Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-LyN1-MLN01H090075.5
        

               Conread position:
               236-534
               

               Cow position:
               chr1:5423827-5423529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               198
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               23, 74
               

               Conread position:
               243-518
               

               Cow position:
               chr1:2971827-2972108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               9, 237
               

               Conread position:
               243-525
               

               Cow position:
               chr1:76658162-76657855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               22, 256
               

               Conread position:
               251-510
               

               Cow position:
               chr1:96019161-96019411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               251-534
               

               Cow position:
               chr1:57053124-57053408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               196
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               81, 50
               

               Conread position:
               254-505
               

               Cow position:
               chr1:44946688-44946927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               255-442
               

               Cow position:
               chr1:30504433-30504617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               133
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               255-460
               

               Cow position:
               chr1:42360206-42360422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               159
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               255-530
               

               Cow position:
               chr1:6589972-6590237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               204
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               199, 35
               

               Conread position:
               255-536
               

               Cow position:
               chr1:81481454-81481180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               190
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               17, 197
               

               Conread position:
               255-539
               

               Cow position:
               chr1:60986917-60987199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 217
               

               Conread position:
               257-518
               

               Cow position:
               chr1:34159771-34160016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               183
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               134, 22
               

               Conread position:
               257-518
               

               Cow position:
               chr1:46693722-46693463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               180
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               183, 45
               

               Conread position:
               257-524
               

               Cow position:
               chr1:48605964-48606228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               257-534
               

               Cow position:
               chr1:3323799-3324078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 41
               

               Conread position:
               257-534
               

               Cow position:
               chr1:6102978-6102696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               191
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               75, 217
               

               Conread position:
               257-534
               

               Cow position:
               chr1:12222670-12222400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               257-544
               

               Cow position:
               chr1:76613203-76612918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               258-454
               

               Cow position:
               chr1:26895043-26894844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               108, 44
               

               Conread position:
               258-505
               

               Cow position:
               chr1:54628921-54628677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               64, 9
               

               Conread position:
               259-415
               

               Cow position:
               chr1:85596877-85597027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               118
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               259-426
               

               Cow position:
               chr1:4374403-4374237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               259-427
               

               Cow position:
               chr1:95178890-95179055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               121
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               65, 38
               

               Conread position:
               259-428
               

               Cow position:
               chr1:43703343-43703511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               120
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               259-430
               

               Cow position:
               chr1:60707339-60707507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               259-433
               

               Cow position:
               chr1:60948728-60948899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               126
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               68, 40
               

               Conread position:
               259-433
               

               Cow position:
               chr1:81355773-81355596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               126
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               259-436
               

               Cow position:
               chr1:26702271-26702097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               126
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               43, 104
               

               Conread position:
               259-436
               

               Cow position:
               chr1:77683293-77683462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               259-436
               

               Cow position:
               chr1:89349898-89350075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               121
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               259-437
               

               Cow position:
               chr1:45288936-45288759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               133
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               166, 43
               

               Conread position:
               259-440
               

               Cow position:
               chr1:61542982-61542805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               134
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               259-443
               

               Cow position:
               chr1:24876197-24876379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               54, 40
               

               Conread position:
               259-443
               

               Cow position:
               chr1:48769739-48769919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               259-443
               

               Cow position:
               chr1:58036954-58037135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               259-444
               

               Cow position:
               chr1:42545850-42545661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               259-444
               

               Cow position:
               chr1:87936835-87937013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               131
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               259-447
               

               Cow position:
               chr1:4291096-4291285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               143
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               40, 112
               

               Conread position:
               259-450
               

               Cow position:
               chr1:56832838-56832655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               184, 19
               

               Conread position:
               259-454
               

               Cow position:
               chr1:28176945-28177132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               259-454
               

               Cow position:
               chr1:92437060-92436861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               139
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               34, 117
               

               Conread position:
               259-455
               

               Cow position:
               chr1:74927818-74928013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               259-455
               

               Cow position:
               chr1:78697834-78697643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               87, 40
               

               Conread position:
               259-455
               

               Cow position:
               chr1:97696678-97696873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               51, 110
               

               Conread position:
               259-457
               

               Cow position:
               chr1:101632403-101632205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               186, 48
               

               Conread position:
               259-458
               

               Cow position:
               chr1:52039568-52039768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               137
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               51, 119
               

               Conread position:
               259-458
               

               Cow position:
               chr1:100569090-100569288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               259-461
               

               Cow position:
               chr1:92965360-92965160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               63, 42
               

               Conread position:
               259-463
               

               Cow position:
               chr1:80336309-80336111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               152
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               183, 20
               

               Conread position:
               259-467
               

               Cow position:
               chr1:6972465-6972669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               196, 49
               

               Conread position:
               259-467
               

               Cow position:
               chr1:26616139-26615938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               54, 31
               

               Conread position:
               259-467
               

               Cow position:
               chr1:77880800-77880594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               40, 20
               

               Conread position:
               259-468
               

               Cow position:
               chr1:45670572-45670774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               72, 19
               

               Conread position:
               259-468
               

               Cow position:
               chr1:52994956-52995168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               150
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               43, 159
               

               Conread position:
               259-468
               

               Cow position:
               chr1:68672664-68672460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               259-468
               

               Cow position:
               chr1:81580105-81580319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               39, 85
               

               Conread position:
               259-468
               

               Cow position:
               chr1:95153155-95153364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               30, 50
               

               Conread position:
               259-468
               

               Cow position:
               chr1:98575981-98576185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               259-469
               

               Cow position:
               chr1:4032564-4032773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               48, 202
               

               Conread position:
               259-470
               

               Cow position:
               chr1:89785847-89786053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               259-479
               

               Cow position:
               chr1:34300614-34300400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               259-481
               

               Cow position:
               chr1:5539342-5539120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               63, 31
               

               Conread position:
               259-482
               

               Cow position:
               chr1:93554774-93554989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               259-485
               

               Cow position:
               chr1:32001385-32001167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               27, 108
               

               Conread position:
               259-487
               

               Cow position:
               chr1:86073531-86073750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               166
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               259-497
               

               Cow position:
               chr1:635129-635364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               259-501
               

               Cow position:
               chr1:76019760-76019526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               54, 40
               

               Conread position:
               259-504
               

               Cow position:
               chr1:31348504-31348261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               172
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               40, 28
               

               Conread position:
               259-508
               

               Cow position:
               chr1:51770024-51770273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               95, 39
               

               Conread position:
               259-508
               

               Cow position:
               chr1:91811717-91811960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               177
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               166, 43
               

               Conread position:
               259-511
               

               Cow position:
               chr1:57880850-57880600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               63, 30
               

               Conread position:
               259-511
               

               Cow position:
               chr1:90864357-90864110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               163
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               259-512
               

               Cow position:
               chr1:39681931-39682180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               164, 36
               

               Conread position:
               259-512
               

               Cow position:
               chr1:91816836-91816586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               67, 28
               

               Conread position:
               259-514
               

               Cow position:
               chr1:33913756-33914015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               73, 40
               

               Conread position:
               259-515
               

               Cow position:
               chr1:6294563-6294309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               180
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               63, 20
               

               Conread position:
               259-516
               

               Cow position:
               chr1:63138777-63139030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               259-516
               

               Cow position:
               chr1:73584475-73584219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               63, 30
               

               Conread position:
               259-517
               

               Cow position:
               chr1:1499755-1499503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               259-517
               

               Cow position:
               chr1:6958812-6959066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               96, 39
               

               Conread position:
               259-517
               

               Cow position:
               chr1:83072373-83072629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               43, 201
               

               Conread position:
               259-518
               

               Cow position:
               chr1:63390835-63390576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               175
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               61, 215
               

               Conread position:
               259-519
               

               Cow position:
               chr1:7175969-7175709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               175
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               73, 38
               

               Conread position:
               259-519
               

               Cow position:
               chr1:68845549-68845317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               52, 20
               

               Conread position:
               259-520
               

               Cow position:
               chr1:3923859-3923614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               259-520
               

               Cow position:
               chr1:6228648-6228391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               193
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               73, 39
               

               Conread position:
               259-520
               

               Cow position:
               chr1:6941399-6941656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               194
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               95, 39
               

               Conread position:
               259-520
               

               Cow position:
               chr1:19515679-19515427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               188, 31
               

               Conread position:
               259-520
               

               Cow position:
               chr1:34856695-34856435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               190
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               214, 0
               

               Conread position:
               259-520
               

               Cow position:
               chr1:43389115-43388864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               44, 58
               

               Conread position:
               259-520
               

               Cow position:
               chr1:45223515-45223766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               193
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               259-520
               

               Cow position:
               chr1:46030895-46031151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               47, 30
               

               Conread position:
               259-520
               

               Cow position:
               chr1:47288176-47288434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               259-520
               

               Cow position:
               chr1:49082676-49082936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               189
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               214, 0
               

               Conread position:
               259-520
               

               Cow position:
               chr1:82337845-82337590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               183
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               41, 110
               

               Conread position:
               259-520
               

               Cow position:
               chr1:86113469-86113206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 68
               

               Conread position:
               259-520
               

               Cow position:
               chr1:91066217-91065967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               190
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               259-520
               

               Cow position:
               chr1:96964256-96964509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               191
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               259-520
               

               Cow position:
               chr1:98453522-98453785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               70, 54
               

               Conread position:
               259-520
               

               Cow position:
               chr1:101866563-101866310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               180
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               259-526
               

               Cow position:
               chr1:2976058-2975793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 39
               

               Conread position:
               259-526
               

               Cow position:
               chr1:65905068-65904797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               33, 219
               

               Conread position:
               259-527
               

               Cow position:
               chr1:37726484-37726217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               197
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               166, 30
               

               Conread position:
               259-528
               

               Cow position:
               chr1:95637766-95638033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               259-529
               

               Cow position:
               chr1:21954296-21954028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               60, 130
               

               Conread position:
               259-530
               

               Cow position:
               chr1:627897-628168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 39
               

               Conread position:
               259-530
               

               Cow position:
               chr1:10616816-10617091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               90, 130
               

               Conread position:
               259-530
               

               Cow position:
               chr1:10942162-10941898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               199
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               48, 40
               

               Conread position:
               259-530
               

               Cow position:
               chr1:10964224-10964488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               198
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               48, 40
               

               Conread position:
               259-530
               

               Cow position:
               chr1:20667806-20667550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               190
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               259-530
               

               Cow position:
               chr1:20950657-20950917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               259-530
               

               Cow position:
               chr1:21508327-21508596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               75, 38
               

               Conread position:
               259-530
               

               Cow position:
               chr1:22944090-22943828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               201
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               184, 31
               

               Conread position:
               259-530
               

               Cow position:
               chr1:24778050-24777784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               140, 16
               

               Conread position:
               259-530
               

               Cow position:
               chr1:25734804-25735068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               200
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               182, 30
               

               Conread position:
               259-530
               

               Cow position:
               chr1:42398258-42397996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               184
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               63, 41
               

               Conread position:
               259-530
               

               Cow position:
               chr1:43352722-43352453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 102
               

               Conread position:
               259-530
               

               Cow position:
               chr1:44506904-44507168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               53, 164
               

               Conread position:
               259-530
               

               Cow position:
               chr1:47790730-47790468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 138
               

               Conread position:
               259-530
               

               Cow position:
               chr1:49077398-49077123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               178
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               165, 203
               

               Conread position:
               259-530
               

               Cow position:
               chr1:50931041-50930780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               259-530
               

               Cow position:
               chr1:51609309-51609578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               63, 40
               

               Conread position:
               259-530
               

               Cow position:
               chr1:56225723-56225982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               20, 43
               

               Conread position:
               259-530
               

               Cow position:
               chr1:65103555-65103829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               95, 17
               

               Conread position:
               259-530
               

               Cow position:
               chr1:72034989-72034728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               203
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               13, 40
               

               Conread position:
               259-530
               

               Cow position:
               chr1:77620480-77620749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               132, 40
               

               Conread position:
               259-530
               

               Cow position:
               chr1:78091971-78092240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               188
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               259-530
               

               Cow position:
               chr1:79165149-79164882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               184
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               167, 114
               

               Conread position:
               259-530
               

               Cow position:
               chr1:92996960-92996686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               199
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               37, 19
               

               Conread position:
               259-532
               

               Cow position:
               chr1:68217428-68217164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               54, 31
               

               Conread position:
               259-533
               

               Cow position:
               chr1:23488571-23488300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               73, 38
               

               Conread position:
               259-533
               

               Cow position:
               chr1:48444258-48443988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               192, 47
               

               Conread position:
               259-534
               

               Cow position:
               chr1:484530-484259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               202
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               181, 26
               

               Conread position:
               259-534
               

               Cow position:
               chr1:1877965-1878227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               202
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               259-534
               

               Cow position:
               chr1:4243406-4243125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               192
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               54, 40
               

               Conread position:
               259-534
               

               Cow position:
               chr1:11172311-11172572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               259-534
               

               Cow position:
               chr1:16061080-16060804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               210
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               40, 191
               

               Conread position:
               259-534
               

               Cow position:
               chr1:22823839-22824113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 16
               

               Conread position:
               259-534
               

               Cow position:
               chr1:29474412-29474148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               200
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               259-534
               

               Cow position:
               chr1:42482139-42482404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               202
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               249, 31
               

               Conread position:
               259-534
               

               Cow position:
               chr1:42541533-42541795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               259-534
               

               Cow position:
               chr1:43505460-43505728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               37, 194
               

               Conread position:
               259-534
               

               Cow position:
               chr1:51417708-51417969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               194
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               262, 43
               

               Conread position:
               259-534
               

               Cow position:
               chr1:53370017-53370288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               204
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               45, 40
               

               Conread position:
               259-534
               

               Cow position:
               chr1:59518854-59519115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               192
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               43, 109
               

               Conread position:
               259-534
               

               Cow position:
               chr1:64572449-64572718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               186
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               259-534
               

               Cow position:
               chr1:66898561-66898290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               162, 27
               

               Conread position:
               259-534
               

               Cow position:
               chr1:69539633-69539889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               259-534
               

               Cow position:
               chr1:71119452-71119725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               199
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               46, 155
               

               Conread position:
               259-534
               

               Cow position:
               chr1:74084259-74083984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 118
               

               Conread position:
               259-534
               

               Cow position:
               chr1:78068129-78067846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               208
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               190, 42
               

               Conread position:
               259-534
               

               Cow position:
               chr1:96365599-96365853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               259-534
               

               Cow position:
               chr1:97231894-97232175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               205
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               182, 28
               

               Conread position:
               259-537
               

               Cow position:
               chr1:91651424-91651140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               73, 220
               

               Conread position:
               259-538
               

               Cow position:
               chr1:12464730-12464456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               242, 31
               

               Conread position:
               259-538
               

               Cow position:
               chr1:35162345-35162613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               196
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               259-539
               

               Cow position:
               chr1:13548048-13547775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               202
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               98, 30
               

               Conread position:
               259-539
               

               Cow position:
               chr1:40531177-40530876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               40, 87
               

               Conread position:
               259-539
               

               Cow position:
               chr1:47658283-47658557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               259-539
               

               Cow position:
               chr1:61846081-61846368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               185, 30
               

               Conread position:
               259-539
               

               Cow position:
               chr1:66138256-66138531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               208, 42
               

               Conread position:
               259-539
               

               Cow position:
               chr1:73545972-73545699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               86, 38
               

               Conread position:
               259-539
               

               Cow position:
               chr1:97820623-97820893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               194
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               249, 40
               

               Conread position:
               259-540
               

               Cow position:
               chr1:7442919-7443192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               210
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               197, 31
               

               Conread position:
               259-540
               

               Cow position:
               chr1:22147160-22147427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               90, 40
               

               Conread position:
               259-540
               

               Cow position:
               chr1:71399220-71399505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               65, 30
               

               Conread position:
               259-540
               

               Cow position:
               chr1:73458158-73457884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               204
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               159, 31
               

               Conread position:
               259-540
               

               Cow position:
               chr1:75250047-75250322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               204
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               43, 89
               

               Conread position:
               259-540
               

               Cow position:
               chr1:89448833-89449108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               45, 31
               

               Conread position:
               259-540
               

               Cow position:
               chr1:101836982-101837264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               173, 43
               

               Conread position:
               259-541
               

               Cow position:
               chr1:11226309-11226018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               203, 30
               

               Conread position:
               259-541
               

               Cow position:
               chr1:29451855-29452135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               63, 19
               

               Conread position:
               259-541
               

               Cow position:
               chr1:31607959-31607683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               202
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               46, 80
               

               Conread position:
               259-541
               

               Cow position:
               chr1:41289842-41289567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               165, 28
               

               Conread position:
               259-541
               

               Cow position:
               chr1:53374367-53374639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               209
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               49, 40
               

               Conread position:
               259-541
               

               Cow position:
               chr1:98583693-98583959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               190
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               101, 38
               

               Conread position:
               259-542
               

               Cow position:
               chr1:21577745-21578022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 31
               

               Conread position:
               259-542
               

               Cow position:
               chr1:26178877-26178594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               273, 31
               

               Conread position:
               259-542
               

               Cow position:
               chr1:54258498-54258782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 140
               

               Conread position:
               259-542
               

               Cow position:
               chr1:88913254-88913533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               194
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               267, 31
               

               Conread position:
               259-543
               

               Cow position:
               chr1:635749-635471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               259-543
               

               Cow position:
               chr1:76740743-76740459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               194
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               73, 90
               

               Conread position:
               259-543
               

               Cow position:
               chr1:79640355-79640076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               186
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               193, 0
               

               Conread position:
               259-543
               

               Cow position:
               chr1:97794613-97794336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               185, 48
               

               Conread position:
               259-544
               

               Cow position:
               chr1:7229755-7229471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               193
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               72, 42
               

               Conread position:
               259-544
               

               Cow position:
               chr1:71665997-71665720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               259-544
               

               Cow position:
               chr1:94875739-94875451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               189, 60
               

               Conread position:
               259-546
               

               Cow position:
               chr1:47886550-47886266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 49
               

               Conread position:
               259-554
               

               Cow position:
               chr1:30189082-30189381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               259-555
               

               Cow position:
               chr1:38753856-38754142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 0
               

               Conread position:
               259-560
               

               Cow position:
               chr1:16767147-16766857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               217
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               260-461
               

               Cow position:
               chr1:45007401-45007603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               88, 38
               

               Conread position:
               260-467
               

               Cow position:
               chr1:57420790-57420595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               260-505
               

               Cow position:
               chr1:79660465-79660223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               180
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               211, 29
               

               Conread position:
               260-514
               

               Cow position:
               chr1:95557973-95558224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               260-520
               

               Cow position:
               chr1:29626975-29626720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               186
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               260-520
               

               Cow position:
               chr1:89381211-89381464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               260-529
               

               Cow position:
               chr1:14309098-14308830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               213, 0
               

               Conread position:
               260-530
               

               Cow position:
               chr1:82880581-82880831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               190
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               260-541
               

               Cow position:
               chr1:89076692-89076412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               205
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               181, 29
               

               Conread position:
               261-520
               

               Cow position:
               chr1:4391345-4391078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               52, 221
               

               Conread position:
               261-533
               

               Cow position:
               chr1:71228024-71228298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               203
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               20, 39
               

               Conread position:
               261-534
               

               Cow position:
               chr1:4691533-4691792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               187
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               261-537
               

               Cow position:
               chr1:70422243-70422509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               29, 38
               

               Conread position:
               261-541
               

               Cow position:
               chr1:101268070-101267791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               206
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               44, 79
               

               Conread position:
               262-512
               

               Cow position:
               chr1:96305041-96304790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               188
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               28, 202
               

               Conread position:
               262-530
               

               Cow position:
               chr1:30862473-30862213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               196
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               60, 37
               

               Conread position:
               263-453
               

               Cow position:
               chr1:4027807-4027990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               41, 36
               

               Conread position:
               263-467
               

               Cow position:
               chr1:49806292-49806491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               141
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               59, 26
               

               Conread position:
               263-503
               

               Cow position:
               chr1:68618993-68618762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               97, 36
               

               Conread position:
               263-520
               

               Cow position:
               chr1:78809820-78810070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               179, 35
               

               Conread position:
               264-468
               

               Cow position:
               chr1:8347064-8347265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               160
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               264-541
               

               Cow position:
               chr1:22035549-22035820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               203
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               19, 56
               

               Conread position:
               265-468
               

               Cow position:
               chr1:53308452-53308252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               43, 22
               

               Conread position:
               266-444
               

               Cow position:
               chr1:23512716-23512542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               127
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               266-444
               

               Cow position:
               chr1:46764816-46764993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               159, 152
               

               Conread position:
               266-447
               

               Cow position:
               chr1:39069012-39068835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               266-455
               

               Cow position:
               chr1:73936209-73936015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               266-455
               

               Cow position:
               chr1:98511871-98512055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               266-497
               

               Cow position:
               chr1:50964187-50963960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               266-498
               

               Cow position:
               chr1:53520855-53521082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               143, 32
               

               Conread position:
               266-507
               

               Cow position:
               chr1:87197758-87197997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               28, 193
               

               Conread position:
               266-514
               

               Cow position:
               chr1:8559-8802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               266-514
               

               Cow position:
               chr1:43311835-43311584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               30, 211
               

               Conread position:
               266-514
               

               Cow position:
               chr1:45019865-45019622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               30, 185
               

               Conread position:
               266-519
               

               Cow position:
               chr1:6826352-6826103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               183
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               177, 32
               

               Conread position:
               266-519
               

               Cow position:
               chr1:88618538-88618796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               195
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               178, 23
               

               Conread position:
               266-519
               

               Cow position:
               chr1:88926443-88926187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               68, 32
               

               Conread position:
               266-519
               

               Cow position:
               chr1:90976142-90975887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               185
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               175, 28
               

               Conread position:
               266-520
               

               Cow position:
               chr1:5597267-5597022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               171
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               122, 33
               

               Conread position:
               266-520
               

               Cow position:
               chr1:21787273-21787514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               40, 179
               

               Conread position:
               266-520
               

               Cow position:
               chr1:33998699-33998939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               101, 0
               

               Conread position:
               266-520
               

               Cow position:
               chr1:55357342-55357099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               180
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               176, 36
               

               Conread position:
               266-520
               

               Cow position:
               chr1:87072638-87072884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               189
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               33, 82
               

               Conread position:
               266-520
               

               Cow position:
               chr1:95072272-95072533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               176, 0
               

               Conread position:
               266-520
               

               Cow position:
               chr1:100741229-100741472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               171
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               184, 70
               

               Conread position:
               266-524
               

               Cow position:
               chr1:10778509-10778748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               180
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               266-530
               

               Cow position:
               chr1:3815752-3815481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               44, 118
               

               Conread position:
               266-530
               

               Cow position:
               chr1:6287090-6287350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               266-530
               

               Cow position:
               chr1:6304920-6304677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               266-530
               

               Cow position:
               chr1:8374513-8374253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               173, 36
               

               Conread position:
               266-530
               

               Cow position:
               chr1:28563630-28563361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               30, 105
               

               Conread position:
               266-530
               

               Cow position:
               chr1:55429016-55428753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 34
               

               Conread position:
               266-531
               

               Cow position:
               chr1:11913940-11913680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               33, 209
               

               Conread position:
               266-532
               

               Cow position:
               chr1:88397903-88397640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               185
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               42, 23
               

               Conread position:
               266-534
               

               Cow position:
               chr1:724680-724943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               176
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               200, 0
               

               Conread position:
               266-534
               

               Cow position:
               chr1:22525818-22526079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               182
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               260, 180
               

               Conread position:
               266-534
               

               Cow position:
               chr1:25383606-25383873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               27, 74
               

               Conread position:
               266-534
               

               Cow position:
               chr1:68862975-68863223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               189
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               41, 16
               

               Conread position:
               266-534
               

               Cow position:
               chr1:69264753-69265031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               180, 32
               

               Conread position:
               266-534
               

               Cow position:
               chr1:75744803-75745064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               79, 24
               

               Conread position:
               266-534
               

               Cow position:
               chr1:76470598-76470861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               191
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               196, 31
               

               Conread position:
               266-534
               

               Cow position:
               chr1:88359823-88360089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               192
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               189, 31
               

               Conread position:
               266-534
               

               Cow position:
               chr1:95100900-95101155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               154, 31
               

               Conread position:
               266-534
               

               Cow position:
               chr1:102753795-102754054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               192
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               82, 36
               

               Conread position:
               266-537
               

               Cow position:
               chr1:70538550-70538813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               178
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               36, 181
               

               Conread position:
               266-539
               

               Cow position:
               chr1:96081423-96081684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               266-540
               

               Cow position:
               chr1:52139690-52139417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               204
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               67, 33
               

               Conread position:
               266-541
               

               Cow position:
               chr1:58347480-58347208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               66, 24
               

               Conread position:
               266-541
               

               Cow position:
               chr1:79718743-79719019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 90
               

               Conread position:
               266-542
               

               Cow position:
               chr1:102266327-102266058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               196
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               266-560
               

               Cow position:
               chr1:78810980-78811268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               266, 41
               

               Conread position:
               267-512
               

               Cow position:
               chr1:65066772-65066524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               169
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               60, 8
               

               Conread position:
               267-567
               

               Cow position:
               chr1:51533898-51533617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               202
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               268-462
               

               Cow position:
               chr1:97778935-97779127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               140
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               268-536
               

               Cow position:
               chr1:46143518-46143261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               181
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               233, 31
               

               Conread position:
               269-546
               

               Cow position:
               chr1:31819054-31819319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               271-443
               

               Cow position:
               chr1:19885329-19885498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               121
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               271-444
               

               Cow position:
               chr1:3352750-3352582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               126
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               271-450
               

               Cow position:
               chr1:42138804-42138982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               271-457
               

               Cow position:
               chr1:68676309-68676493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               167, 28
               

               Conread position:
               271-468
               

               Cow position:
               chr1:85550130-85549936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               187, 27
               

               Conread position:
               271-468
               

               Cow position:
               chr1:90868493-90868307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               141
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               271-505
               

               Cow position:
               chr1:72105359-72105578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               271-505
               

               Cow position:
               chr1:86578907-86579147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               25, 99
               

               Conread position:
               271-517
               

               Cow position:
               chr1:72068891-72068644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 204
               

               Conread position:
               271-520
               

               Cow position:
               chr1:38418975-38419216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               191
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               184, 28
               

               Conread position:
               271-520
               

               Cow position:
               chr1:72813562-72813807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               271-520
               

               Cow position:
               chr1:81228394-81228146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               27, 193
               

               Conread position:
               271-520
               

               Cow position:
               chr1:100324796-100324568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               271-525
               

               Cow position:
               chr1:53622907-53623149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               271-529
               

               Cow position:
               chr1:49317548-49317302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               271-530
               

               Cow position:
               chr1:15333832-15334088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               27, 104
               

               Conread position:
               271-530
               

               Cow position:
               chr1:62519306-62519566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 75
               

               Conread position:
               271-530
               

               Cow position:
               chr1:78079668-78079923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               154, 23
               

               Conread position:
               271-530
               

               Cow position:
               chr1:99609316-99609567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               8, 29
               

               Conread position:
               271-533
               

               Cow position:
               chr1:100474179-100474442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               178, 204
               

               Conread position:
               271-534
               

               Cow position:
               chr1:7739893-7740147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               185
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               232, 105
               

               Conread position:
               271-534
               

               Cow position:
               chr1:37695962-37695699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               78, 42
               

               Conread position:
               271-534
               

               Cow position:
               chr1:43855249-43855493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               85, 54
               

               Conread position:
               271-534
               

               Cow position:
               chr1:86062035-86061773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               199
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               132, 26
               

               Conread position:
               271-534
               

               Cow position:
               chr1:89388285-89388547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               180
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               88, 184
               

               Conread position:
               271-534
               

               Cow position:
               chr1:91023520-91023264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               181
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               136, 77
               

               Conread position:
               271-534
               

               Cow position:
               chr1:95829171-95828931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               170, 18
               

               Conread position:
               271-534
               

               Cow position:
               chr1:102756481-102756230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               185
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               260, 27
               

               Conread position:
               271-536
               

               Cow position:
               chr1:97717629-97717372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               35, 28
               

               Conread position:
               271-537
               

               Cow position:
               chr1:99642418-99642166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               271-541
               

               Cow position:
               chr1:50432540-50432270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               60, 41
               

               Conread position:
               271-541
               

               Cow position:
               chr1:52662227-52661965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               174
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               271-543
               

               Cow position:
               chr1:71350779-71350511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               271-543
               

               Cow position:
               chr1:74929769-74929495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               61, 27
               

               Conread position:
               272-441
               

               Cow position:
               chr1:37309569-37309404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               272-443
               

               Cow position:
               chr1:82942235-82942399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               126
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               152, 26
               

               Conread position:
               272-443
               

               Cow position:
               chr1:82944323-82944159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               126
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               152, 26
               

               Conread position:
               272-457
               

               Cow position:
               chr1:95974343-95974530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               37, 27
               

               Conread position:
               272-461
               

               Cow position:
               chr1:71796367-71796178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               27, 108
               

               Conread position:
               272-463
               

               Cow position:
               chr1:83084517-83084695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               272-466
               

               Cow position:
               chr1:48730879-48730693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               272-467
               

               Cow position:
               chr1:8624501-8624307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               170, 30
               

               Conread position:
               272-497
               

               Cow position:
               chr1:186328-186105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               182, 111
               

               Conread position:
               272-500
               

               Cow position:
               chr1:48581080-48581300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               172
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               272-504
               

               Cow position:
               chr1:52496719-52496947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               272-506
               

               Cow position:
               chr1:52674227-52673997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               154
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               272-514
               

               Cow position:
               chr1:99512315-99512079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               213, 26
               

               Conread position:
               272-519
               

               Cow position:
               chr1:30983542-30983303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               184
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               151, 22
               

               Conread position:
               272-519
               

               Cow position:
               chr1:56477536-56477774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               32, 172
               

               Conread position:
               272-519
               

               Cow position:
               chr1:98467752-98467991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               186
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               219, 34
               

               Conread position:
               272-520
               

               Cow position:
               chr1:500121-500366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               59, 78
               

               Conread position:
               272-530
               

               Cow position:
               chr1:6394507-6394757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               190
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               272-530
               

               Cow position:
               chr1:18936886-18936637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               191
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               272-530
               

               Cow position:
               chr1:33206927-33206674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               193
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               102, 25
               

               Conread position:
               272-530
               

               Cow position:
               chr1:81390865-81391122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 129
               

               Conread position:
               272-534
               

               Cow position:
               chr1:34771556-34771295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               196
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               177, 30
               

               Conread position:
               272-534
               

               Cow position:
               chr1:42868989-42868746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               272-535
               

               Cow position:
               chr1:15547420-15547671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               185
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               250, 30
               

               Conread position:
               272-536
               

               Cow position:
               chr1:77739664-77739931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 162
               

               Conread position:
               272-541
               

               Cow position:
               chr1:86688207-86687950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               272-542
               

               Cow position:
               chr1:64804156-64803884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               173, 203
               

               Conread position:
               272-548
               

               Cow position:
               chr1:57089735-57089460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 141
               

               Conread position:
               273-445
               

               Cow position:
               chr1:72141524-72141691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               124
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               273-447
               

               Cow position:
               chr1:98594522-98594686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               273-465
               

               Cow position:
               chr1:71643713-71643521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               114, 26
               

               Conread position:
               273-512
               

               Cow position:
               chr1:10030258-10030020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               162
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               49, 17
               

               Conread position:
               273-512
               

               Cow position:
               chr1:61185429-61185195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               273-512
               

               Cow position:
               chr1:70025420-70025184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               273-518
               

               Cow position:
               chr1:5776090-5776334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               169
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               54, 14
               

               Conread position:
               273-519
               

               Cow position:
               chr1:100753478-100753717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               273-525
               

               Cow position:
               chr1:56117405-56117667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               273-529
               

               Cow position:
               chr1:30035162-30035423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               193
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               26, 133
               

               Conread position:
               273-529
               

               Cow position:
               chr1:49753429-49753683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               273-530
               

               Cow position:
               chr1:874600-874863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 201
               

               Conread position:
               273-530
               

               Cow position:
               chr1:23186851-23186602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               31, 17
               

               Conread position:
               273-530
               

               Cow position:
               chr1:82870576-82870315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               123, 29
               

               Conread position:
               273-530
               

               Cow position:
               chr1:83659331-83659075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               200, 0
               

               Conread position:
               273-534
               

               Cow position:
               chr1:100576090-100575837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               183
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               27, 89
               

               Conread position:
               273-548
               

               Cow position:
               chr1:99322620-99322352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               203
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               26, 138
               

               Conread position:
               274-433
               

               Cow position:
               chr1:75141948-75142104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               121
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               274-454
               

               Cow position:
               chr1:84768929-84768751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               130
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               274-534
               

               Cow position:
               chr1:54156783-54156530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 24
               

               Conread position:
               274-539
               

               Cow position:
               chr1:102306192-102305938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               126, 73
               

               Conread position:
               274-544
               

               Cow position:
               chr1:52912948-52912678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               177
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               196, 16
               

               Conread position:
               275-512
               

               Cow position:
               chr1:53603705-53603941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               47, 25
               

               Conread position:
               275-512
               

               Cow position:
               chr1:86279363-86279599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               46, 24
               

               Conread position:
               275-520
               

               Cow position:
               chr1:100551921-100552156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               181
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               93, 31
               

               Conread position:
               275-542
               

               Cow position:
               chr1:7971367-7971616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               70, 23
               

               Conread position:
               276-455
               

               Cow position:
               chr1:94261491-94261664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               276-466
               

               Cow position:
               chr1:84203465-84203651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               138
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               276-510
               

               Cow position:
               chr1:19568802-19569035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               54, 24
               

               Conread position:
               277-530
               

               Cow position:
               chr1:73020709-73020462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               188
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               30, 10
               

               Conread position:
               277-530
               

               Cow position:
               chr1:102105682-102105937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               72, 25
               

               Conread position:
               277-532
               

               Cow position:
               chr1:60490456-60490709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               175
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               164, 23
               

               Conread position:
               277-534
               

               Cow position:
               chr1:74832378-74832632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               167, 21
               

               Conread position:
               277-540
               

               Cow position:
               chr1:60044939-60045197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               280-530
               

               Cow position:
               chr1:65318531-65318777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               280-534
               

               Cow position:
               chr1:56225423-56225670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               167
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               159, 178
               

               Conread position:
               280-534
               

               Cow position:
               chr1:71790193-71789944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               186
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               280-539
               

               Cow position:
               chr1:61742013-61741755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               177
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               101, 87
               

               Conread position:
               280-544
               

               Cow position:
               chr1:84811986-84811727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               181
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               33, 167
               

               Conread position:
               280-548
               

               Cow position:
               chr1:90621552-90621288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               181
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               22, 5
               

               Conread position:
               281-444
               

               Cow position:
               chr1:43312075-43311913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               124
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               133, 21
               

               Conread position:
               281-447
               

               Cow position:
               chr1:30418082-30417927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               123
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               281-520
               

               Cow position:
               chr1:98413725-98413966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               173
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               17, 228
               

               Conread position:
               281-530
               

               Cow position:
               chr1:6854347-6854119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               281-534
               

               Cow position:
               chr1:49825112-49824861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               19, 179
               

               Conread position:
               282-467
               

               Cow position:
               chr1:89742043-89741856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               18, 31
               

               Conread position:
               282-533
               

               Cow position:
               chr1:81569073-81568826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               17, 151
               

               Conread position:
               282-534
               

               Cow position:
               chr1:6166199-6166436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               179
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               23, 71
               

               Conread position:
               282-537
               

               Cow position:
               chr1:94226596-94226337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               158, 17
               

               Conread position:
               283-534
               

               Cow position:
               chr1:13157146-13157398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               185
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               49, 14
               

               Conread position:
               283-543
               

               Cow position:
               chr1:35554865-35555128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               19, 120
               

               Conread position:
               284-458
               

               Cow position:
               chr1:79087904-79087727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               133
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               284-465
               

               Cow position:
               chr1:71916160-71915979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               171, 15
               

               Conread position:
               284-468
               

               Cow position:
               chr1:8670732-8670914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               129
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               284-489
               

               Cow position:
               chr1:54624888-54625093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               152
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               6, 19
               

               Conread position:
               285-530
               

               Cow position:
               chr1:95835836-95835595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               286-532
               

               Cow position:
               chr1:17055957-17056192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               287-530
               

               Cow position:
               chr1:72422446-72422206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               287-534
               

               Cow position:
               chr1:76415917-76415675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               19, 38
               

               Conread position:
               288-520
               

               Cow position:
               chr1:86340502-86340268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               169
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               175, 69
               

               Conread position:
               288-521
               

               Cow position:
               chr1:21093079-21093310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               174
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               182, 140
               

               Conread position:
               288-534
               

               Cow position:
               chr1:197044-196802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               19, 147
               

               Conread position:
               288-536
               

               Cow position:
               chr1:22836363-22836606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               166
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               18, 36
               

               Conread position:
               289-543
               

               Cow position:
               chr1:70227731-70227478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               180, 0
               

               Conread position:
               290-499
               

               Cow position:
               chr1:94687808-94687596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               32, 103
               

               Conread position:
               290-512
               

               Cow position:
               chr1:4539458-4539237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               40, 10
               

               Conread position:
               290-512
               

               Cow position:
               chr1:31765411-31765188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               159
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               40, 185
               

               Conread position:
               290-518
               

               Cow position:
               chr1:66643604-66643832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               151
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               7, 163
               

               Conread position:
               290-521
               

               Cow position:
               chr1:33409661-33409432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               141, 0
               

               Conread position:
               290-527
               

               Cow position:
               chr1:71770347-71770109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               7, 187
               

               Conread position:
               290-530
               

               Cow position:
               chr1:150961-150724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               171
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               32, 10
               

               Conread position:
               290-530
               

               Cow position:
               chr1:52435236-52435475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               183, 0
               

               Conread position:
               291-512
               

               Cow position:
               chr1:648289-648510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               155
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               31, 179
               

               Conread position:
               291-530
               

               Cow position:
               chr1:528107-527883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               31, 45
               

               Conread position:
               291-530
               

               Cow position:
               chr1:72841300-72841540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               160
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               165, 140
               

               Conread position:
               292-543
               

               Cow position:
               chr1:92523979-92524231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               180
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               14, 182
               

               Conread position:
               293-451
               

               Cow position:
               chr1:81629880-81629725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               118
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               293-542
               

               Cow position:
               chr1:81858937-81858689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 160
               

               Conread position:
               294-471
               

               Cow position:
               chr1:3914950-3914777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               130
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               294-530
               

               Cow position:
               chr1:67919103-67919328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               169
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               141, 0
               

               Conread position:
               294-534
               

               Cow position:
               chr1:14006083-14006329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               172
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               19, 186
               

               Conread position:
               295-444
               

               Cow position:
               chr1:85712409-85712557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               113
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               132, 0
               

               Conread position:
               295-514
               

               Cow position:
               chr1:66752659-66752448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               296-505
               

               Cow position:
               chr1:85818221-85818427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               176, 0
               

               Conread position:
               296-534
               

               Cow position:
               chr1:72092653-72092419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               154, 0
               

               Conread position:
               296-539
               

               Cow position:
               chr1:90267688-90267933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 49
               

               Conread position:
               297-529
               

               Cow position:
               chr1:85867558-85867799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               169
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               297-539
               

               Cow position:
               chr1:43148578-43148328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               10, 218
               

               Conread position:
               299-520
               

               Cow position:
               chr1:5637086-5636882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               87, 148
               

               Conread position:
               299-530
               

               Cow position:
               chr1:7748186-7748416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               154, 176
               

               Conread position:
               299-530
               

               Cow position:
               chr1:7752352-7752580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               174, 0
               

               Conread position:
               299-530
               

               Cow position:
               chr1:102648251-102648480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               172
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               158, 0
               

               Conread position:
               299-534
               

               Cow position:
               chr1:1496561-1496323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               179
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               14, 178
               

               Conread position:
               299-534
               

               Cow position:
               chr1:31934480-31934708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               158, 0
               

               Conread position:
               299-534
               

               Cow position:
               chr1:37918217-37917975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               170
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               14, 184
               

               Conread position:
               300-530
               

               Cow position:
               chr1:44611734-44611504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               22, 174
               

               Conread position:
               300-539
               

               Cow position:
               chr1:95618615-95618850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               178
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               13, 147
               

               Conread position:
               300-540
               

               Cow position:
               chr1:53394037-53394285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               9, 109
               

               Conread position:
               301-436
               

               Cow position:
               chr1:73682268-73682132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               102
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               301-455
               

               Cow position:
               chr1:20864032-20864182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               301-512
               

               Cow position:
               chr1:75209115-75209327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               21, 128
               

               Conread position:
               301-526
               

               Cow position:
               chr1:63078985-63079197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               301-530
               

               Cow position:
               chr1:49980685-49980908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               301-530
               

               Cow position:
               chr1:73721335-73721564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               118, 132
               

               Conread position:
               301-530
               

               Cow position:
               chr1:76735504-76735279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               12, 68
               

               Conread position:
               301-531
               

               Cow position:
               chr1:67529030-67529257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               173
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               171, 0
               

               Conread position:
               301-534
               

               Cow position:
               chr1:61884888-61885116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               136, 0
               

               Conread position:
               301-534
               

               Cow position:
               chr1:78857354-78857122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               172, 0
               

               Conread position:
               301-543
               

               Cow position:
               chr1:70094309-70094551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               31, 109
               

               Conread position:
               301-545
               

               Cow position:
               chr1:55753240-55753004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               165
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               64, 42
               

               Conread position:
               301-548
               

               Cow position:
               chr1:75382956-75383180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               301-583
               

               Cow position:
               chr1:41027050-41027328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               106, 69
               

               Conread position:
               302-441
               

               Cow position:
               chr1:95215214-95215075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               107
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               302-454
               

               Cow position:
               chr1:67114869-67115022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               115
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               302-509
               

               Cow position:
               chr1:57637332-57637539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               20, 172
               

               Conread position:
               302-512
               

               Cow position:
               chr1:18152435-18152645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               20, 178
               

               Conread position:
               302-512
               

               Cow position:
               chr1:60961961-60962170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               141
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               18, 145
               

               Conread position:
               302-512
               

               Cow position:
               chr1:68688166-68688376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               24, 82
               

               Conread position:
               302-512
               

               Cow position:
               chr1:75411864-75411654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               20, 172
               

               Conread position:
               302-512
               

               Cow position:
               chr1:85580604-85580814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               20, 178
               

               Conread position:
               302-512
               

               Cow position:
               chr1:92370394-92370186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               143
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               20, 130
               

               Conread position:
               302-514
               

               Cow position:
               chr1:53327772-53327567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               29, 135
               

               Conread position:
               302-514
               

               Cow position:
               chr1:69227465-69227265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               302-514
               

               Cow position:
               chr1:71078984-71078778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               134, 0
               

               Conread position:
               302-518
               

               Cow position:
               chr1:6867490-6867274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               145
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               20, 172
               

               Conread position:
               302-519
               

               Cow position:
               chr1:70297253-70297471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               151
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               302-520
               

               Cow position:
               chr1:8287654-8287440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               165
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               114, 0
               

               Conread position:
               302-520
               

               Cow position:
               chr1:87095238-87095021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               169
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               171, 0
               

               Conread position:
               302-529
               

               Cow position:
               chr1:3757675-3757446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               16, 58
               

               Conread position:
               302-530
               

               Cow position:
               chr1:38278052-38277826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               170
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               129, 0
               

               Conread position:
               302-530
               

               Cow position:
               chr1:76037541-76037312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               163
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               11, 178
               

               Conread position:
               302-530
               

               Cow position:
               chr1:79591073-79591304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               25, 115
               

               Conread position:
               302-530
               

               Cow position:
               chr1:84906088-84905860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               20, 130
               

               Conread position:
               302-530
               

               Cow position:
               chr1:98046027-98046251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               25, 141
               

               Conread position:
               302-532
               

               Cow position:
               chr1:91755255-91755485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               18, 171
               

               Conread position:
               302-534
               

               Cow position:
               chr1:14759385-14759152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               29, 177
               

               Conread position:
               302-534
               

               Cow position:
               chr1:16962034-16961790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               138, 184
               

               Conread position:
               302-534
               

               Cow position:
               chr1:22192745-22192974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               152, 0
               

               Conread position:
               302-534
               

               Cow position:
               chr1:36688402-36688176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               174
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               119, 0
               

               Conread position:
               302-534
               

               Cow position:
               chr1:102468640-102468418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               302-537
               

               Cow position:
               chr1:6731157-6731386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               178
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               302-539
               

               Cow position:
               chr1:21560988-21561229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               136, 176
               

               Conread position:
               302-540
               

               Cow position:
               chr1:96038824-96038586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               229, 137
               

               Conread position:
               302-542
               

               Cow position:
               chr1:10881106-10880865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               107, 130
               

               Conread position:
               302-542
               

               Cow position:
               chr1:35491599-35491362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               130, 32
               

               Conread position:
               302-544
               

               Cow position:
               chr1:61035551-61035309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               20, 146
               

               Conread position:
               302-548
               

               Cow position:
               chr1:17875731-17875495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               174
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               303-447
               

               Cow position:
               chr1:76436457-76436601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               109
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               303-454
               

               Cow position:
               chr1:42178717-42178873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               303-457
               

               Cow position:
               chr1:80757114-80756964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               303-503
               

               Cow position:
               chr1:867781-867980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               137
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               61, 25
               

               Conread position:
               303-512
               

               Cow position:
               chr1:3419782-3419989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               139
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               143, 0
               

               Conread position:
               303-512
               

               Cow position:
               chr1:91649441-91649233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               150
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               19, 77
               

               Conread position:
               303-518
               

               Cow position:
               chr1:63530535-63530747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               143, 0
               

               Conread position:
               303-520
               

               Cow position:
               chr1:20125775-20125985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               142, 9
               

               Conread position:
               303-520
               

               Cow position:
               chr1:99629154-99629352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               303-520
               

               Cow position:
               chr1:102768156-102768365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               12, 66
               

               Conread position:
               303-526
               

               Cow position:
               chr1:11729153-11729366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               303-529
               

               Cow position:
               chr1:101834796-101835015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               136, 64
               

               Conread position:
               303-530
               

               Cow position:
               chr1:1379975-1380201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               32, 23
               

               Conread position:
               303-530
               

               Cow position:
               chr1:36079800-36080027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               156
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               19, 171
               

               Conread position:
               303-530
               

               Cow position:
               chr1:43872342-43872109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               147, 80
               

               Conread position:
               303-530
               

               Cow position:
               chr1:63596078-63595851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               160
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               27, 171
               

               Conread position:
               303-530
               

               Cow position:
               chr1:68961305-68961527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               303-530
               

               Cow position:
               chr1:84104084-84103858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               167
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               170, 0
               

               Conread position:
               303-532
               

               Cow position:
               chr1:26895835-26895610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               19, 141
               

               Conread position:
               303-534
               

               Cow position:
               chr1:6760057-6759840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               303-534
               

               Cow position:
               chr1:38706877-38706649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               177
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               143, 0
               

               Conread position:
               303-534
               

               Cow position:
               chr1:55229953-55230177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               174
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               154, 0
               

               Conread position:
               303-534
               

               Cow position:
               chr1:74751658-74751424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               41, 174
               

               Conread position:
               303-534
               

               Cow position:
               chr1:77986448-77986212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               29, 176
               

               Conread position:
               303-534
               

               Cow position:
               chr1:82936620-82936401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               104, 114
               

               Conread position:
               303-537
               

               Cow position:
               chr1:100823014-100823247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 45
               

               Conread position:
               303-542
               

               Cow position:
               chr1:58653464-58653225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               231, 176
               

               Conread position:
               303-542
               

               Cow position:
               chr1:91861323-91861084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               23, 52
               

               Conread position:
               303-543
               

               Cow position:
               chr1:63992359-63992121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               57, 108
               

               Conread position:
               304-447
               

               Cow position:
               chr1:37558169-37558311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               106
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               116, 0
               

               Conread position:
               304-457
               

               Cow position:
               chr1:54157272-54157427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               304-468
               

               Cow position:
               chr1:33996945-33996782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               120
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               304-505
               

               Cow position:
               chr1:49433287-49433086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               148
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               9, 170
               

               Conread position:
               304-511
               

               Cow position:
               chr1:92580735-92580940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               18, 121
               

               Conread position:
               304-514
               

               Cow position:
               chr1:82374651-82374865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               74, 68
               

               Conread position:
               304-514
               

               Cow position:
               chr1:101792141-101791933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               140, 120
               

               Conread position:
               304-519
               

               Cow position:
               chr1:22730712-22730922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               156
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               135, 0
               

               Conread position:
               304-520
               

               Cow position:
               chr1:101177493-101177712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               99, 94
               

               Conread position:
               304-530
               

               Cow position:
               chr1:86057093-86056878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               304-530
               

               Cow position:
               chr1:89871945-89872168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               161
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               304-533
               

               Cow position:
               chr1:98897716-98897487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               163
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               137, 170
               

               Conread position:
               304-534
               

               Cow position:
               chr1:21955394-21955168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               171
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               304-534
               

               Cow position:
               chr1:98421978-98422208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               135, 44
               

               Conread position:
               304-537
               

               Cow position:
               chr1:22637452-22637218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               172
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               9, 94
               

               Conread position:
               304-540
               

               Cow position:
               chr1:42887299-42887070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               103, 116
               

               Conread position:
               304-542
               

               Cow position:
               chr1:4055430-4055657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               304-546
               

               Cow position:
               chr1:84010750-84011004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               148, 97
               

               Conread position:
               304-760
               

               Cow position:
               chr1:52488002-52487548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               112, 0
               

               Conread position:
               305-465
               

               Cow position:
               chr1:24791967-24791807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               116
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               305-512
               

               Cow position:
               chr1:79846273-79846065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               17, 176
               

               Conread position:
               305-516
               

               Cow position:
               chr1:36920996-36921208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               17, 169
               

               Conread position:
               305-530
               

               Cow position:
               chr1:46245770-46245536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               63, 109
               

               Conread position:
               305-530
               

               Cow position:
               chr1:67585539-67585751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               99, 0
               

               Conread position:
               305-534
               

               Cow position:
               chr1:83972743-83972968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               131, 49
               

               Conread position:
               305-543
               

               Cow position:
               chr1:50765591-50765827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               306-472
               

               Cow position:
               chr1:74082002-74081837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               124
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               7, 124
               

               Conread position:
               306-508
               

               Cow position:
               chr1:2122591-2122389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               137
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               7, 168
               

               Conread position:
               306-530
               

               Cow position:
               chr1:20871579-20871356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               170
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               167, 0
               

               Conread position:
               306-530
               

               Cow position:
               chr1:78794252-78794036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               7, 144
               

               Conread position:
               306-539
               

               Cow position:
               chr1:81515213-81515448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               176
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               143, 174
               

               Conread position:
               307-468
               

               Cow position:
               chr1:67918738-67918899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               307-512
               

               Cow position:
               chr1:96783800-96783596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               145
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               101, 27
               

               Conread position:
               307-530
               

               Cow position:
               chr1:8271873-8271652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               165, 0
               

               Conread position:
               307-532
               

               Cow position:
               chr1:49334411-49334190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               171
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               124, 47
               

               Conread position:
               307-541
               

               Cow position:
               chr1:26201217-26201446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               227, 42
               

               Conread position:
               307-542
               

               Cow position:
               chr1:4362074-4361840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               32, 16
               

               Conread position:
               307-543
               

               Cow position:
               chr1:26983991-26984226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               173
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               224, 53
               

               Conread position:
               308-503
               

               Cow position:
               chr1:75189767-75189964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               125, 77
               

               Conread position:
               308-530
               

               Cow position:
               chr1:852152-852373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               167
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               163, 0
               

               Conread position:
               308-530
               

               Cow position:
               chr1:4444861-4444639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               9, 164
               

               Conread position:
               308-533
               

               Cow position:
               chr1:100421805-100422023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               10, 95
               

               Conread position:
               308-534
               

               Cow position:
               chr1:36998168-36998386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               308-534
               

               Cow position:
               chr1:51860579-51860360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               149, 0
               

               Conread position:
               308-539
               

               Cow position:
               chr1:24909070-24908834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               24, 132
               

               Conread position:
               308-543
               

               Cow position:
               chr1:57087824-57088065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               177
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               24, 99
               

               Conread position:
               309-518
               

               Cow position:
               chr1:69940840-69940636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               152
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               132, 0
               

               Conread position:
               309-520
               

               Cow position:
               chr1:73719444-73719661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               136, 0
               

               Conread position:
               309-530
               

               Cow position:
               chr1:9637011-9637230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               17, 117
               

               Conread position:
               309-534
               

               Cow position:
               chr1:72011830-72011618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               136, 0
               

               Conread position:
               309-534
               

               Cow position:
               chr1:85688161-85688389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               165
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               131, 89
               

               Conread position:
               309-540
               

               Cow position:
               chr1:5751296-5751525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               177
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               164, 0
               

               Conread position:
               310-541
               

               Cow position:
               chr1:96558866-96558632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               175
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               21, 164
               

               Conread position:
               311-504
               

               Cow position:
               chr1:6031609-6031801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               147
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               160, 0
               

               Conread position:
               312-450
               

               Cow position:
               chr1:24570961-24570823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               103
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               312-519
               

               Cow position:
               chr1:61011167-61011364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               146, 0
               

               Conread position:
               312-519
               

               Cow position:
               chr1:65638901-65639112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               130, 12
               

               Conread position:
               312-530
               

               Cow position:
               chr1:2075364-2075150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               19, 38
               

               Conread position:
               312-534
               

               Cow position:
               chr1:74027251-74027025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               67, 45
               

               Conread position:
               312-534
               

               Cow position:
               chr1:92075475-92075684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               312-541
               

               Cow position:
               chr1:242543-242763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               164
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               134, 0
               

               Conread position:
               312-543
               

               Cow position:
               chr1:3605900-3605671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               162
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               89, 129
               

               Conread position:
               313-501
               

               Cow position:
               chr1:96184002-96183812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               135
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               41, 144
               

               Conread position:
               313-520
               

               Cow position:
               chr1:6381759-6381966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               154, 99
               

               Conread position:
               313-538
               

               Cow position:
               chr1:6790762-6790982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               171
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               313-542
               

               Cow position:
               chr1:48447459-48447682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               16, 36
               

               Conread position:
               314-519
               

               Cow position:
               chr1:46035964-46035759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               8, 166
               

               Conread position:
               314-530
               

               Cow position:
               chr1:4582538-4582750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               164
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               8, 65
               

               Conread position:
               314-534
               

               Cow position:
               chr1:31795017-31794804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               315-466
               

               Cow position:
               chr1:64019532-64019381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               109
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               315-468
               

               Cow position:
               chr1:19304561-19304712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               117
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               315-530
               

               Cow position:
               chr1:6440560-6440346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               76, 71
               

               Conread position:
               315-534
               

               Cow position:
               chr1:24133071-24132858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               207, 52
               

               Conread position:
               315-548
               

               Cow position:
               chr1:759429-759198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               134, 159
               

               Conread position:
               315-548
               

               Cow position:
               chr1:26934280-26934050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               129, 13
               

               Conread position:
               315-548
               

               Cow position:
               chr1:45315647-45315413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               152, 160
               

               Conread position:
               315-548
               

               Cow position:
               chr1:101916155-101916390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               181, 152
               

               Conread position:
               316-514
               

               Cow position:
               chr1:61005572-61005376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               316-521
               

               Cow position:
               chr1:22461248-22461048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               135, 0
               

               Conread position:
               316-530
               

               Cow position:
               chr1:95152861-95153074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               168
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 0
               

               Conread position:
               316-531
               

               Cow position:
               chr1:60564354-60564574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               316-534
               

               Cow position:
               chr1:33846579-33846366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               115, 0
               

               Conread position:
               318-520
               

               Cow position:
               chr1:101280742-101280547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               318-533
               

               Cow position:
               chr1:21681545-21681331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               155, 0
               

               Conread position:
               318-540
               

               Cow position:
               chr1:97540627-97540849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               121, 156
               

               Conread position:
               319-470
               

               Cow position:
               chr1:92603011-92603163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               116
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               319-505
               

               Cow position:
               chr1:51435772-51435957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               154, 0
               

               Conread position:
               319-505
               

               Cow position:
               chr1:87083622-87083807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               134
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               154, 0
               

               Conread position:
               319-508
               

               Cow position:
               chr1:6398767-6398955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               129
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               154, 0
               

               Conread position:
               319-512
               

               Cow position:
               chr1:802322-802130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               132
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               154, 0
               

               Conread position:
               319-512
               

               Cow position:
               chr1:72103843-72104036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               128, 155
               

               Conread position:
               319-520
               

               Cow position:
               chr1:14567642-14567452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               141
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               319-530
               

               Cow position:
               chr1:29481638-29481427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               93, 155
               

               Conread position:
               319-530
               

               Cow position:
               chr1:75247759-75247969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               141, 112
               

               Conread position:
               319-543
               

               Cow position:
               chr1:1489408-1489191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               216, 15
               

               Conread position:
               320-520
               

               Cow position:
               chr1:101525931-101525730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               143
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               131, 155
               

               Conread position:
               320-532
               

               Cow position:
               chr1:29329535-29329748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               321-488
               

               Cow position:
               chr1:67539553-67539720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               29, 47
               

               Conread position:
               321-512
               

               Cow position:
               chr1:1495110-1495299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               158, 0
               

               Conread position:
               321-512
               

               Cow position:
               chr1:54694615-54694806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               135
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               43, 153
               

               Conread position:
               324-468
               

               Cow position:
               chr1:82877183-82877326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               106
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               127, 0
               

               Conread position:
               324-511
               

               Cow position:
               chr1:11832781-11832594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               129
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               108, 150
               

               Conread position:
               324-530
               

               Cow position:
               chr1:844783-844987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               142
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               10, 17
               

               Conread position:
               324-530
               

               Cow position:
               chr1:54558335-54558131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               107, 0
               

               Conread position:
               324-543
               

               Cow position:
               chr1:101007431-101007223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               152
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               324-544
               

               Cow position:
               chr1:54723342-54723564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               150
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               123, 107
               

               Conread position:
               324-548
               

               Cow position:
               chr1:76739912-76739694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               207, 132
               

               Conread position:
               325-468
               

               Cow position:
               chr1:46100843-46100698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               111
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               325-530
               

               Cow position:
               chr1:8172326-8172123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               137
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               326-528
               

               Cow position:
               chr1:82336678-82336869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               151
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               327-542
               

               Cow position:
               chr1:49297652-49297863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               112, 0
               

               Conread position:
               328-498
               

               Cow position:
               chr1:83606448-83606279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               144, 0
               

               Conread position:
               329-520
               

               Cow position:
               chr1:29644162-29643972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               111
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               59, 84
               

               Conread position:
               329-530
               

               Cow position:
               chr1:9478617-9478417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               137, 16
               

               Conread position:
               329-534
               

               Cow position:
               chr1:15488803-15489006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               138
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               329-535
               

               Cow position:
               chr1:73551507-73551297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               152
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               72, 153
               

               Conread position:
               330-542
               

               Cow position:
               chr1:63994551-63994343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               168
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               111, 0
               

               Conread position:
               331-528
               

               Cow position:
               chr1:98619203-98619400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               7, 143
               

               Conread position:
               332-512
               

               Cow position:
               chr1:52450777-52450948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               133
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               117, 0
               

               Conread position:
               332-514
               

               Cow position:
               chr1:31630281-31630099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               127, 142
               

               Conread position:
               332-520
               

               Cow position:
               chr1:78793997-78793813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               53, 119
               

               Conread position:
               332-520
               

               Cow position:
               chr1:96201310-96201125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               332-534
               

               Cow position:
               chr1:4294350-4294549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               332-540
               

               Cow position:
               chr1:731970-731759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               21, 147
               

               Conread position:
               333-517
               

               Cow position:
               chr1:69691708-69691525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               140, 0
               

               Conread position:
               333-518
               

               Cow position:
               chr1:50708157-50708341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               140, 0
               

               Conread position:
               333-530
               

               Cow position:
               chr1:20537214-20537402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               150
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               333-530
               

               Cow position:
               chr1:31231735-31231540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               140, 0
               

               Conread position:
               333-534
               

               Cow position:
               chr1:76518429-76518629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               156
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               140, 0
               

               Conread position:
               333-539
               

               Cow position:
               chr1:13685093-13684897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               144
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               333-542
               

               Cow position:
               chr1:81473162-81473370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               138, 0
               

               Conread position:
               333-543
               

               Cow position:
               chr1:34001054-34001256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               41, 36
               

               Conread position:
               333-544
               

               Cow position:
               chr1:92792059-92792266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               127, 14
               

               Conread position:
               334-530
               

               Cow position:
               chr1:15875668-15875859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               146
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               105, 0
               

               Conread position:
               335-513
               

               Cow position:
               chr1:69532514-69532343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               118, 0
               

               Conread position:
               335-517
               

               Cow position:
               chr1:5200408-5200227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               130
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               138, 0
               

               Conread position:
               335-530
               

               Cow position:
               chr1:4367793-4367600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               103, 139
               

               Conread position:
               335-530
               

               Cow position:
               chr1:101883385-101883191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               142, 0
               

               Conread position:
               335-541
               

               Cow position:
               chr1:46886238-46886440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               151
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               110, 139
               

               Conread position:
               335-548
               

               Cow position:
               chr1:1085466-1085679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               195, 138
               

               Conread position:
               336-482
               

               Cow position:
               chr1:79409461-79409603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               112
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               95, 111
               

               Conread position:
               336-519
               

               Cow position:
               chr1:78030022-78029837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               105, 142
               

               Conread position:
               336-520
               

               Cow position:
               chr1:69411688-69411505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               12, 138
               

               Conread position:
               336-524
               

               Cow position:
               chr1:81638558-81638733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               113, 0
               

               Conread position:
               336-529
               

               Cow position:
               chr1:46172615-46172804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               113, 138
               

               Conread position:
               336-530
               

               Cow position:
               chr1:25022065-25021878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               336-530
               

               Cow position:
               chr1:56913519-56913332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               336-530
               

               Cow position:
               chr1:63240983-63241176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               139, 0
               

               Conread position:
               336-530
               

               Cow position:
               chr1:87149805-87149616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               115, 0
               

               Conread position:
               336-530
               

               Cow position:
               chr1:99637244-99637051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               137, 0
               

               Conread position:
               336-534
               

               Cow position:
               chr1:15628292-15628483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               24, 29
               

               Conread position:
               336-534
               

               Cow position:
               chr1:31340761-31340563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               155
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               176, 136
               

               Conread position:
               336-534
               

               Cow position:
               chr1:60603567-60603366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               159
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               116, 141
               

               Conread position:
               336-534
               

               Cow position:
               chr1:61146130-61146321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               145
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               336-534
               

               Cow position:
               chr1:86486686-86486885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               194, 135
               

               Conread position:
               336-534
               

               Cow position:
               chr1:98557109-98556914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               115, 0
               

               Conread position:
               336-535
               

               Cow position:
               chr1:21573550-21573747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               336-539
               

               Cow position:
               chr1:85622539-85622741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               158
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               137, 0
               

               Conread position:
               336-541
               

               Cow position:
               chr1:4427715-4427505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               152
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               34, 46
               

               Conread position:
               336-541
               

               Cow position:
               chr1:81364270-81364475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               198, 135
               

               Conread position:
               336-542
               

               Cow position:
               chr1:68710287-68710496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               163
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               12, 145
               

               Conread position:
               336-543
               

               Cow position:
               chr1:98380287-98380082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               336-547
               

               Cow position:
               chr1:58420213-58420415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               337-461
               

               Cow position:
               chr1:45673765-45673889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               97
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               337-520
               

               Cow position:
               chr1:81668806-81668622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               110, 138
               

               Conread position:
               337-530
               

               Cow position:
               chr1:1347624-1347434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               139
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               141, 0
               

               Conread position:
               337-541
               

               Cow position:
               chr1:67291163-67291371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               157
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               140, 38
               

               Conread position:
               337-560
               

               Cow position:
               chr1:32014207-32014422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               164
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               184, 112
               

               Conread position:
               338-469
               

               Cow position:
               chr1:90817003-90817135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               101
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               104, 0
               

               Conread position:
               338-496
               

               Cow position:
               chr1:12090362-12090513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               119
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               338-529
               

               Cow position:
               chr1:95156952-95156766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               132
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               113, 0
               

               Conread position:
               338-530
               

               Cow position:
               chr1:5821525-5821716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               135, 0
               

               Conread position:
               338-534
               

               Cow position:
               chr1:73534629-73534438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               338-534
               

               Cow position:
               chr1:84782739-84782544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               138
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               135, 0
               

               Conread position:
               339-520
               

               Cow position:
               chr1:77460691-77460871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               132
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               108, 77
               

               Conread position:
               339-537
               

               Cow position:
               chr1:40303564-40303755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               118, 0
               

               Conread position:
               339-537
               

               Cow position:
               chr1:94823379-94823182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               145
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               134, 0
               

               Conread position:
               339-540
               

               Cow position:
               chr1:77685968-77685768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               134, 0
               

               Conread position:
               339-543
               

               Cow position:
               chr1:96518706-96518915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               114, 140
               

               Conread position:
               339-548
               

               Cow position:
               chr1:3118387-3118595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               138, 0
               

               Conread position:
               341-511
               

               Cow position:
               chr1:7245940-7245773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               342-511
               

               Cow position:
               chr1:47242447-47242279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               131, 0
               

               Conread position:
               342-520
               

               Cow position:
               chr1:40181609-40181431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               139
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               41, 132
               

               Conread position:
               342-520
               

               Cow position:
               chr1:88391119-88391291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               129
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               342-521
               

               Cow position:
               chr1:63905243-63905073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               342-530
               

               Cow position:
               chr1:4573740-4573925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               138
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               342-530
               

               Cow position:
               chr1:89298094-89297907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               168, 59
               

               Conread position:
               342-530
               

               Cow position:
               chr1:89301703-89301516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               168, 59
               

               Conread position:
               342-534
               

               Cow position:
               chr1:39684128-39683937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               119, 67
               

               Conread position:
               342-534
               

               Cow position:
               chr1:63460894-63461082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               342-534
               

               Cow position:
               chr1:65030083-65030274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               139
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               131, 0
               

               Conread position:
               342-534
               

               Cow position:
               chr1:97773429-97773619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               131, 0
               

               Conread position:
               342-536
               

               Cow position:
               chr1:95703821-95704012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               145
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               189, 53
               

               Conread position:
               342-543
               

               Cow position:
               chr1:92915521-92915716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               131, 0
               

               Conread position:
               343-530
               

               Cow position:
               chr1:54569715-54569901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               130, 0
               

               Conread position:
               343-530
               

               Cow position:
               chr1:64457982-64458172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               138
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               116, 134
               

               Conread position:
               343-530
               

               Cow position:
               chr1:68897254-68897068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               94, 104
               

               Conread position:
               343-539
               

               Cow position:
               chr1:29671207-29671011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               136
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               121, 132
               

               Conread position:
               343-539
               

               Cow position:
               chr1:53442095-53441906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               105, 63
               

               Conread position:
               344-530
               

               Cow position:
               chr1:11887843-11887651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               37, 135
               

               Conread position:
               345-520
               

               Cow position:
               chr1:53402800-53402974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               143
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               128, 0
               

               Conread position:
               345-530
               

               Cow position:
               chr1:1606115-1605931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               134
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               125, 30
               

               Conread position:
               345-544
               

               Cow position:
               chr1:34324037-34323844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               138
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               128, 0
               

               Conread position:
               345-544
               

               Cow position:
               chr1:74919960-74919761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               103, 133
               

               Conread position:
               346-512
               

               Cow position:
               chr1:55297151-55296986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               127, 0
               

               Conread position:
               347-534
               

               Cow position:
               chr1:64887486-64887305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               348-514
               

               Cow position:
               chr1:7305990-7306153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               349-507
               

               Cow position:
               chr1:70146888-70146731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               349-518
               

               Cow position:
               chr1:23372882-23373049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               135
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               349-519
               

               Cow position:
               chr1:78781997-78782175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               10, 137
               

               Conread position:
               349-520
               

               Cow position:
               chr1:5872756-5872584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               76, 82
               

               Conread position:
               349-520
               

               Cow position:
               chr1:90904733-90904567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               349-524
               

               Cow position:
               chr1:23633907-23633733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               349-525
               

               Cow position:
               chr1:77404887-77404708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               109, 133
               

               Conread position:
               349-525
               

               Cow position:
               chr1:78034881-78034710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               135
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               349-530
               

               Cow position:
               chr1:32217265-32217438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               349-530
               

               Cow position:
               chr1:101691903-101692075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               349-532
               

               Cow position:
               chr1:47967000-47966818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               349-534
               

               Cow position:
               chr1:3244234-3244418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               349-534
               

               Cow position:
               chr1:5010813-5010629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               128, 0
               

               Conread position:
               349-534
               

               Cow position:
               chr1:47468058-47467874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               130, 0
               

               Conread position:
               349-534
               

               Cow position:
               chr1:67616784-67616967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               134
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               30, 19
               

               Conread position:
               349-536
               

               Cow position:
               chr1:98415610-98415800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               143
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               92, 131
               

               Conread position:
               349-539
               

               Cow position:
               chr1:102797975-102797790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               173, 124
               

               Conread position:
               349-542
               

               Cow position:
               chr1:71636300-71636116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               349-542
               

               Cow position:
               chr1:95675697-95675886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               137
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               37, 125
               

               Conread position:
               349-543
               

               Cow position:
               chr1:49759564-49759758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               177, 124
               

               Conread position:
               349-543
               

               Cow position:
               chr1:96477838-96478030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               349-544
               

               Cow position:
               chr1:41056701-41056894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               141
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               58, 68
               

               Conread position:
               349-546
               

               Cow position:
               chr1:4618720-4618526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               129, 0
               

               Conread position:
               349-548
               

               Cow position:
               chr1:71946061-71945862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               113, 126
               

               Conread position:
               349-548
               

               Cow position:
               chr1:84141677-84141874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               101, 0
               

               Conread position:
               349-573
               

               Cow position:
               chr1:86840922-86841143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               154
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               350-518
               

               Cow position:
               chr1:82861829-82861996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               129, 0
               

               Conread position:
               350-533
               

               Cow position:
               chr1:102730738-102730555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               130
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               93, 125
               

               Conread position:
               350-534
               

               Cow position:
               chr1:19599337-19599156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               151
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               350-544
               

               Cow position:
               chr1:101725737-101725544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               351-530
               

               Cow position:
               chr1:78784879-78784701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               125
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               351-534
               

               Cow position:
               chr1:91937742-91937917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               133
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               352-530
               

               Cow position:
               chr1:81466942-81466764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               89, 73
               

               Conread position:
               352-539
               

               Cow position:
               chr1:46795784-46795966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               180, 36
               

               Conread position:
               352-541
               

               Cow position:
               chr1:60403792-60403981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               139
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               182, 121
               

               Conread position:
               353-530
               

               Cow position:
               chr1:79178655-79178831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               140
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               353-534
               

               Cow position:
               chr1:4587851-4587667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               129
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               97, 124
               

               Conread position:
               354-485
               

               Cow position:
               chr1:37543758-37543628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               109
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               119, 0
               

               Conread position:
               354-487
               

               Cow position:
               chr1:97627821-97627688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               103
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               123, 115
               

               Conread position:
               354-513
               

               Cow position:
               chr1:81471383-81471534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               354-514
               

               Cow position:
               chr1:34731072-34731231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               125
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               119, 0
               

               Conread position:
               354-519
               

               Cow position:
               chr1:83683143-83682982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               354-520
               

               Cow position:
               chr1:70416732-70416570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               125
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               354-524
               

               Cow position:
               chr1:69378571-69378404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               124
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               354-527
               

               Cow position:
               chr1:79631507-79631337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               354-529
               

               Cow position:
               chr1:89437690-89437529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               354-530
               

               Cow position:
               chr1:46939857-46939677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               76, 124
               

               Conread position:
               354-530
               

               Cow position:
               chr1:94713137-94712963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               354-530
               

               Cow position:
               chr1:95049838-95049665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               129
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               109, 92
               

               Conread position:
               354-534
               

               Cow position:
               chr1:30469809-30469988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               133
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               118, 0
               

               Conread position:
               354-534
               

               Cow position:
               chr1:46004309-46004478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               103, 0
               

               Conread position:
               354-534
               

               Cow position:
               chr1:100800741-100800565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               25, 90
               

               Conread position:
               354-539
               

               Cow position:
               chr1:42175755-42175940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               72, 65
               

               Conread position:
               354-543
               

               Cow position:
               chr1:1802195-1802379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               148
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               119, 0
               

               Conread position:
               354-543
               

               Cow position:
               chr1:83677296-83677111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               144
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               181, 75
               

               Conread position:
               354-545
               

               Cow position:
               chr1:2317346-2317141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               87, 129
               

               Conread position:
               354-546
               

               Cow position:
               chr1:31672969-31672776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               108
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               87, 120
               

               Conread position:
               354-548
               

               Cow position:
               chr1:31846028-31846217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               168, 21
               

               Conread position:
               354-548
               

               Cow position:
               chr1:97986421-97986226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               153, 119
               

               Conread position:
               355-472
               

               Cow position:
               chr1:8353409-8353525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               92
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               355-530
               

               Cow position:
               chr1:56748841-56749014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               123
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               355-534
               

               Cow position:
               chr1:70483305-70483131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               84, 92
               

               Conread position:
               355-534
               

               Cow position:
               chr1:102501087-102500909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               139
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               86, 28
               

               Conread position:
               356-539
               

               Cow position:
               chr1:64421571-64421745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               143
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               101, 0
               

               Conread position:
               356-541
               

               Cow position:
               chr1:90192446-90192631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               19, 8
               

               Conread position:
               357-519
               

               Cow position:
               chr1:90132191-90132028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               117
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               29, 118
               

               Conread position:
               357-520
               

               Cow position:
               chr1:61134443-61134605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               116, 0
               

               Conread position:
               357-520
               

               Cow position:
               chr1:84815161-84815325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               125
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               80, 118
               

               Conread position:
               357-530
               

               Cow position:
               chr1:22231679-22231851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               114, 0
               

               Conread position:
               357-534
               

               Cow position:
               chr1:5178431-5178604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               116, 0
               

               Conread position:
               357-534
               

               Cow position:
               chr1:52384934-52385116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               137
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               7, 122
               

               Conread position:
               357-535
               

               Cow position:
               chr1:5876435-5876256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               168, 116
               

               Conread position:
               357-539
               

               Cow position:
               chr1:100512928-100513106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               357-540
               

               Cow position:
               chr1:5479629-5479448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               358-504
               

               Cow position:
               chr1:11489127-11488982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               112
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               115, 0
               

               Conread position:
               358-520
               

               Cow position:
               chr1:25955927-25956086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               358-526
               

               Cow position:
               chr1:42404167-42404345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               358-530
               

               Cow position:
               chr1:31801888-31801720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               21, 103
               

               Conread position:
               358-530
               

               Cow position:
               chr1:92187989-92188159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               125
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               101, 0
               

               Conread position:
               358-534
               

               Cow position:
               chr1:87934239-87934076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               358-534
               

               Cow position:
               chr1:102423825-102423999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               130
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               358-538
               

               Cow position:
               chr1:43296687-43296507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               111, 168
               

               Conread position:
               358-539
               

               Cow position:
               chr1:89146842-89146663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               358-540
               

               Cow position:
               chr1:22828538-22828362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               176, 99
               

               Conread position:
               358-543
               

               Cow position:
               chr1:79684404-79684220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               128
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               358-543
               

               Cow position:
               chr1:90879704-90879528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               358-545
               

               Cow position:
               chr1:7965878-7966062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               135
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               111, 0
               

               Conread position:
               359-520
               

               Cow position:
               chr1:33720134-33720294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               126
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               114, 0
               

               Conread position:
               359-541
               

               Cow position:
               chr1:45099793-45099969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               168, 82
               

               Conread position:
               359-548
               

               Cow position:
               chr1:61247397-61247586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               175, 118
               

               Conread position:
               359-564
               

               Cow position:
               chr1:80385454-80385252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               360-534
               

               Cow position:
               chr1:90820443-90820276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               126
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               360-539
               

               Cow position:
               chr1:86503330-86503151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               139
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               90, 119
               

               Conread position:
               361-530
               

               Cow position:
               chr1:3666996-3666833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               112, 0
               

               Conread position:
               362-530
               

               Cow position:
               chr1:41022455-41022616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               134
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               362-534
               

               Cow position:
               chr1:22628614-22628452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               362-541
               

               Cow position:
               chr1:87888421-87888601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               137
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               61, 80
               

               Conread position:
               364-541
               

               Cow position:
               chr1:43379324-43379150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               364-541
               

               Cow position:
               chr1:52509727-52509553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               364-560
               

               Cow position:
               chr1:63212221-63212029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               98, 45
               

               Conread position:
               367-530
               

               Cow position:
               chr1:3130508-3130348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               367-534
               

               Cow position:
               chr1:59551478-59551643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               77, 94
               

               Conread position:
               368-511
               

               Cow position:
               chr1:42796919-42797060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               369-541
               

               Cow position:
               chr1:10523743-10523909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               136
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               370-472
               

               Cow position:
               chr1:30194594-30194696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               103
               

               Alignm identity:
               84
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               370-510
               

               Cow position:
               chr1:96482708-96482852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               45, 64
               

               Conread position:
               370-512
               

               Cow position:
               chr1:76222680-76222537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               109
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               14, 105
               

               Conread position:
               370-530
               

               Cow position:
               chr1:3685638-3685789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               370-530
               

               Cow position:
               chr1:44321554-44321397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               370-530
               

               Cow position:
               chr1:71664853-71664694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               103, 0
               

               Conread position:
               370-534
               

               Cow position:
               chr1:36018739-36018580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               128
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               99, 0
               

               Conread position:
               370-538
               

               Cow position:
               chr1:3271191-3271356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               128
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               72, 9
               

               Conread position:
               372-520
               

               Cow position:
               chr1:100152324-100152474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               114
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               89, 23
               

               Conread position:
               373-530
               

               Cow position:
               chr1:73904071-73904228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               118
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               127, 100
               

               Conread position:
               373-534
               

               Cow position:
               chr1:771733-771585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               123
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               373-534
               

               Cow position:
               chr1:69176705-69176533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               373-540
               

               Cow position:
               chr1:18764574-18764415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               373-543
               

               Cow position:
               chr1:67674556-67674395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               135
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               374-527
               

               Cow position:
               chr1:23050480-23050632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               117
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               76, 36
               

               Conread position:
               374-530
               

               Cow position:
               chr1:69250482-69250632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               122
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               374-543
               

               Cow position:
               chr1:98505405-98505570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               73, 28
               

               Conread position:
               375-519
               

               Cow position:
               chr1:36625564-36625707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               116
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               375-530
               

               Cow position:
               chr1:47190946-47190793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               375-530
               

               Cow position:
               chr1:69442469-69442315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               375-534
               

               Cow position:
               chr1:4180905-4180747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               114
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               375-534
               

               Cow position:
               chr1:6873860-6874019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               117
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               67, 103
               

               Conread position:
               375-534
               

               Cow position:
               chr1:7313639-7313481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               375-534
               

               Cow position:
               chr1:56719389-56719544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               375-537
               

               Cow position:
               chr1:5431111-5431272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               157, 55
               

               Conread position:
               375-540
               

               Cow position:
               chr1:5284183-5284016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               52, 101
               

               Conread position:
               375-542
               

               Cow position:
               chr1:4726745-4726908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               375-543
               

               Cow position:
               chr1:45579596-45579428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               59, 103
               

               Conread position:
               375-548
               

               Cow position:
               chr1:41953953-41953781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               376-530
               

               Cow position:
               chr1:36887277-36887130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               118
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               376-537
               

               Cow position:
               chr1:34767341-34767501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               123
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               82, 13
               

               Conread position:
               376-542
               

               Cow position:
               chr1:42592236-42592072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               120
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               150, 21
               

               Conread position:
               377-534
               

               Cow position:
               chr1:36237832-36237984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               125
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               379-530
               

               Cow position:
               chr1:74305029-74304879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               379-532
               

               Cow position:
               chr1:48695496-48695346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               118
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               379-534
               

               Cow position:
               chr1:55260183-55260030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               379-534
               

               Cow position:
               chr1:62182077-62181935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               379-539
               

               Cow position:
               chr1:17443937-17444097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               119
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               155, 68
               

               Conread position:
               379-539
               

               Cow position:
               chr1:31274937-31274776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               152, 98
               

               Conread position:
               379-541
               

               Cow position:
               chr1:66445015-66445167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               379-544
               

               Cow position:
               chr1:80423679-80423518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               43, 67
               

               Conread position:
               379-548
               

               Cow position:
               chr1:3749528-3749363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               379-548
               

               Cow position:
               chr1:11107297-11107464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               380-534
               

               Cow position:
               chr1:69911157-69911316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               73, 103
               

               Conread position:
               380-548
               

               Cow position:
               chr1:49540734-49540565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               122
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               151, 91
               

               Conread position:
               381-520
               

               Cow position:
               chr1:22394620-22394483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               383-530
               

               Cow position:
               chr1:50853965-50854113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               120
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               61, 92
               

               Conread position:
               383-532
               

               Cow position:
               chr1:73398017-73397869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               383-539
               

               Cow position:
               chr1:57395450-57395295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               149, 64
               

               Conread position:
               383-540
               

               Cow position:
               chr1:3151354-3151511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               116
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               64, 95
               

               Conread position:
               384-530
               

               Cow position:
               chr1:73375044-73374898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               113
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               87, 95
               

               Conread position:
               384-540
               

               Cow position:
               chr1:97594444-97594593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               115
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               384-543
               

               Cow position:
               chr1:20202361-20202513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               127
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               387-530
               

               Cow position:
               chr1:65160189-65160330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               110
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               387-530
               

               Cow position:
               chr1:83222045-83222188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               112
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               62, 88
               

               Conread position:
               387-538
               

               Cow position:
               chr1:31806922-31807066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               121
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               387-539
               

               Cow position:
               chr1:93743900-93744055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               119
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               52, 94
               

               Conread position:
               387-540
               

               Cow position:
               chr1:3535131-3535280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               147, 43
               

               Conread position:
               387-541
               

               Cow position:
               chr1:83246486-83246639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               121
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               387-543
               

               Cow position:
               chr1:89213292-89213137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               117
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               388-534
               

               Cow position:
               chr1:44814608-44814459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               115
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               63, 94
               

               Conread position:
               388-538
               

               Cow position:
               chr1:71321938-71321794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               134, 71
               

               Conread position:
               389-548
               

               Cow position:
               chr1:716524-716365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               141, 62
               

               Conread position:
               390-540
               

               Cow position:
               chr1:64705963-64706112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               120
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               391-533
               

               Cow position:
               chr1:8133988-8134128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               113
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               392-534
               

               Cow position:
               chr1:82115922-82115786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               108
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               394-515
               

               Cow position:
               chr1:7962730-7962849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               95
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               395-533
               

               Cow position:
               chr1:50643001-50642866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               107
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               396-520
               

               Cow position:
               chr1:66693831-66693711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               104
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               396-530
               

               Cow position:
               chr1:43340564-43340433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               102
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               399-512
               

               Cow position:
               chr1:1056137-1056026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               114
               

               Alignm identity:
               91
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               402-520
               

               Cow position:
               chr1:72650489-72650371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               94
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               45, 76
               

               Conread position:
               403-546
               

               Cow position:
               chr1:34952320-34952454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               111
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               404-530
               

               Cow position:
               chr1:77704866-77704741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               101
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               406-548
               

               Cow position:
               chr1:14067364-14067225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               111
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               409-534
               

               Cow position:
               chr1:36306758-36306882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               101
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               410-534
               

               Cow position:
               chr1:20550974-20551097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               96
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               413-523
               

               Cow position:
               chr1:91648764-91648873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               111
               

               Alignm identity:
               90
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               418-548
               

               Cow position:
               chr1:73576767-73576897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               102
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               112, 59
               

               Conread position:
               420-539
               

               Cow position:
               chr1:80312159-80312039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               96
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               11, 59
               
Show alignments to all cow chromosomes.
Conread position:	236-534
Cow position:	chr1:5423827-5423529 (view UCSC Genome Browser custom track)
Alignm length:	307
Alignm identity:	198
Alignm E-value:	8e-21
Alignm gaps (pig, cow):	23, 74
Conread position:	243-518
Cow position:	chr1:2971827-2972108 (view UCSC Genome Browser custom track)
Alignm length:	283
Alignm identity:	201
Alignm E-value:	2e-40
Alignm gaps (pig, cow):	9, 237
Conread position:	243-525
Cow position:	chr1:76658162-76657855 (view UCSC Genome Browser custom track)
Alignm length:	309
Alignm identity:	211
Alignm E-value:	2e-28
Alignm gaps (pig, cow):	22, 256
Conread position:	251-510
Cow position:	chr1:96019161-96019411 (view UCSC Genome Browser custom track)
Alignm length:	260
Alignm identity:	189
Alignm E-value:	2e-40
Alignm gaps (pig, cow):	37, 0
Conread position:	251-534
Cow position:	chr1:57053124-57053408 (view UCSC Genome Browser custom track)
Alignm length:	290
Alignm identity:	196
Alignm E-value:	7e-30
Alignm gaps (pig, cow):	81, 50
Conread position:	254-505
Cow position:	chr1:44946688-44946927 (view UCSC Genome Browser custom track)
Alignm length:	252
Alignm identity:	173
Alignm E-value:	4e-26
Alignm gaps (pig, cow):	42, 0
Conread position:	255-442
Cow position:	chr1:30504433-30504617 (view UCSC Genome Browser custom track)
Alignm length:	188
Alignm identity:	133
Alignm E-value:	4e-25
Alignm gaps (pig, cow):	43, 0
Conread position:	255-460
Cow position:	chr1:42360206-42360422 (view UCSC Genome Browser custom track)
Alignm length:	217
Alignm identity:	159
Alignm E-value:	7e-31
Alignm gaps (pig, cow):	45, 0
Conread position:	255-530
Cow position:	chr1:6589972-6590237 (view UCSC Genome Browser custom track)
Alignm length:	278
Alignm identity:	204
Alignm E-value:	1.99993e-41
Alignm gaps (pig, cow):	199, 35
Conread position:	255-536
Cow position:	chr1:81481454-81481180 (view UCSC Genome Browser custom track)
Alignm length:	283
Alignm identity:	190
Alignm E-value:	7e-30
Alignm gaps (pig, cow):	17, 197
Conread position:	255-539
Cow position:	chr1:60986917-60987199 (view UCSC Genome Browser custom track)
Alignm length:	286
Alignm identity:	208
Alignm E-value:	0
Alignm gaps (pig, cow):	92, 217
Conread position:	257-518
Cow position:	chr1:34159771-34160016 (view UCSC Genome Browser custom track)
Alignm length:	263
Alignm identity:	183
Alignm E-value:	5e-27
Alignm gaps (pig, cow):	134, 22
Conread position:	257-524
Cow position:	chr1:48605964-48606228 (view UCSC Genome Browser custom track)
Alignm length:	268
Alignm identity:	173
Alignm E-value:	1e-24
Alignm gaps (pig, cow):	28, 0
Conread position:	257-534
Cow position:	chr1:3323799-3324078 (view UCSC Genome Browser custom track)
Alignm length:	283
Alignm identity:	213
Alignm E-value:	0
Alignm gaps (pig, cow):	47, 41
Conread position:	257-544
Cow position:	chr1:76613203-76612918 (view UCSC Genome Browser custom track)
Alignm length:	288
Alignm identity:	212
Alignm E-value:	0
Alignm gaps (pig, cow):	50, 0
Conread position:	258-454
Cow position:	chr1:26895043-26894844 (view UCSC Genome Browser custom track)
Alignm length:	201
Alignm identity:	140
Alignm E-value:	1e-23
Alignm gaps (pig, cow):	108, 44
Conread position:	258-505
Cow position:	chr1:54628921-54628677 (view UCSC Genome Browser custom track)
Alignm length:	249
Alignm identity:	176
Alignm E-value:	1e-34
Alignm gaps (pig, cow):	64, 9
Conread position:	259-415
Cow position:	chr1:85596877-85597027 (view UCSC Genome Browser custom track)
Alignm length:	157
Alignm identity:	118
Alignm E-value:	3e-24
Alignm gaps (pig, cow):	87, 0
Conread position:	259-426
Cow position:	chr1:4374403-4374237 (view UCSC Genome Browser custom track)
Alignm length:	168
Alignm identity:	123
Alignm E-value:	1e-26
Alignm gaps (pig, cow):	23, 0
Conread position:	259-427
Cow position:	chr1:95178890-95179055 (view UCSC Genome Browser custom track)
Alignm length:	170
Alignm identity:	121
Alignm E-value:	8e-21
Alignm gaps (pig, cow):	65, 38