrX:17956660-17956937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
129, 42
               

               
Conread position:
               
46-214
               

               
Cow position:
               
chrX:17966316-17966482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
124, 22
               

               
Conread position:
               
48-316
               

               
Cow position:
               
chrX:6599809-6599532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
49-316
               

               
Cow position:
               
chrX:41871041-41871298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
23, 34
               

               
Conread position:
               
50-267
               

               
Cow position:
               
chrX:45064816-45064599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
120, 21
               

               
Conread position:
               
50-299
               

               
Cow position:
               
chrX:48141796-48142045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
120, 24
               

               
Conread position:
               
50-302
               

               
Cow position:
               
chrX:44202071-44201817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
19, 34
               

               
Conread position:
               
50-308
               

               
Cow position:
               
chrX:44834676-44834419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
145, 24
               

               
Conread position:
               
50-308
               

               
Cow position:
               
chrX:44954468-44954728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
50-308
               

               
Cow position:
               
chrX:48198671-48198414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
120, 24
               

               
Conread position:
               
50-321
               

               
Cow position:
               
chrX:47238213-47238489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
120, 24
               

               
Conread position:
               
51-227
               

               
Cow position:
               
chrX:20743580-20743757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
21, 33
               

               
Conread position:
               
51-267
               

               
Cow position:
               
chrX:32318281-32318494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
79, 177
               

               
Conread position:
               
51-297
               

               
Cow position:
               
chrX:9651048-9650804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 29
               

               
Conread position:
               
51-298
               

               
Cow position:
               
chrX:24749065-24749311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
119, 37
               

               
Conread position:
               
51-298
               

               
Cow position:
               
chrX:38642227-38642466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
119, 20
               

               
Conread position:
               
51-308
               

               
Cow position:
               
chrX:43152179-43151917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
119, 23
               

               
Conread position:
               
51-311
               

               
Cow position:
               
chrX:5134453-5134711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
108, 25
               

               
Conread position:
               
51-317
               

               
Cow position:
               
chrX:1466139-1466408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
18, 26
               

               
Conread position:
               
51-317
               

               
Cow position:
               
chrX:19394530-19394798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
119, 32
               

               
Conread position:
               
51-317
               

               
Cow position:
               
chrX:46793768-46793507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
119, 11
               

               
Conread position:
               
51-321
               

               
Cow position:
               
chrX:47013425-47013155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
119, 11
               

               
Conread position:
               
52-236
               

               
Cow position:
               
chrX:40532065-40531880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
118, 34
               

               
Conread position:
               
52-314
               

               
Cow position:
               
chrX:25411886-25412159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
118, 17
               

               
Conread position:
               
53-228
               

               
Cow position:
               
chrX:34278463-34278288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
110, 15
               

               
Conread position:
               
55-239
               

               
Cow position:
               
chrX:43116706-43116891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
115, 19
               

               
Conread position:
               
55-268
               

               
Cow position:
               
chrX:32605095-32604874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
14, 33
               

               
Conread position:
               
55-300
               

               
Cow position:
               
chrX:42836166-42836407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 23
               

               
Conread position:
               
55-311
               

               
Cow position:
               
chrX:44591081-44590824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
115, 19
               

               
Conread position:
               
56-288
               

               
Cow position:
               
chrX:42282559-42282791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
53, 27
               

               
Conread position:
               
56-350
               

               
Cow position:
               
chrX:42450033-42449733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
57-285
               

               
Cow position:
               
chrX:46070191-46069974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
21, 114
               

               
Conread position:
               
57-299
               

               
Cow position:
               
chrX:4328200-4327957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 21
               

               
Conread position:
               
57-299
               

               
Cow position:
               
chrX:29478705-29478947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 93
               

               
Conread position:
               
57-302
               

               
Cow position:
               
chrX:35275969-35276214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 26
               

               
Conread position:
               
58-302
               

               
Cow position:
               
chrX:10252215-10251974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
64, 77
               

               
Conread position:
               
58-315
               

               
Cow position:
               
chrX:20584312-20584552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
59-302
               

               
Cow position:
               
chrX:12219136-12219374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
111, 15
               

               
Conread position:
               
61-274
               

               
Cow position:
               
chrX:39180247-39180033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 23
               

               
Conread position:
               
61-311
               

               
Cow position:
               
chrX:45139945-45139694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
109, 7
               

               
Conread position:
               
63-263
               

               
Cow position:
               
chrX:25459748-25459541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
9, 80
               

               
Conread position:
               
63-312
               

               
Cow position:
               
chrX:17292943-17293194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
63-316
               

               
Cow position:
               
chrX:4559728-4559976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
107, 10
               

               
Conread position:
               
64-308
               

               
Cow position:
               
chrX:17704382-17704618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
106, 21
               

               
Conread position:
               
68-244
               

               
Cow position:
               
chrX:42244484-42244304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
68-308
               

               
Cow position:
               
chrX:5512622-5512377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
102, 6
               

               
Conread position:
               
68-308
               

               
Cow position:
               
chrX:27380348-27380594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
102, 15
               

               
Conread position:
               
68-317
               

               
Cow position:
               
chrX:43321061-43320810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
9, 205
               

               
Conread position:
               
69-222
               

               
Cow position:
               
chrX:38725803-38725957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
101, 55
               

               
Conread position:
               
69-279
               

               
Cow position:
               
chrX:19965401-19965190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
99, 5
               

               
Conread position:
               
69-285
               

               
Cow position:
               
chrX:8731088-8731305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
101, 69
               

               
Conread position:
               
69-308
               

               
Cow position:
               
chrX:38587848-38587611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
101, 14
               

               
Conread position:
               
69-331
               

               
Cow position:
               
chrX:35822339-35822588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
101, 19
               

               
Conread position:
               
70-264
               

               
Cow position:
               
chrX:29733595-29733392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
100, 6
               

               
Conread position:
               
70-302
               

               
Cow position:
               
chrX:20678142-20677914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
100, 13
               

               
Conread position:
               
70-302
               

               
Cow position:
               
chrX:30337957-30337726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
100, 41
               

               
Conread position:
               
70-302
               

               
Cow position:
               
chrX:38218709-38218941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
100, 149
               

               
Conread position:
               
70-302
               

               
Cow position:
               
chrX:45430026-45429802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
100, 16
               

               
Conread position:
               
70-312
               

               
Cow position:
               
chrX:38967883-38968132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
37, 84
               

               
Conread position:
               
70-317
               

               
Cow position:
               
chrX:27145599-27145845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
100, 162
               

               
Conread position:
               
70-318
               

               
Cow position:
               
chrX:23335977-23335730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 67
               

               
Conread position:
               
71-228
               

               
Cow position:
               
chrX:18046397-18046549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
116, 61
               

               
Conread position:
               
71-279
               

               
Cow position:
               
chrX:35620699-35620910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
71-288
               

               
Cow position:
               
chrX:27514853-27515073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
5, 175
               

               
Conread position:
               
71-298
               

               
Cow position:
               
chrX:27075055-27074827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
99, 140
               

               
Conread position:
               
71-301
               

               
Cow position:
               
chrX:48558742-48558973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
97, 187
               

               
Conread position:
               
71-302
               

               
Cow position:
               
chrX:27668961-27668734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
99, 15
               

               
Conread position:
               
71-302
               

               
Cow position:
               
chrX:40336906-40337139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 67
               

               
Conread position:
               
71-316
               

               
Cow position:
               
chrX:16984638-16984875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
99, 20
               

               
Conread position:
               
71-321
               

               
Cow position:
               
chrX:43150424-43150676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
71-325
               

               
Cow position:
               
chrX:42331274-42331522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
45, 147
               

               
Conread position:
               
72-228
               

               
Cow position:
               
chrX:45113614-45113775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
42, 149
               

               
Conread position:
               
72-230
               

               
Cow position:
               
chrX:24343576-24343414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
72-267
               

               
Cow position:
               
chrX:23188782-23188596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
98, 11
               

               
Conread position:
               
72-283
               

               
Cow position:
               
chrX:6007672-6007884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
72-288
               

               
Cow position:
               
chrX:14986153-14985948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
98, 6
               

               
Conread position:
               
72-302
               

               
Cow position:
               
chrX:3806680-3806907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 11
               

               
Conread position:
               
72-312
               

               
Cow position:
               
chrX:26843272-26843029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
98, 236
               

               
Conread position:
               
72-316
               

               
Cow position:
               
chrX:16836288-16836053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
98, 11
               

               
Conread position:
               
73-213
               

               
Cow position:
               
chrX:25788906-25788764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
97, 13
               

               
Conread position:
               
73-276
               

               
Cow position:
               
chrX:47079625-47079830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
73-307
               

               
Cow position:
               
chrX:44040178-44040410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
5, 54
               

               
Conread position:
               
73-311
               

               
Cow position:
               
chrX:32943077-32942843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
97, 13
               

               
Conread position:
               
73-315
               

               
Cow position:
               
chrX:11656078-11656322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
5, 158
               

               
Conread position:
               
73-315
               

               
Cow position:
               
chrX:34420732-34420977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
74-228
               

               
Cow position:
               
chrX:6223129-6222972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
74-275
               

               
Cow position:
               
chrX:11859538-11859335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
74-277
               

               
Cow position:
               
chrX:1055382-1055178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
96, 138
               

               
Conread position:
               
74-279
               

               
Cow position:
               
chrX:44736857-44736650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
74-282
               

               
Cow position:
               
chrX:46770963-46770754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
96, 9
               

               
Conread position:
               
74-299
               

               
Cow position:
               
chrX:16541657-16541431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
96, 44
               

               
Conread position:
               
74-302
               

               
Cow position:
               
chrX:25846074-25845845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
96, 135
               

               
Conread position:
               
74-308
               

               
Cow position:
               
chrX:36109617-36109380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
74-308
               

               
Cow position:
               
chrX:44859864-44859628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
74-308
               

               
Cow position:
               
chrX:45005376-45005141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
74-308
               

               
Cow position:
               
chrX:45391715-45391479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
74-308
               

               
Cow position:
               
chrX:45403547-45403311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
74-308
               

               
Cow position:
               
chrX:47255447-47255683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
74-308
               

               
Cow position:
               
chrX:48194892-48194657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
74-308
               

               
Cow position:
               
chrX:48397829-48397592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
74-311
               

               
Cow position:
               
chrX:1552968-1553206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
94, 232
               

               
Conread position:
               
74-311
               

               
Cow position:
               
chrX:44837263-44837505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
74-311
               

               
Cow position:
               
chrX:48118454-48118216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
15, 135
               

               
Conread position:
               
74-312
               

               
Cow position:
               
chrX:30672396-30672146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
78, 9
               

               
Conread position:
               
74-314
               

               
Cow position:
               
chrX:8493065-8493308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
96, 209
               

               
Conread position:
               
74-314
               

               
Cow position:
               
chrX:11326098-11325865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
145, 88
               

               
Conread position:
               
74-315
               

               
Cow position:
               
chrX:37856352-37856602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
47, 12
               

               
Conread position:
               
74-316
               

               
Cow position:
               
chrX:48473906-48474154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
74-317
               

               
Cow position:
               
chrX:29451543-29451303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
96, 34
               

               
Conread position:
               
74-329
               

               
Cow position:
               
chrX:44238766-44238503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
75-207
               

               
Cow position:
               
chrX:16830225-16830354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
95, 8
               

               
Conread position:
               
75-307
               

               
Cow position:
               
chrX:32574318-32574554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
93, 8
               

               
Conread position:
               
75-308
               

               
Cow position:
               
chrX:18111378-18111613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
75-315
               

               
Cow position:
               
chrX:20677366-20677604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
95, 198
               

               
Conread position:
               
76-302
               

               
Cow position:
               
chrX:47609791-47610018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
96, 69
               

               
Conread position:
               
77-225
               

               
Cow position:
               
chrX:23498674-23498528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
93, 6
               

               
Conread position:
               
77-285
               

               
Cow position:
               
chrX:35278332-35278522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
77-293
               

               
Cow position:
               
chrX:21665239-21665017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
93, 140
               

               
Conread position:
               
77-301
               

               
Cow position:
               
chrX:32910106-32910324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
77-302
               

               
Cow position:
               
chrX:36283340-36283568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
77-302
               

               
Cow position:
               
chrX:37955849-37956073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
93, 196
               

               
Conread position:
               
78-298
               

               
Cow position:
               
chrX:35383030-35382818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
90, 11
               

               
Conread position:
               
78-302
               

               
Cow position:
               
chrX:31745002-31744787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 144
               

               
Conread position:
               
78-305
               

               
Cow position:
               
chrX:42432511-42432281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
50, 81
               

               
Conread position:
               
79-318
               

               
Cow position:
               
chrX:22864270-22864019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
42, 239
               

               
Conread position:
               
80-236
               

               
Cow position:
               
chrX:41270981-41270821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
80-312
               

               
Cow position:
               
chrX:19717527-19717749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
90, 19
               

               
Conread position:
               
82-201
               

               
Cow position:
               
chrX:37665698-37665819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
82-239
               

               
Cow position:
               
chrX:31829454-31829295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
82-298
               

               
Cow position:
               
chrX:1122536-1122323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 50
               

               
Conread position:
               
82-298
               

               
Cow position:
               
chrX:11653771-11653991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
44, 153
               

               
Conread position:
               
82-298
               

               
Cow position:
               
chrX:38301816-38302038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
82-308
               

               
Cow position:
               
chrX:1719122-1719337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
88, 148
               

               
Conread position:
               
82-308
               

               
Cow position:
               
chrX:24170722-24170491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
82-312
               

               
Cow position:
               
chrX:19018824-19018590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
82-312
               

               
Cow position:
               
chrX:35658807-35659032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
88, 9
               

               
Conread position:
               
82-314
               

               
Cow position:
               
chrX:17524377-17524144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 224
               

               
Conread position:
               
82-315
               

               
Cow position:
               
chrX:11762994-11762771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
88, 129
               

               
Conread position:
               
82-319
               

               
Cow position:
               
chrX:38321375-38321136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
88, 129
               

               
Conread position:
               
82-328
               

               
Cow position:
               
chrX:13121945-13122196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 134
               

               
Conread position:
               
83-313
               

               
Cow position:
               
chrX:16324006-16323776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
87, 50
               

               
Conread position:
               
83-315
               

               
Cow position:
               
chrX:26205440-26205217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
85, 136
               

               
Conread position:
               
83-316
               

               
Cow position:
               
chrX:35285181-35285417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
84-288
               

               
Cow position:
               
chrX:28836903-28837098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
107, 64
               

               
Conread position:
               
84-316
               

               
Cow position:
               
chrX:35431236-35430999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
37, 110
               

               
Conread position:
               
84-317
               

               
Cow position:
               
chrX:18485806-18486046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
19, 126
               

               
Conread position:
               
84-318
               

               
Cow position:
               
chrX:16409611-16409859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
86, 203
               

               
Conread position:
               
84-334
               

               
Cow position:
               
chrX:4512248-4512506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
32, 129
               

               
Conread position:
               
85-308
               

               
Cow position:
               
chrX:25049272-25049047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
85-316
               

               
Cow position:
               
chrX:41941633-41941865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 160
               

               
Conread position:
               
85-321
               

               
Cow position:
               
chrX:42479843-42480074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
82, 131
               

               
Conread position:
               
86-223
               

               
Cow position:
               
chrX:27320331-27320471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
47, 75
               

               
Conread position:
               
86-312
               

               
Cow position:
               
chrX:35392283-35392067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
84, 49
               

               
Conread position:
               
86-316
               

               
Cow position:
               
chrX:24331787-24332019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
86-325
               

               
Cow position:
               
chrX:19356480-19356713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 64
               

               
Conread position:
               
87-228
               

               
Cow position:
               
chrX:23266427-23266569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
83, 125
               

               
Conread position:
               
87-316
               

               
Cow position:
               
chrX:29467766-29467541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
83, 134
               

               
Conread position:
               
88-233
               

               
Cow position:
               
chrX:36313993-36313846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
88-236
               

               
Cow position:
               
chrX:38227094-38226949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
82, 52
               

               
Conread position:
               
88-279
               

               
Cow position:
               
chrX:32186781-32186976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
88-284
               

               
Cow position:
               
chrX:30922184-30922382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
88-288
               

               
Cow position:
               
chrX:30824000-30824199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
16, 132
               

               
Conread position:
               
88-299
               

               
Cow position:
               
chrX:3494809-3494596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
88-302
               

               
Cow position:
               
chrX:20957251-20957465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
82, 203
               

               
Conread position:
               
88-308
               

               
Cow position:
               
chrX:15545895-15546115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
82, 121
               

               
Conread position:
               
88-308
               

               
Cow position:
               
chrX:40574929-40574709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
82, 42
               

               
Conread position:
               
88-312
               

               
Cow position:
               
chrX:24336064-24335839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
82, 221
               

               
Conread position:
               
89-235
               

               
Cow position:
               
chrX:47342130-47342277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
81, 41
               

               
Conread position:
               
89-264
               

               
Cow position:
               
chrX:23098190-23098019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
89-317
               

               
Cow position:
               
chrX:753166-753405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
45, 154
               

               
Conread position:
               
89-317
               

               
Cow position:
               
chrX:8759638-8759866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
38, 21
               

               
Conread position:
               
90-235
               

               
Cow position:
               
chrX:31373551-31373698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
90-308
               

               
Cow position:
               
chrX:24104854-24105078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
90-312
               

               
Cow position:
               
chrX:6267683-6267908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
80, 38
               

               
Conread position:
               
91-302
               

               
Cow position:
               
chrX:31479987-31480194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
79, 60
               

               
Conread position:
               
91-316
               

               
Cow position:
               
chrX:34454673-34454901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
92-299
               

               
Cow position:
               
chrX:19761771-19761974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
78, 135
               

               
Conread position:
               
92-350
               

               
Cow position:
               
chrX:20345470-20345731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
78, 26
               

               
Conread position:
               
94-217
               

               
Cow position:
               
chrX:10075992-10076115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
76, 20
               

               
Conread position:
               
94-288
               

               
Cow position:
               
chrX:41810149-41809961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
69, 127
               

               
Conread position:
               
94-290
               

               
Cow position:
               
chrX:3507580-3507780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
19, 75
               

               
Conread position:
               
94-312
               

               
Cow position:
               
chrX:32877356-32877141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
76, 123
               

               
Conread position:
               
94-315
               

               
Cow position:
               
chrX:28940261-28940484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
69, 127
               

               
Conread position:
               
95-316
               

               
Cow position:
               
chrX:41454934-41454711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
95-318
               

               
Cow position:
               
chrX:24425982-24425756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
95-326
               

               
Cow position:
               
chrX:28067870-28068102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
75, 225
               

               
Conread position:
               
98-297
               

               
Cow position:
               
chrX:35681589-35681790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
19, 121
               

               
Conread position:
               
99-294
               

               
Cow position:
               
chrX:36922118-36921921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
71, 151
               

               
Conread position:
               
99-302
               

               
Cow position:
               
chrX:8642070-8642273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 62
               

               
Conread position:
               
99-302
               

               
Cow position:
               
chrX:37062561-37062339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
99-312
               

               
Cow position:
               
chrX:32866899-32867108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
71, 130
               

               
Conread position:
               
99-316
               

               
Cow position:
               
chrX:51872-51661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
71, 30
               

               
Conread position:
               
99-316
               

               
Cow position:
               
chrX:16763903-16763687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
28, 135
               

               
Conread position:
               
100-300
               

               
Cow position:
               
chrX:17298283-17298486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
15, 58
               

               
Conread position:
               
101-302
               

               
Cow position:
               
chrX:23359085-23358889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
69, 36
               

               
Conread position:
               
101-312
               

               
Cow position:
               
chrX:7911046-7910836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
81, 97
               

               
Conread position:
               
102-308
               

               
Cow position:
               
chrX:1960398-1960191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
68, 133
               

               
Conread position:
               
102-317
               

               
Cow position:
               
chrX:11454213-11454416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
61, 76
               

               
Conread position:
               
103-308
               

               
Cow position:
               
chrX:46909843-46910042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
67, 129
               

               
Conread position:
               
103-312
               

               
Cow position:
               
chrX:44995526-44995738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
103-313
               

               
Cow position:
               
chrX:34398756-34398545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
68, 203
               

               
Conread position:
               
103-316
               

               
Cow position:
               
chrX:41790401-41790185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
104-294
               

               
Cow position:
               
chrX:11781282-11781467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
66, 84
               

               
Conread position:
               
104-298
               

               
Cow position:
               
chrX:34270592-34270785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
66, 11
               

               
Conread position:
               
104-308
               

               
Cow position:
               
chrX:21817779-21817574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
66, 105
               

               
Conread position:
               
104-320
               

               
Cow position:
               
chrX:18196048-18196245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
179, 12
               

               
Conread position:
               
104-321
               

               
Cow position:
               
chrX:2314590-2314373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
66, 207
               

               
Conread position:
               
105-228
               

               
Cow position:
               
chrX:23860964-23860838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
105-253
               

               
Cow position:
               
chrX:23185516-23185370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
7, 78
               

               
Conread position:
               
105-298
               

               
Cow position:
               
chrX:4612852-4612650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
65, 57
               

               
Conread position:
               
105-302
               

               
Cow position:
               
chrX:4091954-4092150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
65, 169
               

               
Conread position:
               
105-302
               

               
Cow position:
               
chrX:25930667-25930868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
65, 157
               

               
Conread position:
               
105-302
               

               
Cow position:
               
chrX:27416122-27416323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
12, 49
               

               
Conread position:
               
105-302
               

               
Cow position:
               
chrX:40648926-40649130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
37, 15
               

               
Conread position:
               
105-318
               

               
Cow position:
               
chrX:37749953-37749750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
65, 36
               

               
Conread position:
               
105-321
               

               
Cow position:
               
chrX:30958756-30958974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
51, 172
               

               
Conread position:
               
106-283
               

               
Cow position:
               
chrX:19795472-19795300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
51, 5
               

               
Conread position:
               
106-311
               

               
Cow position:
               
chrX:39427268-39427061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
107-228
               

               
Cow position:
               
chrX:27667457-27667580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
107-285
               

               
Cow position:
               
chrX:36722773-36722602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
63, 105
               

               
Conread position:
               
107-295
               

               
Cow position:
               
chrX:31986542-31986351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
49, 106
               

               
Conread position:
               
107-298
               

               
Cow position:
               
chrX:8326936-8327129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
107-303
               

               
Cow position:
               
chrX:48822310-48822113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
63, 110
               

               
Conread position:
               
107-312
               

               
Cow position:
               
chrX:14925308-14925512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
63, 31
               

               
Conread position:
               
108-263
               

               
Cow position:
               
chrX:44754347-44754188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
108-295
               

               
Cow position:
               
chrX:46533272-46533083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
108-308
               

               
Cow position:
               
chrX:42050237-42050034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
108-318
               

               
Cow position:
               
chrX:33020470-33020686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
108-328
               

               
Cow position:
               
chrX:17498355-17498577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
109-326
               

               
Cow position:
               
chrX:5876141-5876349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
61, 114
               

               
Conread position:
               
110-302
               

               
Cow position:
               
chrX:27270410-27270597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
58, 120
               

               
Conread position:
               
110-312
               

               
Cow position:
               
chrX:10278899-10279113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
29, 173
               

               
Conread position:
               
110-317
               

               
Cow position:
               
chrX:1938045-1938257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
10, 112
               

               
Conread position:
               
111-236
               

               
Cow position:
               
chrX:33151947-33151825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
59, 67
               

               
Conread position:
               
111-301
               

               
Cow position:
               
chrX:876806-876620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
80, 43
               

               
Conread position:
               
111-307
               

               
Cow position:
               
chrX:45843558-45843359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
59, 78
               

               
Conread position:
               
112-302
               

               
Cow position:
               
chrX:16556180-16555995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
80, 92
               

               
Conread position:
               
112-302
               

               
Cow position:
               
chrX:42760289-42760481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
113-288
               

               
Cow position:
               
chrX:13144484-13144661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
113-311
               

               
Cow position:
               
chrX:37752068-37751874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
57, 102
               

               
Conread position:
               
113-316
               

               
Cow position:
               
chrX:41435511-41435301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
57, 205
               

               
Conread position:
               
113-316
               

               
Cow position:
               
chrX:44123293-44123492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
57, 119
               

               
Conread position:
               
114-316
               

               
Cow position:
               
chrX:48186501-48186292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
115-288
               

               
Cow position:
               
chrX:11813116-11813288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
55, 29
               

               
Conread position:
               
115-297
               

               
Cow position:
               
chrX:45759711-45759892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
55, 114
               

               
Conread position:
               
115-302
               

               
Cow position:
               
chrX:27415540-27415359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
55, 107
               

               
Conread position:
               
115-316
               

               
Cow position:
               
chrX:14951313-14951110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
55, 109
               

               
Conread position:
               
115-316
               

               
Cow position:
               
chrX:35409792-35409995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
55, 62
               

               
Conread position:
               
115-323
               

               
Cow position:
               
chrX:19203306-19203096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
55, 96
               

               
Conread position:
               
116-312
               

               
Cow position:
               
chrX:11517939-11517740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
117-288
               

               
Cow position:
               
chrX:10237870-10237699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
53, 7
               

               
Conread position:
               
117-333
               

               
Cow position:
               
chrX:46068717-46068508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
53, 101
               

               
Conread position:
               
118-316
               

               
Cow position:
               
chrX:19000169-19000370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
119-316
               

               
Cow position:
               
chrX:41010942-41011132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
51, 90
               

               
Conread position:
               
120-299
               

               
Cow position:
               
chrX:13347318-13347494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
71, 48
               

               
Conread position:
               
120-302
               

               
Cow position:
               
chrX:1101602-1101778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
50, 87
               

               
Conread position:
               
120-311
               

               
Cow position:
               
chrX:31250850-31250657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
120-316
               

               
Cow position:
               
chrX:5097754-5097555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
39, 167
               

               
Conread position:
               
120-316
               

               
Cow position:
               
chrX:44225686-44225486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
120-321
               

               
Cow position:
               
chrX:14135724-14135922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
50, 18
               

               
Conread position:
               
120-329
               

               
Cow position:
               
chrX:42875257-42875465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
50, 101
               

               
Conread position:
               
120-341
               

               
Cow position:
               
chrX:18030372-18030150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
50, 192
               

               
Conread position:
               
121-302
               

               
Cow position:
               
chrX:6389127-6389307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
49, 41
               

               
Conread position:
               
121-308
               

               
Cow position:
               
chrX:42461572-42461393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
49, 56
               

               
Conread position:
               
121-322
               

               
Cow position:
               
chrX:10415207-10415003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
122-288
               

               
Cow position:
               
chrX:16007711-16007543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
122-302
               

               
Cow position:
               
chrX:6634391-6634573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
122-302
               

               
Cow position:
               
chrX:31983538-31983350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
48, 153
               

               
Conread position:
               
122-308
               

               
Cow position:
               
chrX:597427-597244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
69, 41
               

               
Conread position:
               
122-326
               

               
Cow position:
               
chrX:42516078-42515876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
48, 26
               

               
Conread position:
               
123-286
               

               
Cow position:
               
chrX:25049051-25048890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 7
               

               
Conread position:
               
123-301
               

               
Cow position:
               
chrX:41166777-41166602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
47, 84
               

               
Conread position:
               
123-302
               

               
Cow position:
               
chrX:4602890-4602710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
47, 34
               

               
Conread position:
               
123-308
               

               
Cow position:
               
chrX:37867301-37867488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
123-329
               

               
Cow position:
               
chrX:47100549-47100339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
125-308
               

               
Cow position:
               
chrX:1121317-1121132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
125-316
               

               
Cow position:
               
chrX:12800-12984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
65, 38
               

               
Conread position:
               
125-361
               

               
Cow position:
               
chrX:41363809-41363563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
126-316
               

               
Cow position:
               
chrX:16770115-16770307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
127-308
               

               
Cow position:
               
chrX:4169979-4169794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
43, 74
               

               
Conread position:
               
127-322
               

               
Cow position:
               
chrX:32215281-32215475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 5
               

               
Conread position:
               
129-315
               

               
Cow position:
               
chrX:15100037-15100221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
41, 96
               

               
Conread position:
               
130-300
               

               
Cow position:
               
chrX:28106902-28107072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
38, 102
               

               
Conread position:
               
130-302
               

               
Cow position:
               
chrX:20977454-20977285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
40, 129
               

               
Conread position:
               
130-316
               

               
Cow position:
               
chrX:41199279-41199464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
38, 105
               

               
Conread position:
               
131-302
               

               
Cow position:
               
chrX:5915244-5915419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
132-315
               

               
Cow position:
               
chrX:11674167-11674353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
133-302
               

               
Cow position:
               
chrX:10880731-10880560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
134-302
               

               
Cow position:
               
chrX:9451404-9451569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
37, 50
               

               
Conread position:
               
134-308
               

               
Cow position:
               
chrX:26882021-26881845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
134-312
               

               
Cow position:
               
chrX:45044511-45044693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
136-315
               

               
Cow position:
               
chrX:16801202-16801026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
56, 32
               

               
Conread position:
               
138-300
               

               
Cow position:
               
chrX:22552916-22552753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
32, 135
               

               
Conread position:
               
138-301
               

               
Cow position:
               
chrX:11602420-11602260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 18
               

               
Conread position:
               
138-302
               

               
Cow position:
               
chrX:6480533-6480367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
138-321
               

               
Cow position:
               
chrX:11589304-11589122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
32, 109
               

               
Conread position:
               
139-298
               

               
Cow position:
               
chrX:3494981-3494826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
31, 24
               

               
Conread position:
               
141-300
               

               
Cow position:
               
chrX:48574291-48574128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
141-316
               

               
Cow position:
               
chrX:34194015-34193838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
142-302
               

               
Cow position:
               
chrX:41215389-41215551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
145-301
               

               
Cow position:
               
chrX:33678403-33678243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
145-315
               

               
Cow position:
               
chrX:30789461-30789288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
145-318
               

               
Cow position:
               
chrX:37717794-37717966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
25, 11
               

               
Conread position:
               
149-311
               

               
Cow position:
               
chrX:42506875-42506710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
21, 159
               

               
Conread position:
               
150-302
               

               
Cow position:
               
chrX:3542931-3543093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
153-317
               

               
Cow position:
               
chrX:26720604-26720446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 79
               

               
Conread position:
               
156-347
               

               
Cow position:
               
chrX:17929082-17929270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
14, 79
               

               
Conread position:
               
158-308
               

               
Cow position:
               
chrX:11670769-11670921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
161-308
               

               
Cow position:
               
chrX:27226568-27226717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 13
               

               
Conread position:
               
163-312
               

               
Cow position:
               
chrX:1996364-1996213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
169-303
               

               
Cow position:
               
chrX:39887119-39886983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
169-317
               

               
Cow position:
               
chrX:10479844-10479995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
170-300
               

               
Cow position:
               
chrX:42159037-42159168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
171-302
               

               
Cow position:
               
chrX:26367606-26367474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
171-302
               

               
Cow position:
               
chrX:41194002-41194133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
109, 86
               

               
Conread position:
               
185-316
               

               
Cow position:
               
chrX:23185226-23185093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
188-301
               

               
Cow position:
               
chrX:42220587-42220474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
189-302
               

               
Cow position:
               
chrX:19162015-19161902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
189-311
               

               
Cow position:
               
chrX:38080263-38080385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
191-333
               

               
Cow position:
               
chrX:32590288-32590149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
113, 0
               
Show alignments to all cow chromosomes.