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Cow genome map

           
Conread name:
           
Ss1.1-LyN1-MLN01H090075.5
        

               
Conread position:
               
229-530
               

               
Cow position:
               
chr5:33273613-33273918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
26, 46
               

               
Conread position:
               
251-534
               

               
Cow position:
               
chr5:45404988-45405272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
98, 47
               

               
Conread position:
               
252-516
               

               
Cow position:
               
chr5:32935689-32935952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
23, 48
               

               
Conread position:
               
253-529
               

               
Cow position:
               
chr5:11769218-11769492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 95
               

               
Conread position:
               
254-512
               

               
Cow position:
               
chr5:48829107-48829358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
254-530
               

               
Cow position:
               
chr5:41935703-41935434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
36, 54
               

               
Conread position:
               
255-468
               

               
Cow position:
               
chr5:55061876-55062088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
191, 0
               

               
Conread position:
               
255-503
               

               
Cow position:
               
chr5:453510-453745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
256-545
               

               
Cow position:
               
chr5:47871090-47870818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 57
               

               
Conread position:
               
257-444
               

               
Cow position:
               
chr5:23678749-23678565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
47, 111
               

               
Conread position:
               
257-484
               

               
Cow position:
               
chr5:57787759-57787983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
126, 33
               

               
Conread position:
               
257-536
               

               
Cow position:
               
chr5:3771801-3772069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 42
               

               
Conread position:
               
257-542
               

               
Cow position:
               
chr5:66581918-66582203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 33
               

               
Conread position:
               
259-418
               

               
Cow position:
               
chr5:57561475-57561635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-422
               

               
Cow position:
               
chr5:31481101-31481264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
259-442
               

               
Cow position:
               
chr5:6528630-6528821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
259-442
               

               
Cow position:
               
chr5:62142629-62142812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
259-447
               

               
Cow position:
               
chr5:38076532-38076342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
259-447
               

               
Cow position:
               
chr5:41294036-41294222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
165, 53
               

               
Conread position:
               
259-447
               

               
Cow position:
               
chr5:47323420-47323603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
259-447
               

               
Cow position:
               
chr5:63427052-63426864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
259-450
               

               
Cow position:
               
chr5:75436932-75436745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
259-451
               

               
Cow position:
               
chr5:34463629-34463435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
54, 154
               

               
Conread position:
               
259-455
               

               
Cow position:
               
chr5:45273545-45273355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
259-458
               

               
Cow position:
               
chr5:21040018-21039831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
259-458
               

               
Cow position:
               
chr5:35126008-35126207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
58, 31
               

               
Conread position:
               
259-458
               

               
Cow position:
               
chr5:53710735-53710537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
259-461
               

               
Cow position:
               
chr5:458446-458641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
259-462
               

               
Cow position:
               
chr5:37190140-37189941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
259-465
               

               
Cow position:
               
chr5:63987494-63987286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
45, 118
               

               
Conread position:
               
259-468
               

               
Cow position:
               
chr5:9090065-9089866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
259-468
               

               
Cow position:
               
chr5:54767954-54767747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
259-469
               

               
Cow position:
               
chr5:14473458-14473240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
259-470
               

               
Cow position:
               
chr5:34528510-34528709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
155, 20
               

               
Conread position:
               
259-472
               

               
Cow position:
               
chr5:19523855-19524066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
259-472
               

               
Cow position:
               
chr5:33654591-33654382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
63, 30
               

               
Conread position:
               
259-476
               

               
Cow position:
               
chr5:58490672-58490903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
259-496
               

               
Cow position:
               
chr5:30805123-30805345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
259-505
               

               
Cow position:
               
chr5:30418929-30419173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
68, 30
               

               
Conread position:
               
259-510
               

               
Cow position:
               
chr5:47704171-47703924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
63, 29
               

               
Conread position:
               
259-511
               

               
Cow position:
               
chr5:19796927-19797184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
63, 134
               

               
Conread position:
               
259-511
               

               
Cow position:
               
chr5:60952610-60952864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
33, 95
               

               
Conread position:
               
259-511
               

               
Cow position:
               
chr5:64137209-64137460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
63, 41
               

               
Conread position:
               
259-512
               

               
Cow position:
               
chr5:6503928-6503673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
63, 40
               

               
Conread position:
               
259-512
               

               
Cow position:
               
chr5:64697740-64697991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
63, 42
               

               
Conread position:
               
259-514
               

               
Cow position:
               
chr5:49501870-49501613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
183, 48
               

               
Conread position:
               
259-517
               

               
Cow position:
               
chr5:64168282-64168029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
63, 35
               

               
Conread position:
               
259-518
               

               
Cow position:
               
chr5:34050071-34050317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
63, 43
               

               
Conread position:
               
259-518
               

               
Cow position:
               
chr5:34109104-34108848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
259-519
               

               
Cow position:
               
chr5:57265950-57265692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-520
               

               
Cow position:
               
chr5:26097250-26097501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
259-520
               

               
Cow position:
               
chr5:29828004-29828259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
89, 38
               

               
Conread position:
               
259-520
               

               
Cow position:
               
chr5:33414454-33414197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
63, 30
               

               
Conread position:
               
259-520
               

               
Cow position:
               
chr5:33833999-33834251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
259-520
               

               
Cow position:
               
chr5:44796776-44796525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
259-520
               

               
Cow position:
               
chr5:57327752-57328008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
73, 31
               

               
Conread position:
               
259-525
               

               
Cow position:
               
chr5:37065048-37065315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
72, 31
               

               
Conread position:
               
259-527
               

               
Cow position:
               
chr5:59395612-59395882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
73, 40
               

               
Conread position:
               
259-528
               

               
Cow position:
               
chr5:12149494-12149768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
38, 174
               

               
Conread position:
               
259-529
               

               
Cow position:
               
chr5:14345140-14344876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
182, 38
               

               
Conread position:
               
259-529
               

               
Cow position:
               
chr5:17999537-17999276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
259-529
               

               
Cow position:
               
chr5:43371240-43370973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
21, 31
               

               
Conread position:
               
259-529
               

               
Cow position:
               
chr5:45409277-45409545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
259-529
               

               
Cow position:
               
chr5:55955862-55956130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
115, 43
               

               
Conread position:
               
259-529
               

               
Cow position:
               
chr5:71845962-71845706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
259-530
               

               
Cow position:
               
chr5:58979-58709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
48, 38
               

               
Conread position:
               
259-530
               

               
Cow position:
               
chr5:11427280-11427015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
57, 26
               

               
Conread position:
               
259-530
               

               
Cow position:
               
chr5:12557337-12557066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
43, 195
               

               
Conread position:
               
259-530
               

               
Cow position:
               
chr5:19752260-19752522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
27, 13
               

               
Conread position:
               
259-530
               

               
Cow position:
               
chr5:20995140-20994868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
38, 221
               

               
Conread position:
               
259-530
               

               
Cow position:
               
chr5:24349063-24349336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
173, 40
               

               
Conread position:
               
259-530
               

               
Cow position:
               
chr5:25366046-25366320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
44, 169
               

               
Conread position:
               
259-530
               

               
Cow position:
               
chr5:35247157-35246886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 19
               

               
Conread position:
               
259-530
               

               
Cow position:
               
chr5:37255383-37255112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
58, 43
               

               
Conread position:
               
259-530
               

               
Cow position:
               
chr5:52001666-52001403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
259-530
               

               
Cow position:
               
chr5:54311290-54311577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
196, 41
               

               
Conread position:
               
259-530
               

               
Cow position:
               
chr5:56136966-56136700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
67, 41
               

               
Conread position:
               
259-530
               

               
Cow position:
               
chr5:63831882-63832137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
72, 39
               

               
Conread position:
               
259-530
               

               
Cow position:
               
chr5:64555484-64555752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
259-531
               

               
Cow position:
               
chr5:20128009-20128276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
259-532
               

               
Cow position:
               
chr5:57994912-57994657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
259-533
               

               
Cow position:
               
chr5:49668433-49668707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
90, 42
               

               
Conread position:
               
259-533
               

               
Cow position:
               
chr5:51053695-51053424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
104, 35
               

               
Conread position:
               
259-533
               

               
Cow position:
               
chr5:56070811-56071081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
41, 200
               

               
Conread position:
               
259-533
               

               
Cow position:
               
chr5:57756076-57755810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 78
               

               
Conread position:
               
259-533
               

               
Cow position:
               
chr5:61455800-61456071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
43, 109
               

               
Conread position:
               
259-534
               

               
Cow position:
               
chr5:19778624-19778341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
75, 62
               

               
Conread position:
               
259-534
               

               
Cow position:
               
chr5:34976888-34976614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
19, 50
               

               
Conread position:
               
259-534
               

               
Cow position:
               
chr5:40152433-40152712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
81, 43
               

               
Conread position:
               
259-534
               

               
Cow position:
               
chr5:50857891-50858161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
105, 39
               

               
Conread position:
               
259-534
               

               
Cow position:
               
chr5:52165223-52164948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
210, 40
               

               
Conread position:
               
259-534
               

               
Cow position:
               
chr5:52667986-52668264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
87, 31
               

               
Conread position:
               
259-534
               

               
Cow position:
               
chr5:53855653-53855944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
54, 40
               

               
Conread position:
               
259-534
               

               
Cow position:
               
chr5:61914525-61914796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
101, 38
               

               
Conread position:
               
259-534
               

               
Cow position:
               
chr5:64140488-64140763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 40
               

               
Conread position:
               
259-534
               

               
Cow position:
               
chr5:66972383-66972655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 43
               

               
Conread position:
               
259-536
               

               
Cow position:
               
chr5:21828821-21829091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
259-536
               

               
Cow position:
               
chr5:39937061-39937344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
40, 98
               

               
Conread position:
               
259-536
               

               
Cow position:
               
chr5:42845642-42845369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
46, 40
               

               
Conread position:
               
259-536
               

               
Cow position:
               
chr5:72903274-72903013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
259-537
               

               
Cow position:
               
chr5:62107536-62107255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
90, 39
               

               
Conread position:
               
259-539
               

               
Cow position:
               
chr5:32975596-32975327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
276, 28
               

               
Conread position:
               
259-540
               

               
Cow position:
               
chr5:16893818-16893547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
43, 54
               

               
Conread position:
               
259-540
               

               
Cow position:
               
chr5:40109446-40109715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
149, 122
               

               
Conread position:
               
259-540
               

               
Cow position:
               
chr5:63647519-63647245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
73, 38
               

               
Conread position:
               
259-541
               

               
Cow position:
               
chr5:7012893-7012617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
259-541
               

               
Cow position:
               
chr5:15479079-15479361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
45, 39
               

               
Conread position:
               
259-541
               

               
Cow position:
               
chr5:36650505-36650787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
106, 39
               

               
Conread position:
               
259-541
               

               
Cow position:
               
chr5:47317016-47316743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
182, 34
               

               
Conread position:
               
259-541
               

               
Cow position:
               
chr5:52831421-52831710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
40, 67
               

               
Conread position:
               
259-543
               

               
Cow position:
               
chr5:1247218-1247497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
42, 55
               

               
Conread position:
               
259-543
               

               
Cow position:
               
chr5:15470887-15471152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
54, 40
               

               
Conread position:
               
259-543
               

               
Cow position:
               
chr5:39333583-39333295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
73, 42
               

               
Conread position:
               
259-543
               

               
Cow position:
               
chr5:55756470-55756179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 40
               

               
Conread position:
               
259-544
               

               
Cow position:
               
chr5:12247791-12247506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
30, 150
               

               
Conread position:
               
259-544
               

               
Cow position:
               
chr5:12901872-12902154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 77
               

               
Conread position:
               
259-544
               

               
Cow position:
               
chr5:17063135-17062849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
46, 72
               

               
Conread position:
               
259-544
               

               
Cow position:
               
chr5:20843445-20843163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
37, 202
               

               
Conread position:
               
259-544
               

               
Cow position:
               
chr5:44673643-44673940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
41, 229
               

               
Conread position:
               
259-545
               

               
Cow position:
               
chr5:14550626-14550346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
259-545
               

               
Cow position:
               
chr5:31475639-31475920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
259-548
               

               
Cow position:
               
chr5:45845739-45845451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
41, 176
               

               
Conread position:
               
259-596
               

               
Cow position:
               
chr5:63240931-63241267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
325, 48
               

               
Conread position:
               
260-455
               

               
Cow position:
               
chr5:50215599-50215415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
260-512
               

               
Cow position:
               
chr5:30178551-30178299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
29, 19
               

               
Conread position:
               
260-512
               

               
Cow position:
               
chr5:38068710-38068467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
62, 29
               

               
Conread position:
               
260-520
               

               
Cow position:
               
chr5:19335828-19335566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
37, 43
               

               
Conread position:
               
260-520
               

               
Cow position:
               
chr5:53946852-53947110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
260-534
               

               
Cow position:
               
chr5:56014685-56014947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
260-539
               

               
Cow position:
               
chr5:32394557-32394832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
205, 12
               

               
Conread position:
               
260-543
               

               
Cow position:
               
chr5:57768025-57767754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
30, 39
               

               
Conread position:
               
260-548
               

               
Cow position:
               
chr5:47756731-47757012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
272, 64
               

               
Conread position:
               
261-457
               

               
Cow position:
               
chr5:41981327-41981519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
261-512
               

               
Cow position:
               
chr5:27179617-27179868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
193, 41
               

               
Conread position:
               
261-530
               

               
Cow position:
               
chr5:52729060-52728790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
202, 39
               

               
Conread position:
               
261-534
               

               
Cow position:
               
chr5:7057443-7057172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 33
               

               
Conread position:
               
261-534
               

               
Cow position:
               
chr5:18574130-18574407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 30
               

               
Conread position:
               
261-534
               

               
Cow position:
               
chr5:49919880-49920150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 37
               

               
Conread position:
               
261-538
               

               
Cow position:
               
chr5:42064160-42064436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 43
               

               
Conread position:
               
262-505
               

               
Cow position:
               
chr5:22091815-22091565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
262-530
               

               
Cow position:
               
chr5:35208222-35208484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
263-540
               

               
Cow position:
               
chr5:45225865-45225587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
35, 124
               

               
Conread position:
               
263-540
               

               
Cow position:
               
chr5:59057791-59057512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
41, 123
               

               
Conread position:
               
264-534
               

               
Cow position:
               
chr5:70678680-70678420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
265-538
               

               
Cow position:
               
chr5:30232864-30233139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
11, 167
               

               
Conread position:
               
265-543
               

               
Cow position:
               
chr5:57074373-57074103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
37, 153
               

               
Conread position:
               
266-426
               

               
Cow position:
               
chr5:32696861-32696703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
266-437
               

               
Cow position:
               
chr5:40237175-40237342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
266-437
               

               
Cow position:
               
chr5:64758809-64758636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
266-442
               

               
Cow position:
               
chr5:58856066-58856238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
266-444
               

               
Cow position:
               
chr5:2851550-2851728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
32, 99
               

               
Conread position:
               
266-461
               

               
Cow position:
               
chr5:54086505-54086693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
266-467
               

               
Cow position:
               
chr5:67212318-67212519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
26, 164
               

               
Conread position:
               
266-468
               

               
Cow position:
               
chr5:59115349-59115539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
266-472
               

               
Cow position:
               
chr5:26094206-26094000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
266-472
               

               
Cow position:
               
chr5:37646584-37646384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
36, 135
               

               
Conread position:
               
266-497
               

               
Cow position:
               
chr5:71494781-71495010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
205, 0
               

               
Conread position:
               
266-511
               

               
Cow position:
               
chr5:55796003-55795768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
100, 21
               

               
Conread position:
               
266-514
               

               
Cow position:
               
chr5:41713259-41713493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
47, 12
               

               
Conread position:
               
266-519
               

               
Cow position:
               
chr5:64523905-64523654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
32, 16
               

               
Conread position:
               
266-520
               

               
Cow position:
               
chr5:18289092-18289329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
266-520
               

               
Cow position:
               
chr5:29353172-29352921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
39, 166
               

               
Conread position:
               
266-520
               

               
Cow position:
               
chr5:41165048-41165293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
36, 24
               

               
Conread position:
               
266-520
               

               
Cow position:
               
chr5:63234864-63234612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
181, 81
               

               
Conread position:
               
266-520
               

               
Cow position:
               
chr5:66551937-66551681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
103, 186
               

               
Conread position:
               
266-529
               

               
Cow position:
               
chr5:20779434-20779178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
260, 18
               

               
Conread position:
               
266-529
               

               
Cow position:
               
chr5:57526956-57526707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
39, 33
               

               
Conread position:
               
266-529
               

               
Cow position:
               
chr5:61784766-61784505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
266-530
               

               
Cow position:
               
chr5:65776420-65776156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
153, 23
               

               
Conread position:
               
266-533
               

               
Cow position:
               
chr5:44848058-44847803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
85, 31
               

               
Conread position:
               
266-534
               

               
Cow position:
               
chr5:6444189-6443918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
105, 32
               

               
Conread position:
               
266-534
               

               
Cow position:
               
chr5:26467585-26467852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
36, 203
               

               
Conread position:
               
266-535
               

               
Cow position:
               
chr5:4280410-4280670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
70, 28
               

               
Conread position:
               
266-535
               

               
Cow position:
               
chr5:20288302-20288032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
141, 41
               

               
Conread position:
               
266-541
               

               
Cow position:
               
chr5:11540085-11539820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
165, 23
               

               
Conread position:
               
266-544
               

               
Cow position:
               
chr5:43402862-43403144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
36, 166
               

               
Conread position:
               
266-548
               

               
Cow position:
               
chr5:7044745-7044464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
272, 191
               

               
Conread position:
               
266-548
               

               
Cow position:
               
chr5:30253703-30253980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
269, 32
               

               
Conread position:
               
267-512
               

               
Cow position:
               
chr5:65883665-65883421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
55, 35
               

               
Conread position:
               
269-441
               

               
Cow position:
               
chr5:27306269-27306439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
269-468
               

               
Cow position:
               
chr5:26477056-26476856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
39, 70
               

               
Conread position:
               
269-532
               

               
Cow position:
               
chr5:270137-269875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
58, 21
               

               
Conread position:
               
270-445
               

               
Cow position:
               
chr5:9369301-9369132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
270-491
               

               
Cow position:
               
chr5:3588992-3589211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
29, 63
               

               
Conread position:
               
270-541
               

               
Cow position:
               
chr5:37983129-37983402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
271-447
               

               
Cow position:
               
chr5:36838924-36839100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
37, 157
               

               
Conread position:
               
271-467
               

               
Cow position:
               
chr5:59873124-59872921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
42, 197
               

               
Conread position:
               
271-468
               

               
Cow position:
               
chr5:16206188-16205993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
116, 63
               

               
Conread position:
               
271-468
               

               
Cow position:
               
chr5:30949950-30949753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
271-468
               

               
Cow position:
               
chr5:43992289-43992486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
42, 28
               

               
Conread position:
               
271-468
               

               
Cow position:
               
chr5:45420167-45419975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
271-468
               

               
Cow position:
               
chr5:55019259-55019453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
271-472
               

               
Cow position:
               
chr5:51935159-51935355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
271-510
               

               
Cow position:
               
chr5:57686774-57686540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
31, 180
               

               
Conread position:
               
271-520
               

               
Cow position:
               
chr5:30845078-30845317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
271-520
               

               
Cow position:
               
chr5:60210177-60209935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
51, 18
               

               
Conread position:
               
271-529
               

               
Cow position:
               
chr5:59627007-59626752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
26, 153
               

               
Conread position:
               
271-530
               

               
Cow position:
               
chr5:26262709-26262464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
271-532
               

               
Cow position:
               
chr5:14904105-14903843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 203
               

               
Conread position:
               
271-534
               

               
Cow position:
               
chr5:11668217-11667959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
271-534
               

               
Cow position:
               
chr5:26549175-26548918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
179, 0
               

               
Conread position:
               
271-534
               

               
Cow position:
               
chr5:30092656-30092403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
60, 26
               

               
Conread position:
               
271-534
               

               
Cow position:
               
chr5:30629192-30628927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
116, 25
               

               
Conread position:
               
271-534
               

               
Cow position:
               
chr5:33560766-33560513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
271-534
               

               
Cow position:
               
chr5:34624924-34625173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
98, 168
               

               
Conread position:
               
271-534
               

               
Cow position:
               
chr5:44028338-44028085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
192, 96
               

               
Conread position:
               
271-539
               

               
Cow position:
               
chr5:50575752-50576000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
260, 23
               

               
Conread position:
               
271-539
               

               
Cow position:
               
chr5:74858539-74858817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
33, 214
               

               
Conread position:
               
271-541
               

               
Cow position:
               
chr5:49474581-49474321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
31, 147
               

               
Conread position:
               
271-543
               

               
Cow position:
               
chr5:54048385-54048116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
127, 28
               

               
Conread position:
               
271-548
               

               
Cow position:
               
chr5:24996256-24995983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
171, 53
               

               
Conread position:
               
271-548
               

               
Cow position:
               
chr5:54875733-54875454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
89, 42
               

               
Conread position:
               
272-444
               

               
Cow position:
               
chr5:39258480-39258643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
272-444
               

               
Cow position:
               
chr5:58446774-58446945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
272-447
               

               
Cow position:
               
chr5:37808702-37808522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
272-453
               

               
Cow position:
               
chr5:7723633-7723812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
58, 28
               

               
Conread position:
               
272-455
               

               
Cow position:
               
chr5:34887231-34887046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
60, 36
               

               
Conread position:
               
272-529
               

               
Cow position:
               
chr5:67932499-67932246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
173, 27
               

               
Conread position:
               
272-530
               

               
Cow position:
               
chr5:2309589-2309337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
272-530
               

               
Cow position:
               
chr5:50101410-50101157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 187
               

               
Conread position:
               
272-534
               

               
Cow position:
               
chr5:57101558-57101301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
32, 90
               

               
Conread position:
               
272-536
               

               
Cow position:
               
chr5:54350395-54350146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
32, 27
               

               
Conread position:
               
272-542
               

               
Cow position:
               
chr5:30247552-30247292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
273-444
               

               
Cow position:
               
chr5:28224423-28224590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
273-464
               

               
Cow position:
               
chr5:38739430-38739245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
54, 25
               

               
Conread position:
               
273-504
               

               
Cow position:
               
chr5:61007034-61007262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
273-512
               

               
Cow position:
               
chr5:61576514-61576750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
48, 12
               

               
Conread position:
               
273-530
               

               
Cow position:
               
chr5:35459327-35459075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
31, 26
               

               
Conread position:
               
273-534
               

               
Cow position:
               
chr5:30406175-30406439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
155, 29
               

               
Conread position:
               
273-534
               

               
Cow position:
               
chr5:31217094-31216828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
33, 24
               

               
Conread position:
               
273-535
               

               
Cow position:
               
chr5:68537699-68537438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
29, 95
               

               
Conread position:
               
275-512
               

               
Cow position:
               
chr5:23912231-23911995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
59, 24
               

               
Conread position:
               
275-514
               

               
Cow position:
               
chr5:65765158-65764922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
166, 19
               

               
Conread position:
               
275-519
               

               
Cow position:
               
chr5:37894963-37895205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
52, 14
               

               
Conread position:
               
275-539
               

               
Cow position:
               
chr5:52108296-52108028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
146, 24
               

               
Conread position:
               
276-530
               

               
Cow position:
               
chr5:35969507-35969761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
173, 18
               

               
Conread position:
               
277-468
               

               
Cow position:
               
chr5:57230367-57230175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
169, 0
               

               
Conread position:
               
277-514
               

               
Cow position:
               
chr5:35123543-35123316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
70, 21
               

               
Conread position:
               
277-520
               

               
Cow position:
               
chr5:46672178-46672425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
147, 21
               

               
Conread position:
               
277-534
               

               
Cow position:
               
chr5:50723021-50723273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
277-543
               

               
Cow position:
               
chr5:62811796-62812061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
74, 13
               

               
Conread position:
               
277-548
               

               
Cow position:
               
chr5:5855834-5856103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
187, 10
               

               
Conread position:
               
278-512
               

               
Cow position:
               
chr5:36624221-36624454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
46, 24
               

               
Conread position:
               
280-520
               

               
Cow position:
               
chr5:17555058-17554824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
89, 136
               

               
Conread position:
               
280-530
               

               
Cow position:
               
chr5:17835186-17834937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
28, 120
               

               
Conread position:
               
280-530
               

               
Cow position:
               
chr5:23208931-23209180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
199, 0
               

               
Conread position:
               
281-529
               

               
Cow position:
               
chr5:49342074-49341815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
174, 0
               

               
Conread position:
               
281-533
               

               
Cow position:
               
chr5:14920955-14920702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
32, 52
               

               
Conread position:
               
282-455
               

               
Cow position:
               
chr5:58555112-58555286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
282-538
               

               
Cow position:
               
chr5:45187142-45186886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
33, 96
               

               
Conread position:
               
282-542
               

               
Cow position:
               
chr5:12761140-12760887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
282-548
               

               
Cow position:
               
chr5:34347751-34347494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
284-459
               

               
Cow position:
               
chr5:38689558-38689386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
284-539
               

               
Cow position:
               
chr5:25597816-25598057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
247, 15
               

               
Conread position:
               
285-516
               

               
Cow position:
               
chr5:60741224-60741452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
285-534
               

               
Cow position:
               
chr5:15364246-15364496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
14, 100
               

               
Conread position:
               
286-437
               

               
Cow position:
               
chr5:43844684-43844532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
27, 86
               

               
Conread position:
               
286-537
               

               
Cow position:
               
chr5:16938040-16937804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
245, 15
               

               
Conread position:
               
286-544
               

               
Cow position:
               
chr5:39447556-39447290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
287-505
               

               
Cow position:
               
chr5:2827358-2827574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
126, 12
               

               
Conread position:
               
287-529
               

               
Cow position:
               
chr5:5760332-5760089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
154, 113
               

               
Conread position:
               
288-523
               

               
Cow position:
               
chr5:59330761-59330525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
20, 161
               

               
Conread position:
               
288-534
               

               
Cow position:
               
chr5:57371779-57372029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
61, 190
               

               
Conread position:
               
289-528
               

               
Cow position:
               
chr5:67679162-67679400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
158, 142
               

               
Conread position:
               
289-532
               

               
Cow position:
               
chr5:44049684-44049923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
32, 61
               

               
Conread position:
               
290-467
               

               
Cow position:
               
chr5:17724234-17724056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
290-510
               

               
Cow position:
               
chr5:56011111-56011330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
32, 185
               

               
Conread position:
               
290-520
               

               
Cow position:
               
chr5:53055576-53055348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
290-534
               

               
Cow position:
               
chr5:36868721-36868963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
9, 18
               

               
Conread position:
               
291-447
               

               
Cow position:
               
chr5:56287517-56287361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
31, 22
               

               
Conread position:
               
292-534
               

               
Cow position:
               
chr5:873024-873267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 111
               

               
Conread position:
               
297-512
               

               
Cow position:
               
chr5:33918716-33918500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
10, 178
               

               
Conread position:
               
297-530
               

               
Cow position:
               
chr5:31469604-31469370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
8, 184
               

               
Conread position:
               
297-530
               

               
Cow position:
               
chr5:40889307-40889074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
16, 177
               

               
Conread position:
               
297-542
               

               
Cow position:
               
chr5:61414336-61414583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
33, 177
               

               
Conread position:
               
298-503
               

               
Cow position:
               
chr5:5751618-5751413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
23, 176
               

               
Conread position:
               
298-534
               

               
Cow position:
               
chr5:65343615-65343854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
75, 178
               

               
Conread position:
               
299-447
               

               
Cow position:
               
chr5:27293892-27293743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
299-513
               

               
Cow position:
               
chr5:35513208-35513425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
167, 183
               

               
Conread position:
               
299-532
               

               
Cow position:
               
chr5:4322396-4322636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
31, 150
               

               
Conread position:
               
299-548
               

               
Cow position:
               
chr5:64176133-64175889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
236, 152
               

               
Conread position:
               
301-498
               

               
Cow position:
               
chr5:65679975-65679784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
301-503
               

               
Cow position:
               
chr5:46681728-46681524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
50, 122
               

               
Conread position:
               
301-512
               

               
Cow position:
               
chr5:34505932-34505721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 173
               

               
Conread position:
               
301-512
               

               
Cow position:
               
chr5:64027024-64026812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
171, 0
               

               
Conread position:
               
301-530
               

               
Cow position:
               
chr5:65760534-65760313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
301-530
               

               
Cow position:
               
chr5:69383250-69383472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
301-542
               

               
Cow position:
               
chr5:74610704-74610465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
231, 74
               

               
Conread position:
               
302-437
               

               
Cow position:
               
chr5:63656473-63656607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
302-447
               

               
Cow position:
               
chr5:29771525-29771669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
302-455
               

               
Cow position:
               
chr5:24946236-24946389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
63, 135
               

               
Conread position:
               
302-506
               

               
Cow position:
               
chr5:68872191-68872392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
302-511
               

               
Cow position:
               
chr5:47226800-47227012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
302-512
               

               
Cow position:
               
chr5:5201896-5202106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
20, 172
               

               
Conread position:
               
302-512
               

               
Cow position:
               
chr5:37713658-37713449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
171, 0
               

               
Conread position:
               
302-512
               

               
Cow position:
               
chr5:44344077-44344286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
20, 92
               

               
Conread position:
               
302-512
               

               
Cow position:
               
chr5:45706031-45706239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
302-512
               

               
Cow position:
               
chr5:51555086-51554882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
20, 67
               

               
Conread position:
               
302-517
               

               
Cow position:
               
chr5:40097592-40097805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
302-518
               

               
Cow position:
               
chr5:16939598-16939383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 0
               

               
Conread position:
               
302-518
               

               
Cow position:
               
chr5:61999562-61999347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
20, 56
               

               
Conread position:
               
302-520
               

               
Cow position:
               
chr5:65552712-65552510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
302-528
               

               
Cow position:
               
chr5:20394329-20394556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 115
               

               
Conread position:
               
302-530
               

               
Cow position:
               
chr5:2423291-2423068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
29, 39
               

               
Conread position:
               
302-530
               

               
Cow position:
               
chr5:55259404-55259629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
28, 131
               

               
Conread position:
               
302-530
               

               
Cow position:
               
chr5:55965898-55965671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 0
               

               
Conread position:
               
302-530
               

               
Cow position:
               
chr5:58737763-58737535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
28, 178
               

               
Conread position:
               
302-530
               

               
Cow position:
               
chr5:73168015-73167793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
302-531
               

               
Cow position:
               
chr5:56860443-56860665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
165, 79
               

               
Conread position:
               
302-534
               

               
Cow position:
               
chr5:25035258-25035029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
34, 53
               

               
Conread position:
               
302-534
               

               
Cow position:
               
chr5:30561928-30562153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
302-534
               

               
Cow position:
               
chr5:56060074-56059839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
100, 174
               

               
Conread position:
               
302-534
               

               
Cow position:
               
chr5:57062533-57062303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
122, 140
               

               
Conread position:
               
302-537
               

               
Cow position:
               
chr5:52852967-52853195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
302-538
               

               
Cow position:
               
chr5:18062323-18062081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
149, 178
               

               
Conread position:
               
302-539
               

               
Cow position:
               
chr5:60515032-60514795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
136, 91
               

               
Conread position:
               
302-541
               

               
Cow position:
               
chr5:61771109-61771356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
47, 178
               

               
Conread position:
               
302-543
               

               
Cow position:
               
chr5:37090650-37090403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
23, 130
               

               
Conread position:
               
302-543
               

               
Cow position:
               
chr5:56549360-56549602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
46, 41
               

               
Conread position:
               
302-543
               

               
Cow position:
               
chr5:59384691-59384452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
119, 34
               

               
Conread position:
               
302-543
               

               
Cow position:
               
chr5:59627095-59627326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
11, 150
               

               
Conread position:
               
302-566
               

               
Cow position:
               
chr5:57279380-57279644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
211, 171
               

               
Conread position:
               
303-468
               

               
Cow position:
               
chr5:55129340-55129505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
303-475
               

               
Cow position:
               
chr5:34884825-34884647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
303-499
               

               
Cow position:
               
chr5:61492090-61492288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
151, 178
               

               
Conread position:
               
303-505
               

               
Cow position:
               
chr5:58519419-58519218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
170, 0
               

               
Conread position:
               
303-514
               

               
Cow position:
               
chr5:57419797-57419591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
303-518
               

               
Cow position:
               
chr5:50482869-50482649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
44, 176
               

               
Conread position:
               
303-520
               

               
Cow position:
               
chr5:25020770-25020545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
151, 108
               

               
Conread position:
               
303-520
               

               
Cow position:
               
chr5:69033223-69033012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
303-534
               

               
Cow position:
               
chr5:47601809-47602033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
303-534
               

               
Cow position:
               
chr5:71015893-71015660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
8, 174
               

               
Conread position:
               
303-540
               

               
Cow position:
               
chr5:30276687-30276919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
201, 148
               

               
Conread position:
               
303-541
               

               
Cow position:
               
chr5:56028543-56028313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
12, 43
               

               
Conread position:
               
303-543
               

               
Cow position:
               
chr5:35229141-35228910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
303-548
               

               
Cow position:
               
chr5:15115900-15116146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 178
               

               
Conread position:
               
303-548
               

               
Cow position:
               
chr5:19278709-19278464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
44, 28
               

               
Conread position:
               
303-548
               

               
Cow position:
               
chr5:70750188-70749947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
304-468
               

               
Cow position:
               
chr5:6033434-6033599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 54
               

               
Conread position:
               
304-510
               

               
Cow position:
               
chr5:63114473-63114267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
30, 176
               

               
Conread position:
               
304-512
               

               
Cow position:
               
chr5:40170427-40170216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
64, 173
               

               
Conread position:
               
304-525
               

               
Cow position:
               
chr5:48867466-48867254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
304-530
               

               
Cow position:
               
chr5:4226345-4226576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
152, 127
               

               
Conread position:
               
304-530
               

               
Cow position:
               
chr5:6520009-6520227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
69, 121
               

               
Conread position:
               
304-530
               

               
Cow position:
               
chr5:39035778-39036003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
146, 121
               

               
Conread position:
               
304-534
               

               
Cow position:
               
chr5:35989755-35989987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
43, 74
               

               
Conread position:
               
304-534
               

               
Cow position:
               
chr5:38165061-38164822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
27, 33
               

               
Conread position:
               
304-534
               

               
Cow position:
               
chr5:43604139-43604364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
304-534
               

               
Cow position:
               
chr5:48867756-48867522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
110, 178
               

               
Conread position:
               
304-542
               

               
Cow position:
               
chr5:2469209-2468979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
230, 99
               

               
Conread position:
               
304-542
               

               
Cow position:
               
chr5:67634519-67634275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
115, 176
               

               
Conread position:
               
305-488
               

               
Cow position:
               
chr5:11289394-11289209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
48, 171
               

               
Conread position:
               
305-512
               

               
Cow position:
               
chr5:69751388-69751182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
17, 71
               

               
Conread position:
               
305-518
               

               
Cow position:
               
chr5:35397503-35397713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
17, 105
               

               
Conread position:
               
305-530
               

               
Cow position:
               
chr5:56613565-56613342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
122, 155
               

               
Conread position:
               
305-534
               

               
Cow position:
               
chr5:29970704-29970938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
44, 180
               

               
Conread position:
               
305-548
               

               
Cow position:
               
chr5:67672222-67672469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
129, 23
               

               
Conread position:
               
306-520
               

               
Cow position:
               
chr5:52137935-52138149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
42, 54
               

               
Conread position:
               
306-520
               

               
Cow position:
               
chr5:72045674-72045466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
135, 60
               

               
Conread position:
               
306-526
               

               
Cow position:
               
chr5:44163369-44163156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
53, 157
               

               
Conread position:
               
306-530
               

               
Cow position:
               
chr5:5257289-5257066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
7, 147
               

               
Conread position:
               
306-530
               

               
Cow position:
               
chr5:61049332-61049555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
306-540
               

               
Cow position:
               
chr5:53935547-53935323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
307-512
               

               
Cow position:
               
chr5:1104878-1104674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
166, 0
               

               
Conread position:
               
307-520
               

               
Cow position:
               
chr5:7409953-7410157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
136, 93
               

               
Conread position:
               
307-520
               

               
Cow position:
               
chr5:52723578-52723786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
307-530
               

               
Cow position:
               
chr5:60422969-60422749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
166, 0
               

               
Conread position:
               
307-543
               

               
Cow position:
               
chr5:44810238-44810003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 0
               

               
Conread position:
               
308-512
               

               
Cow position:
               
chr5:28814945-28814743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
308-519
               

               
Cow position:
               
chr5:56072159-56071941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
308-529
               

               
Cow position:
               
chr5:60175481-60175706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
162, 30
               

               
Conread position:
               
308-532
               

               
Cow position:
               
chr5:12299913-12300134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
134, 130
               

               
Conread position:
               
308-533
               

               
Cow position:
               
chr5:11562721-11562504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
55, 150
               

               
Conread position:
               
308-536
               

               
Cow position:
               
chr5:12873753-12873979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
183, 131
               

               
Conread position:
               
309-516
               

               
Cow position:
               
chr5:57393302-57393095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
18, 111
               

               
Conread position:
               
309-530
               

               
Cow position:
               
chr5:64798876-64798660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
8, 161
               

               
Conread position:
               
309-534
               

               
Cow position:
               
chr5:5016432-5016648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
206, 38
               

               
Conread position:
               
311-520
               

               
Cow position:
               
chr5:26497672-26497477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
312-530
               

               
Cow position:
               
chr5:43858413-43858197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
312-532
               

               
Cow position:
               
chr5:52137048-52136829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
161, 0
               

               
Conread position:
               
313-444
               

               
Cow position:
               
chr5:26723455-26723585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
313-520
               

               
Cow position:
               
chr5:56361803-56362022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
137, 54
               

               
Conread position:
               
313-521
               

               
Cow position:
               
chr5:60948140-60948344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
313-542
               

               
Cow position:
               
chr5:17828472-17828244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 0
               

               
Conread position:
               
314-518
               

               
Cow position:
               
chr5:51920295-51920499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
8, 160
               

               
Conread position:
               
314-534
               

               
Cow position:
               
chr5:29144182-29143959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
113, 52
               

               
Conread position:
               
314-534
               

               
Cow position:
               
chr5:63187875-63187651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
35, 90
               

               
Conread position:
               
314-539
               

               
Cow position:
               
chr5:61132903-61132668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
315-518
               

               
Cow position:
               
chr5:44196920-44196721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
315-534
               

               
Cow position:
               
chr5:29681107-29681319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
315-544
               

               
Cow position:
               
chr5:2240980-2240754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
316-520
               

               
Cow position:
               
chr5:3743332-3743537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
151, 115
               

               
Conread position:
               
319-512
               

               
Cow position:
               
chr5:4506952-4506760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
319-519
               

               
Cow position:
               
chr5:52778546-52778354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
12, 60
               

               
Conread position:
               
319-520
               

               
Cow position:
               
chr5:22565632-22565830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
319-520
               

               
Cow position:
               
chr5:26894709-26894502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
319-520
               

               
Cow position:
               
chr5:36143000-36143189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
319-530
               

               
Cow position:
               
chr5:28681504-28681295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
128, 109
               

               
Conread position:
               
319-530
               

               
Cow position:
               
chr5:60212597-60212808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
44, 155
               

               
Conread position:
               
319-534
               

               
Cow position:
               
chr5:64060459-64060671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
319-538
               

               
Cow position:
               
chr5:4120038-4120259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
177, 154
               

               
Conread position:
               
319-541
               

               
Cow position:
               
chr5:17104866-17105077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
88, 48
               

               
Conread position:
               
320-511
               

               
Cow position:
               
chr5:51539137-51539327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
320-530
               

               
Cow position:
               
chr5:41226991-41226783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
32, 21
               

               
Conread position:
               
321-519
               

               
Cow position:
               
chr5:52040308-52040111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
321-530
               

               
Cow position:
               
chr5:7177166-7177373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
321-541
               

               
Cow position:
               
chr5:6544121-6543902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
322-541
               

               
Cow position:
               
chr5:66659525-66659746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
116, 154
               

               
Conread position:
               
324-520
               

               
Cow position:
               
chr5:39146965-39146770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
324-534
               

               
Cow position:
               
chr5:54312619-54312824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
324-548
               

               
Cow position:
               
chr5:49407375-49407152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
210, 107
               

               
Conread position:
               
325-520
               

               
Cow position:
               
chr5:53980735-53980541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
325-520
               

               
Cow position:
               
chr5:72167482-72167287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
114, 149
               

               
Conread position:
               
326-520
               

               
Cow position:
               
chr5:41884942-41885125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
326-530
               

               
Cow position:
               
chr5:44722492-44722292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
328-534
               

               
Cow position:
               
chr5:46063519-46063720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
203, 145
               

               
Conread position:
               
329-510
               

               
Cow position:
               
chr5:42288682-42288862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
329-515
               

               
Cow position:
               
chr5:16939386-16939200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
31, 110
               

               
Conread position:
               
329-530
               

               
Cow position:
               
chr5:14293622-14293422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
330-512
               

               
Cow position:
               
chr5:38820636-38820456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
330-530
               

               
Cow position:
               
chr5:31269018-31269226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
97, 157
               

               
Conread position:
               
331-530
               

               
Cow position:
               
chr5:16185403-16185601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
332-519
               

               
Cow position:
               
chr5:20882598-20882404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
124, 184
               

               
Conread position:
               
332-530
               

               
Cow position:
               
chr5:3677749-3677949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
111, 29
               

               
Conread position:
               
332-530
               

               
Cow position:
               
chr5:30796946-30796751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
333-520
               

               
Cow position:
               
chr5:20812573-20812760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
114, 67
               

               
Conread position:
               
333-523
               

               
Cow position:
               
chr5:30035094-30035283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
333-529
               

               
Cow position:
               
chr5:65080463-65080657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
115, 45
               

               
Conread position:
               
333-530
               

               
Cow position:
               
chr5:68604880-68605084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
52, 32
               

               
Conread position:
               
333-533
               

               
Cow position:
               
chr5:52905469-52905273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
333-536
               

               
Cow position:
               
chr5:13270990-13270786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
103, 42
               

               
Conread position:
               
333-542
               

               
Cow position:
               
chr5:61580309-61580513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
94, 24
               

               
Conread position:
               
334-520
               

               
Cow position:
               
chr5:64843943-64843754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
115, 143
               

               
Conread position:
               
336-520
               

               
Cow position:
               
chr5:54753222-54753038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
38, 138
               

               
Conread position:
               
336-528
               

               
Cow position:
               
chr5:62341058-62341249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
73, 138
               

               
Conread position:
               
336-529
               

               
Cow position:
               
chr5:38770583-38770393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
336-530
               

               
Cow position:
               
chr5:29256677-29256487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
336-530
               

               
Cow position:
               
chr5:50579136-50578943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
92, 113
               

               
Conread position:
               
336-534
               

               
Cow position:
               
chr5:58446154-58445957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
112, 53
               

               
Conread position:
               
336-539
               

               
Cow position:
               
chr5:19079282-19079475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
186, 71
               

               
Conread position:
               
336-543
               

               
Cow position:
               
chr5:47220518-47220726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
88, 139
               

               
Conread position:
               
337-520
               

               
Cow position:
               
chr5:38040533-38040357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
337-524
               

               
Cow position:
               
chr5:4347673-4347478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
337-529
               

               
Cow position:
               
chr5:62011714-62011902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
337-530
               

               
Cow position:
               
chr5:44734694-44734506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
337-541
               

               
Cow position:
               
chr5:16668728-16668923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
337-542
               

               
Cow position:
               
chr5:57399221-57399018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
337-543
               

               
Cow position:
               
chr5:63173012-63172814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
338-518
               

               
Cow position:
               
chr5:62572564-62572740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
338-519
               

               
Cow position:
               
chr5:44798836-44799016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
338-530
               

               
Cow position:
               
chr5:43332687-43332502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
338-530
               

               
Cow position:
               
chr5:48154433-48154242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
338-530
               

               
Cow position:
               
chr5:58756374-58756183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
339-449
               

               
Cow position:
               
chr5:35725866-35725755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
339-512
               

               
Cow position:
               
chr5:37933747-37933918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
339-520
               

               
Cow position:
               
chr5:51233986-51233813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
339-522
               

               
Cow position:
               
chr5:69427418-69427248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
342-514
               

               
Cow position:
               
chr5:54980274-54980443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
342-517
               

               
Cow position:
               
chr5:64024432-64024612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
342-519
               

               
Cow position:
               
chr5:54750843-54751018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
342-528
               

               
Cow position:
               
chr5:63124405-63124598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
85, 139
               

               
Conread position:
               
342-529
               

               
Cow position:
               
chr5:20126939-20127127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
39, 110
               

               
Conread position:
               
342-530
               

               
Cow position:
               
chr5:41755949-41755769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
342-530
               

               
Cow position:
               
chr5:44901545-44901741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
103, 139
               

               
Conread position:
               
342-530
               

               
Cow position:
               
chr5:49821464-49821652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
110, 137
               

               
Conread position:
               
342-530
               

               
Cow position:
               
chr5:70189108-70189299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
20, 115
               

               
Conread position:
               
342-532
               

               
Cow position:
               
chr5:64492310-64492499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
342-532
               

               
Cow position:
               
chr5:73424645-73424454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
100, 117
               

               
Conread position:
               
342-534
               

               
Cow position:
               
chr5:1005832-1005641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
342-534
               

               
Cow position:
               
chr5:7676119-7675933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
342-534
               

               
Cow position:
               
chr5:40122574-40122383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
342-539
               

               
Cow position:
               
chr5:742765-742958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
19, 105
               

               
Conread position:
               
342-541
               

               
Cow position:
               
chr5:29054564-29054763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
189, 89
               

               
Conread position:
               
342-541
               

               
Cow position:
               
chr5:71445426-71445625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
190, 131
               

               
Conread position:
               
342-543
               

               
Cow position:
               
chr5:12562724-12562526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
44, 85
               

               
Conread position:
               
343-520
               

               
Cow position:
               
chr5:61201797-61201972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
343-530
               

               
Cow position:
               
chr5:19972967-19972781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
343-537
               

               
Cow position:
               
chr5:27084334-27084527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
343-542
               

               
Cow position:
               
chr5:35190147-35190339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
343-543
               

               
Cow position:
               
chr5:29172024-29172225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
45, 94
               

               
Conread position:
               
344-534
               

               
Cow position:
               
chr5:30221740-30221552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
344-541
               

               
Cow position:
               
chr5:54127328-54127519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
345-544
               

               
Cow position:
               
chr5:44396138-44396337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
184, 135
               

               
Conread position:
               
347-534
               

               
Cow position:
               
chr5:17371657-17371470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
111, 131
               

               
Conread position:
               
349-497
               

               
Cow position:
               
chr5:30497540-30497685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
349-508
               

               
Cow position:
               
chr5:1027426-1027275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
349-512
               

               
Cow position:
               
chr5:54330923-54331090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
114, 76
               

               
Conread position:
               
349-520
               

               
Cow position:
               
chr5:28881649-28881471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
92, 132
               

               
Conread position:
               
349-530
               

               
Cow position:
               
chr5:24915484-24915304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
349-530
               

               
Cow position:
               
chr5:43839956-43839776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
349-534
               

               
Cow position:
               
chr5:5010054-5009883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
349-534
               

               
Cow position:
               
chr5:5808139-5808322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
349-534
               

               
Cow position:
               
chr5:22102601-22102778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
349-534
               

               
Cow position:
               
chr5:29829846-29829662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
349-534
               

               
Cow position:
               
chr5:57139950-57139768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
116, 82
               

               
Conread position:
               
349-534
               

               
Cow position:
               
chr5:69538583-69538767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
349-536
               

               
Cow position:
               
chr5:38683546-38683733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
177, 128
               

               
Conread position:
               
349-539
               

               
Cow position:
               
chr5:19860196-19860012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
349-541
               

               
Cow position:
               
chr5:7139790-7139609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
349-542
               

               
Cow position:
               
chr5:59335813-59336006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
93, 123
               

               
Conread position:
               
349-543
               

               
Cow position:
               
chr5:41736225-41736417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
177, 124
               

               
Conread position:
               
349-543
               

               
Cow position:
               
chr5:43465568-43465761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
349-543
               

               
Cow position:
               
chr5:46710625-46710817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
21, 26
               

               
Conread position:
               
349-543
               

               
Cow position:
               
chr5:46715525-46715717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
21, 26
               

               
Conread position:
               
349-544
               

               
Cow position:
               
chr5:36205733-36205925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
349-544
               

               
Cow position:
               
chr5:37842236-37842044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
115, 98
               

               
Conread position:
               
349-544
               

               
Cow position:
               
chr5:56327678-56327491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
36, 110
               

               
Conread position:
               
349-548
               

               
Cow position:
               
chr5:52207586-52207784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
349-548
               

               
Cow position:
               
chr5:62822713-62822910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
350-518
               

               
Cow position:
               
chr5:54404810-54404652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
350-519
               

               
Cow position:
               
chr5:61726683-61726851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
350-524
               

               
Cow position:
               
chr5:56944067-56944242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
53, 104
               

               
Conread position:
               
350-534
               

               
Cow position:
               
chr5:34918390-34918568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
350-542
               

               
Cow position:
               
chr5:37197820-37198013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
94, 77
               

               
Conread position:
               
350-544
               

               
Cow position:
               
chr5:57087019-57086827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
351-534
               

               
Cow position:
               
chr5:8736234-8736052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
93, 31
               

               
Conread position:
               
351-534
               

               
Cow position:
               
chr5:31527350-31527168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
94, 123
               

               
Conread position:
               
351-534
               

               
Cow position:
               
chr5:46499605-46499787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
351-543
               

               
Cow position:
               
chr5:56525667-56525476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
352-530
               

               
Cow position:
               
chr5:57556075-57556250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
133, 121
               

               
Conread position:
               
352-544
               

               
Cow position:
               
chr5:14454087-14454279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
89, 122
               

               
Conread position:
               
353-534
               

               
Cow position:
               
chr5:12724345-12724166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
19, 62
               

               
Conread position:
               
354-450
               

               
Cow position:
               
chr5:17644580-17644484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
97
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
354-482
               

               
Cow position:
               
chr5:25730533-25730663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
354-520
               

               
Cow position:
               
chr5:6695595-6695760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
91, 62
               

               
Conread position:
               
354-520
               

               
Cow position:
               
chr5:62996005-62996170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
354-520
               

               
Cow position:
               
chr5:65140344-65140511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
25, 83
               

               
Conread position:
               
354-520
               

               
Cow position:
               
chr5:69682301-69682136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
354-525
               

               
Cow position:
               
chr5:48062069-48061894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
100, 74
               

               
Conread position:
               
354-530
               

               
Cow position:
               
chr5:51012047-51012221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
60, 72
               

               
Conread position:
               
354-530
               

               
Cow position:
               
chr5:51800563-51800388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
120, 92
               

               
Conread position:
               
354-530
               

               
Cow position:
               
chr5:55041257-55041432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
354-530
               

               
Cow position:
               
chr5:55162674-55162849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
354-548
               

               
Cow position:
               
chr5:31648468-31648655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
181, 21
               

               
Conread position:
               
354-548
               

               
Cow position:
               
chr5:45854539-45854740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
31, 131
               

               
Conread position:
               
354-568
               

               
Cow position:
               
chr5:22667119-22667329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
355-497
               

               
Cow position:
               
chr5:46749776-46749637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
355-548
               

               
Cow position:
               
chr5:34288201-34288015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
85, 12
               

               
Conread position:
               
357-527
               

               
Cow position:
               
chr5:19052741-19052573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
357-533
               

               
Cow position:
               
chr5:72163165-72162986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
73, 120
               

               
Conread position:
               
357-534
               

               
Cow position:
               
chr5:2355571-2355743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
39, 70
               

               
Conread position:
               
357-534
               

               
Cow position:
               
chr5:19972756-19972582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
357-534
               

               
Cow position:
               
chr5:30492743-30492566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
90, 117
               

               
Conread position:
               
357-534
               

               
Cow position:
               
chr5:63068672-63068496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
357-540
               

               
Cow position:
               
chr5:36634757-36634940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
175, 111
               

               
Conread position:
               
357-541
               

               
Cow position:
               
chr5:60207759-60207938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
177, 82
               

               
Conread position:
               
357-543
               

               
Cow position:
               
chr5:61043237-61043422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
357-548
               

               
Cow position:
               
chr5:44312364-44312171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
175, 122
               

               
Conread position:
               
357-548
               

               
Cow position:
               
chr5:74887849-74887660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
43, 60
               

               
Conread position:
               
358-520
               

               
Cow position:
               
chr5:65745713-65745557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
358-526
               

               
Cow position:
               
chr5:58401621-58401782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
358-534
               

               
Cow position:
               
chr5:54340821-54340991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
358-540
               

               
Cow position:
               
chr5:57640927-57641111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
51, 121
               

               
Conread position:
               
358-548
               

               
Cow position:
               
chr5:67950734-67950546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
359-530
               

               
Cow position:
               
chr5:24464800-24464959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
359-540
               

               
Cow position:
               
chr5:70346354-70346538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
30, 26
               

               
Conread position:
               
360-501
               

               
Cow position:
               
chr5:23855615-23855481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
360-530
               

               
Cow position:
               
chr5:41530886-41530715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
107, 115
               

               
Conread position:
               
360-534
               

               
Cow position:
               
chr5:57687529-57687355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
36, 114
               

               
Conread position:
               
360-545
               

               
Cow position:
               
chr5:63940007-63939822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
81, 23
               

               
Conread position:
               
362-541
               

               
Cow position:
               
chr5:21721414-21721242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
164, 95
               

               
Conread position:
               
362-543
               

               
Cow position:
               
chr5:19561392-19561211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
172, 115
               

               
Conread position:
               
364-544
               

               
Cow position:
               
chr5:40292881-40292705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
367-530
               

               
Cow position:
               
chr5:56881404-56881566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
367-538
               

               
Cow position:
               
chr5:48128341-48128170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
5, 84
               

               
Conread position:
               
370-518
               

               
Cow position:
               
chr5:50525589-50525729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
370-520
               

               
Cow position:
               
chr5:53779219-53779366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
370-529
               

               
Cow position:
               
chr5:38079434-38079594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
85, 58
               

               
Conread position:
               
370-530
               

               
Cow position:
               
chr5:26149098-26149256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
370-530
               

               
Cow position:
               
chr5:63763729-63763886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
370-541
               

               
Cow position:
               
chr5:60523796-60523959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
370-548
               

               
Cow position:
               
chr5:17987830-17987653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
164, 30
               

               
Conread position:
               
372-543
               

               
Cow position:
               
chr5:9487019-9486848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
162, 100
               

               
Conread position:
               
372-548
               

               
Cow position:
               
chr5:36370345-36370516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
163, 69
               

               
Conread position:
               
373-526
               

               
Cow position:
               
chr5:75116506-75116353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
96, 73
               

               
Conread position:
               
373-530
               

               
Cow position:
               
chr5:43611765-43611920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
373-534
               

               
Cow position:
               
chr5:43106868-43107022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
373-540
               

               
Cow position:
               
chr5:718217-718380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
373-542
               

               
Cow position:
               
chr5:55949612-55949445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
373-542
               

               
Cow position:
               
chr5:57447599-57447431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
373-544
               

               
Cow position:
               
chr5:35235622-35235452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
374-535
               

               
Cow position:
               
chr5:59662990-59662830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
157, 75
               

               
Conread position:
               
374-541
               

               
Cow position:
               
chr5:55783895-55783729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
375-520
               

               
Cow position:
               
chr5:29261773-29261917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
64, 76
               

               
Conread position:
               
375-530
               

               
Cow position:
               
chr5:24108991-24108837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
375-530
               

               
Cow position:
               
chr5:56643136-56643289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
375-534
               

               
Cow position:
               
chr5:46755201-46755354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
375-534
               

               
Cow position:
               
chr5:56284372-56284532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
120, 98
               

               
Conread position:
               
375-535
               

               
Cow position:
               
chr5:30132795-30132640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
375-539
               

               
Cow position:
               
chr5:47888662-47888499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
72, 55
               

               
Conread position:
               
375-541
               

               
Cow position:
               
chr5:54712996-54712835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
159, 26
               

               
Conread position:
               
375-543
               

               
Cow position:
               
chr5:37941738-37941573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
375-543
               

               
Cow position:
               
chr5:74980376-74980545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
10, 102
               

               
Conread position:
               
376-537
               

               
Cow position:
               
chr5:36850773-36850615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
376-548
               

               
Cow position:
               
chr5:58237380-58237215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
377-534
               

               
Cow position:
               
chr5:53825043-53824888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
377-542
               

               
Cow position:
               
chr5:14457570-14457413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
378-529
               

               
Cow position:
               
chr5:54555118-54554965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
35, 75
               

               
Conread position:
               
378-534
               

               
Cow position:
               
chr5:15770384-15770227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
69, 97
               

               
Conread position:
               
378-534
               

               
Cow position:
               
chr5:55749965-55749811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
378-543
               

               
Cow position:
               
chr5:58232210-58232374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
379-530
               

               
Cow position:
               
chr5:12566470-12566322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
379-534
               

               
Cow position:
               
chr5:25450027-25450169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
379-536
               

               
Cow position:
               
chr5:59958247-59958396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
380-534
               

               
Cow position:
               
chr5:55943642-55943493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
380-563
               

               
Cow position:
               
chr5:58487449-58487626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
382-543
               

               
Cow position:
               
chr5:61593343-61593499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
140, 13
               

               
Conread position:
               
383-530
               

               
Cow position:
               
chr5:56624440-56624293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
59, 91
               

               
Conread position:
               
383-544
               

               
Cow position:
               
chr5:16939831-16939671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
53, 41
               

               
Conread position:
               
387-534
               

               
Cow position:
               
chr5:1178035-1178177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
387-534
               

               
Cow position:
               
chr5:43815736-43815591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
387-534
               

               
Cow position:
               
chr5:56563835-56563973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
389-615
               

               
Cow position:
               
chr5:14419927-14419710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
189, 48
               

               
Conread position:
               
390-530
               

               
Cow position:
               
chr5:44868441-44868576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
392-549
               

               
Cow position:
               
chr5:6962002-6962158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
396-544
               

               
Cow position:
               
chr5:52153019-52152872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
397-541
               

               
Cow position:
               
chr5:25446976-25447119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
43, 31
               

               
Conread position:
               
397-543
               

               
Cow position:
               
chr5:41639505-41639360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
399-530
               

               
Cow position:
               
chr5:52125302-52125173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
402-533
               

               
Cow position:
               
chr5:37572462-37572332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
405-530
               

               
Cow position:
               
chr5:43434905-43434781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
405-538
               

               
Cow position:
               
chr5:50703950-50703818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
405-540
               

               
Cow position:
               
chr5:44582670-44582528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
405-541
               

               
Cow position:
               
chr5:74690153-74690020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
409-542
               

               
Cow position:
               
chr5:62543942-62544070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
412-526
               

               
Cow position:
               
chr5:56428468-56428355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
412-530
               

               
Cow position:
               
chr5:40740223-40740105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
36, 66
               

               
Conread position:
               
413-534
               

               
Cow position:
               
chr5:72867157-72867277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
415-527
               

               
Cow position:
               
chr5:59517149-59517040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
415-548
               

               
Cow position:
               
chr5:32672726-32672594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
416-530
               

               
Cow position:
               
chr5:45337311-45337199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
419-530
               

               
Cow position:
               
chr5:13471221-13471330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
422-530
               

               
Cow position:
               
chr5:56578815-56578922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
51, 0
               
Show alignments to all cow chromosomes.