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Cow genome map

           
Conread name:
           
Ss1.1-LyN1-MLN01H090075.5
        

               
Conread position:
               
120-524
               

               
Cow position:
               
chr6:14153063-14152663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
349, 371
               

               
Conread position:
               
219-465
               

               
Cow position:
               
chr6:59301859-59301617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
79, 108
               

               
Conread position:
               
231-530
               

               
Cow position:
               
chr6:48435773-48436064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
19, 86
               

               
Conread position:
               
244-520
               

               
Cow position:
               
chr6:21587476-21587210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
250-530
               

               
Cow position:
               
chr6:6201386-6201667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
10, 41
               

               
Conread position:
               
251-534
               

               
Cow position:
               
chr6:47540887-47540602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
15, 29
               

               
Conread position:
               
253-538
               

               
Cow position:
               
chr6:42567453-42567738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
19, 38
               

               
Conread position:
               
255-447
               

               
Cow position:
               
chr6:9751088-9750902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
255-530
               

               
Cow position:
               
chr6:21399793-21399520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
67, 44
               

               
Conread position:
               
255-530
               

               
Cow position:
               
chr6:24110245-24110518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 44
               

               
Conread position:
               
255-534
               

               
Cow position:
               
chr6:3329952-3330234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
76, 46
               

               
Conread position:
               
255-534
               

               
Cow position:
               
chr6:15300861-15300602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
255-542
               

               
Cow position:
               
chr6:50504418-50504702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
35, 192
               

               
Conread position:
               
255-544
               

               
Cow position:
               
chr6:52431062-52430771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
76, 43
               

               
Conread position:
               
256-533
               

               
Cow position:
               
chr6:44867574-44867309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
256-548
               

               
Cow position:
               
chr6:44078483-44078768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
270, 41
               

               
Conread position:
               
257-444
               

               
Cow position:
               
chr6:33929583-33929395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
257-468
               

               
Cow position:
               
chr6:19131396-19131604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
257-510
               

               
Cow position:
               
chr6:47833155-47832898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
66, 37
               

               
Conread position:
               
257-551
               

               
Cow position:
               
chr6:43134971-43134686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 41
               

               
Conread position:
               
258-537
               

               
Cow position:
               
chr6:62669836-62670112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 29
               

               
Conread position:
               
258-544
               

               
Cow position:
               
chr6:63093958-63093666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
32, 204
               

               
Conread position:
               
259-431
               

               
Cow position:
               
chr6:63272643-63272473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-436
               

               
Cow position:
               
chr6:4864579-4864403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
259-442
               

               
Cow position:
               
chr6:8788068-8787887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
259-442
               

               
Cow position:
               
chr6:37462987-37463172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
259-444
               

               
Cow position:
               
chr6:11169667-11169854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
46, 39
               

               
Conread position:
               
259-444
               

               
Cow position:
               
chr6:44623576-44623762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
46, 40
               

               
Conread position:
               
259-444
               

               
Cow position:
               
chr6:47339388-47339204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
259-445
               

               
Cow position:
               
chr6:35103364-35103175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
42, 82
               

               
Conread position:
               
259-445
               

               
Cow position:
               
chr6:38218638-38218820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
182, 38
               

               
Conread position:
               
259-447
               

               
Cow position:
               
chr6:68652384-68652195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
184, 0
               

               
Conread position:
               
259-455
               

               
Cow position:
               
chr6:55161435-55161633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
259-458
               

               
Cow position:
               
chr6:56256542-56256339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
73, 31
               

               
Conread position:
               
259-469
               

               
Cow position:
               
chr6:3592368-3592574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
40, 97
               

               
Conread position:
               
259-469
               

               
Cow position:
               
chr6:25407421-25407215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
122, 31
               

               
Conread position:
               
259-480
               

               
Cow position:
               
chr6:54867483-54867702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
41, 188
               

               
Conread position:
               
259-489
               

               
Cow position:
               
chr6:44970244-44970481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
72, 39
               

               
Conread position:
               
259-496
               

               
Cow position:
               
chr6:17334084-17333850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
63, 29
               

               
Conread position:
               
259-497
               

               
Cow position:
               
chr6:2153629-2153395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
259-499
               

               
Cow position:
               
chr6:36189667-36189903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
259-504
               

               
Cow position:
               
chr6:27888319-27888555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-512
               

               
Cow position:
               
chr6:8125294-8125545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-512
               

               
Cow position:
               
chr6:38641463-38641710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
48, 40
               

               
Conread position:
               
259-512
               

               
Cow position:
               
chr6:55205343-55205091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
90, 99
               

               
Conread position:
               
259-513
               

               
Cow position:
               
chr6:7190150-7189912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
259-514
               

               
Cow position:
               
chr6:9718951-9718699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
44, 66
               

               
Conread position:
               
259-517
               

               
Cow position:
               
chr6:67728339-67728599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
38, 217
               

               
Conread position:
               
259-519
               

               
Cow position:
               
chr6:13367252-13367505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
54, 40
               

               
Conread position:
               
259-520
               

               
Cow position:
               
chr6:2584910-2585165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-520
               

               
Cow position:
               
chr6:7119651-7119406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-520
               

               
Cow position:
               
chr6:12912007-12912264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
61, 19
               

               
Conread position:
               
259-520
               

               
Cow position:
               
chr6:12914439-12914696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
61, 19
               

               
Conread position:
               
259-520
               

               
Cow position:
               
chr6:15937882-15937628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
259-520
               

               
Cow position:
               
chr6:37395439-37395179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 196
               

               
Conread position:
               
259-520
               

               
Cow position:
               
chr6:38207522-38207262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
43, 23
               

               
Conread position:
               
259-520
               

               
Cow position:
               
chr6:41733596-41733859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
107, 20
               

               
Conread position:
               
259-520
               

               
Cow position:
               
chr6:51835367-51835622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
48, 40
               

               
Conread position:
               
259-520
               

               
Cow position:
               
chr6:54365361-54365105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
259-520
               

               
Cow position:
               
chr6:60057685-60057414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
165, 40
               

               
Conread position:
               
259-523
               

               
Cow position:
               
chr6:12092024-12091759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
176, 35
               

               
Conread position:
               
259-523
               

               
Cow position:
               
chr6:52412830-52413089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
259-526
               

               
Cow position:
               
chr6:14914272-14914004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
39, 84
               

               
Conread position:
               
259-529
               

               
Cow position:
               
chr6:19446222-19446486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
127, 38
               

               
Conread position:
               
259-530
               

               
Cow position:
               
chr6:1770229-1769960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
178, 31
               

               
Conread position:
               
259-530
               

               
Cow position:
               
chr6:3595760-3596028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
63, 19
               

               
Conread position:
               
259-530
               

               
Cow position:
               
chr6:5095578-5095308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
46, 40
               

               
Conread position:
               
259-530
               

               
Cow position:
               
chr6:5845203-5844934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
259-530
               

               
Cow position:
               
chr6:6195142-6194868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
81, 149
               

               
Conread position:
               
259-530
               

               
Cow position:
               
chr6:10399935-10399674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
206, 39
               

               
Conread position:
               
259-530
               

               
Cow position:
               
chr6:13565053-13565319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
40, 91
               

               
Conread position:
               
259-530
               

               
Cow position:
               
chr6:15242801-15243073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 41
               

               
Conread position:
               
259-530
               

               
Cow position:
               
chr6:16266691-16266963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
63, 31
               

               
Conread position:
               
259-530
               

               
Cow position:
               
chr6:20157300-20157569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
63, 31
               

               
Conread position:
               
259-530
               

               
Cow position:
               
chr6:34196181-34195928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
78, 39
               

               
Conread position:
               
259-530
               

               
Cow position:
               
chr6:37149157-37149416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-530
               

               
Cow position:
               
chr6:60783838-60784105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
63, 31
               

               
Conread position:
               
259-530
               

               
Cow position:
               
chr6:61515222-61514964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
64, 140
               

               
Conread position:
               
259-530
               

               
Cow position:
               
chr6:61884191-61883939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
188, 40
               

               
Conread position:
               
259-530
               

               
Cow position:
               
chr6:64431904-64432167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
110, 195
               

               
Conread position:
               
259-530
               

               
Cow position:
               
chr6:65264569-65264317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
259-533
               

               
Cow position:
               
chr6:5330379-5330651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 0
               

               
Conread position:
               
259-534
               

               
Cow position:
               
chr6:611519-611781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
259-534
               

               
Cow position:
               
chr6:1429610-1429872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
259-534
               

               
Cow position:
               
chr6:8599974-8600243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
191, 30
               

               
Conread position:
               
259-534
               

               
Cow position:
               
chr6:9219242-9219501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
122, 31
               

               
Conread position:
               
259-534
               

               
Cow position:
               
chr6:15447234-15446954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 221
               

               
Conread position:
               
259-534
               

               
Cow position:
               
chr6:17313703-17313976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 19
               

               
Conread position:
               
259-534
               

               
Cow position:
               
chr6:22332423-22332157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
174, 31
               

               
Conread position:
               
259-534
               

               
Cow position:
               
chr6:35726065-35726328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
30, 18
               

               
Conread position:
               
259-534
               

               
Cow position:
               
chr6:46558023-46558292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 23
               

               
Conread position:
               
259-534
               

               
Cow position:
               
chr6:54490766-54490508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
259-534
               

               
Cow position:
               
chr6:57546251-57545991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
41, 27
               

               
Conread position:
               
259-534
               

               
Cow position:
               
chr6:59603242-59602977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
55, 188
               

               
Conread position:
               
259-534
               

               
Cow position:
               
chr6:62371205-62370949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
259-536
               

               
Cow position:
               
chr6:27240037-27239764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
259-537
               

               
Cow position:
               
chr6:28148221-28148505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
39, 45
               

               
Conread position:
               
259-537
               

               
Cow position:
               
chr6:40050038-40050316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
73, 43
               

               
Conread position:
               
259-537
               

               
Cow position:
               
chr6:47958781-47959046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
51, 40
               

               
Conread position:
               
259-537
               

               
Cow position:
               
chr6:68127716-68127980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
259-538
               

               
Cow position:
               
chr6:62437383-62437659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
259-539
               

               
Cow position:
               
chr6:6264610-6264893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
41, 208
               

               
Conread position:
               
259-539
               

               
Cow position:
               
chr6:19755107-19754839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
259-539
               

               
Cow position:
               
chr6:24781585-24781308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
193, 38
               

               
Conread position:
               
259-539
               

               
Cow position:
               
chr6:45388299-45388565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
78, 42
               

               
Conread position:
               
259-540
               

               
Cow position:
               
chr6:445290-445571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
38, 44
               

               
Conread position:
               
259-540
               

               
Cow position:
               
chr6:3952487-3952765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
259-541
               

               
Cow position:
               
chr6:4692010-4691721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 152
               

               
Conread position:
               
259-541
               

               
Cow position:
               
chr6:18608846-18608565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
62, 30
               

               
Conread position:
               
259-541
               

               
Cow position:
               
chr6:35539538-35539251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
31, 20
               

               
Conread position:
               
259-542
               

               
Cow position:
               
chr6:4559335-4559057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
209, 31
               

               
Conread position:
               
259-542
               

               
Cow position:
               
chr6:28973066-28972786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
188, 54
               

               
Conread position:
               
259-542
               

               
Cow position:
               
chr6:38609938-38610220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
169, 31
               

               
Conread position:
               
259-542
               

               
Cow position:
               
chr6:60118119-60118385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
259-543
               

               
Cow position:
               
chr6:581775-581493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
154, 31
               

               
Conread position:
               
259-543
               

               
Cow position:
               
chr6:44566386-44566673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
33, 92
               

               
Conread position:
               
259-544
               

               
Cow position:
               
chr6:14949510-14949243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
181, 16
               

               
Conread position:
               
259-545
               

               
Cow position:
               
chr6:12669072-12669347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 31
               

               
Conread position:
               
259-548
               

               
Cow position:
               
chr6:7627931-7628221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
73, 39
               

               
Conread position:
               
259-548
               

               
Cow position:
               
chr6:11246732-11247022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
40, 96
               

               
Conread position:
               
259-548
               

               
Cow position:
               
chr6:17794792-17794502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
211, 36
               

               
Conread position:
               
259-548
               

               
Cow position:
               
chr6:23025144-23024846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
44, 224
               

               
Conread position:
               
259-548
               

               
Cow position:
               
chr6:32126031-32126307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
267, 39
               

               
Conread position:
               
259-548
               

               
Cow position:
               
chr6:46865620-46865333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
181, 31
               

               
Conread position:
               
259-548
               

               
Cow position:
               
chr6:52478445-52478159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
54, 80
               

               
Conread position:
               
260-450
               

               
Cow position:
               
chr6:60442389-60442565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
260-506
               

               
Cow position:
               
chr6:22525302-22525536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
260-512
               

               
Cow position:
               
chr6:47778843-47779094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
62, 30
               

               
Conread position:
               
260-534
               

               
Cow position:
               
chr6:6063320-6063054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
260-534
               

               
Cow position:
               
chr6:53145713-53145442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
260-539
               

               
Cow position:
               
chr6:56986675-56986405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
260-544
               

               
Cow position:
               
chr6:22850280-22850004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
187, 38
               

               
Conread position:
               
261-533
               

               
Cow position:
               
chr6:41015006-41014737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
198, 29
               

               
Conread position:
               
261-534
               

               
Cow position:
               
chr6:60144228-60143961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
44, 29
               

               
Conread position:
               
261-539
               

               
Cow position:
               
chr6:17557353-17557618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
66, 29
               

               
Conread position:
               
262-503
               

               
Cow position:
               
chr6:51530213-51529978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
84, 33
               

               
Conread position:
               
262-539
               

               
Cow position:
               
chr6:57089168-57089447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 189
               

               
Conread position:
               
262-542
               

               
Cow position:
               
chr6:19695782-19696053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
263-499
               

               
Cow position:
               
chr6:21514637-21514403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
50, 27
               

               
Conread position:
               
263-505
               

               
Cow position:
               
chr6:8562693-8562927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
36, 45
               

               
Conread position:
               
263-512
               

               
Cow position:
               
chr6:62929468-62929714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
263-519
               

               
Cow position:
               
chr6:41375743-41375993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
34, 40
               

               
Conread position:
               
263-530
               

               
Cow position:
               
chr6:10176323-10176065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
263-530
               

               
Cow position:
               
chr6:35181287-35181020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 63
               

               
Conread position:
               
263-532
               

               
Cow position:
               
chr6:6724476-6724745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
59, 113
               

               
Conread position:
               
263-534
               

               
Cow position:
               
chr6:67451400-67451134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
209, 0
               

               
Conread position:
               
265-505
               

               
Cow position:
               
chr6:50984200-50984434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
178, 22
               

               
Conread position:
               
265-530
               

               
Cow position:
               
chr6:20897213-20896953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 7
               

               
Conread position:
               
266-436
               

               
Cow position:
               
chr6:18049048-18048883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
266-438
               

               
Cow position:
               
chr6:51893523-51893354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
266-444
               

               
Cow position:
               
chr6:35435968-35436146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
266-455
               

               
Cow position:
               
chr6:18144167-18144360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
88, 30
               

               
Conread position:
               
266-462
               

               
Cow position:
               
chr6:582296-582103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
266-463
               

               
Cow position:
               
chr6:37199554-37199367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
36, 102
               

               
Conread position:
               
266-468
               

               
Cow position:
               
chr6:6343406-6343607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
115, 13
               

               
Conread position:
               
266-468
               

               
Cow position:
               
chr6:35993560-35993757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
103, 32
               

               
Conread position:
               
266-468
               

               
Cow position:
               
chr6:55535773-55535576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
266-512
               

               
Cow position:
               
chr6:36920999-36920759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
173, 13
               

               
Conread position:
               
266-514
               

               
Cow position:
               
chr6:35990259-35990021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
99, 31
               

               
Conread position:
               
266-518
               

               
Cow position:
               
chr6:60739992-60740232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
266-529
               

               
Cow position:
               
chr6:48010544-48010291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
178, 13
               

               
Conread position:
               
266-530
               

               
Cow position:
               
chr6:16288076-16287833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
266-530
               

               
Cow position:
               
chr6:17997340-17997083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
266-530
               

               
Cow position:
               
chr6:41656068-41655821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
180, 0
               

               
Conread position:
               
266-530
               

               
Cow position:
               
chr6:53932871-53932611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
90, 32
               

               
Conread position:
               
266-530
               

               
Cow position:
               
chr6:56849988-56850251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
31, 176
               

               
Conread position:
               
266-534
               

               
Cow position:
               
chr6:143395-143140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
266-534
               

               
Cow position:
               
chr6:19292773-19293037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
59, 16
               

               
Conread position:
               
266-534
               

               
Cow position:
               
chr6:33509766-33510027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
59, 32
               

               
Conread position:
               
266-534
               

               
Cow position:
               
chr6:38441152-38441418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
193, 36
               

               
Conread position:
               
266-534
               

               
Cow position:
               
chr6:53841527-53841265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
266-534
               

               
Cow position:
               
chr6:54854218-54854488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
81, 32
               

               
Conread position:
               
266-539
               

               
Cow position:
               
chr6:12964828-12965097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 23
               

               
Conread position:
               
266-543
               

               
Cow position:
               
chr6:29239916-29240179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
266-544
               

               
Cow position:
               
chr6:5609470-5609194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
204, 33
               

               
Conread position:
               
266-544
               

               
Cow position:
               
chr6:67950928-67951205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
33, 102
               

               
Conread position:
               
266-549
               

               
Cow position:
               
chr6:60819492-60819768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
201, 24
               

               
Conread position:
               
267-498
               

               
Cow position:
               
chr6:6067718-6067502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
157, 30
               

               
Conread position:
               
267-504
               

               
Cow position:
               
chr6:48468977-48469219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
142, 11
               

               
Conread position:
               
267-534
               

               
Cow position:
               
chr6:21235018-21235285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
94, 40
               

               
Conread position:
               
268-516
               

               
Cow position:
               
chr6:61978408-61978649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
6, 32
               

               
Conread position:
               
268-520
               

               
Cow position:
               
chr6:21293519-21293274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
68, 22
               

               
Conread position:
               
268-532
               

               
Cow position:
               
chr6:50862919-50863183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
54, 8
               

               
Conread position:
               
269-444
               

               
Cow position:
               
chr6:19013047-19013215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
44, 99
               

               
Conread position:
               
270-534
               

               
Cow position:
               
chr6:36809228-36808964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
62, 31
               

               
Conread position:
               
271-447
               

               
Cow position:
               
chr6:42565670-42565842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
271-451
               

               
Cow position:
               
chr6:58709049-58709235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
271-467
               

               
Cow position:
               
chr6:47799273-47799468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
271-468
               

               
Cow position:
               
chr6:16764674-16764470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
75, 27
               

               
Conread position:
               
271-468
               

               
Cow position:
               
chr6:20605935-20606135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
29, 164
               

               
Conread position:
               
271-472
               

               
Cow position:
               
chr6:16191655-16191849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 112
               

               
Conread position:
               
271-494
               

               
Cow position:
               
chr6:55502746-55502971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
170, 31
               

               
Conread position:
               
271-529
               

               
Cow position:
               
chr6:39358367-39358110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
19, 175
               

               
Conread position:
               
271-530
               

               
Cow position:
               
chr6:5302435-5302168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
199, 27
               

               
Conread position:
               
271-530
               

               
Cow position:
               
chr6:16765416-16765164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
176, 28
               

               
Conread position:
               
271-530
               

               
Cow position:
               
chr6:17549000-17548734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
24, 183
               

               
Conread position:
               
271-530
               

               
Cow position:
               
chr6:23353534-23353790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
179, 27
               

               
Conread position:
               
271-530
               

               
Cow position:
               
chr6:23402009-23401761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
271-530
               

               
Cow position:
               
chr6:48803655-48803406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
34, 97
               

               
Conread position:
               
271-530
               

               
Cow position:
               
chr6:58370735-58370981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
35, 108
               

               
Conread position:
               
271-534
               

               
Cow position:
               
chr6:28559507-28559778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
75, 29
               

               
Conread position:
               
271-542
               

               
Cow position:
               
chr6:16700246-16700501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
263, 27
               

               
Conread position:
               
271-543
               

               
Cow position:
               
chr6:19996598-19996862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
272-442
               

               
Cow position:
               
chr6:20196315-20196153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
272-506
               

               
Cow position:
               
chr6:27851725-27851498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
62, 17
               

               
Conread position:
               
272-513
               

               
Cow position:
               
chr6:67617969-67617730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
74, 30
               

               
Conread position:
               
272-520
               

               
Cow position:
               
chr6:32121887-32122119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
272-520
               

               
Cow position:
               
chr6:46274147-46273910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
21, 37
               

               
Conread position:
               
272-520
               

               
Cow position:
               
chr6:47355801-47356050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
20, 125
               

               
Conread position:
               
272-530
               

               
Cow position:
               
chr6:40032171-40032413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
272-530
               

               
Cow position:
               
chr6:55546195-55545938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
50, 22
               

               
Conread position:
               
272-534
               

               
Cow position:
               
chr6:62683348-62683613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
32, 162
               

               
Conread position:
               
272-534
               

               
Cow position:
               
chr6:68376343-68376077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
24, 106
               

               
Conread position:
               
272-537
               

               
Cow position:
               
chr6:35727823-35728090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
67, 208
               

               
Conread position:
               
273-444
               

               
Cow position:
               
chr6:19681545-19681373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
273-512
               

               
Cow position:
               
chr6:48281974-48282211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
174, 17
               

               
Conread position:
               
273-529
               

               
Cow position:
               
chr6:54208154-54207899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
54, 26
               

               
Conread position:
               
273-530
               

               
Cow position:
               
chr6:4468751-4469000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
273-530
               

               
Cow position:
               
chr6:7539559-7539807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
48, 24
               

               
Conread position:
               
273-530
               

               
Cow position:
               
chr6:55417544-55417299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
66, 25
               

               
Conread position:
               
273-530
               

               
Cow position:
               
chr6:64429214-64428960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
273-532
               

               
Cow position:
               
chr6:43345460-43345204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
273-532
               

               
Cow position:
               
chr6:67187665-67187914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
40, 17
               

               
Conread position:
               
273-539
               

               
Cow position:
               
chr6:24339265-24339532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
107, 45
               

               
Conread position:
               
273-543
               

               
Cow position:
               
chr6:50467116-50467386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
49, 21
               

               
Conread position:
               
273-548
               

               
Cow position:
               
chr6:10039705-10039978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
274-441
               

               
Cow position:
               
chr6:13053778-13053946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
81, 27
               

               
Conread position:
               
274-520
               

               
Cow position:
               
chr6:68816150-68816394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
189, 56
               

               
Conread position:
               
274-535
               

               
Cow position:
               
chr6:32043830-32044091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
48, 15
               

               
Conread position:
               
274-536
               

               
Cow position:
               
chr6:7801410-7801159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
26, 39
               

               
Conread position:
               
275-488
               

               
Cow position:
               
chr6:21590690-21590897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
167, 183
               

               
Conread position:
               
275-501
               

               
Cow position:
               
chr6:1103752-1103535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
275-520
               

               
Cow position:
               
chr6:47305323-47305566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 122
               

               
Conread position:
               
275-530
               

               
Cow position:
               
chr6:20219794-20219545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
39, 99
               

               
Conread position:
               
276-468
               

               
Cow position:
               
chr6:60451407-60451600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
21, 177
               

               
Conread position:
               
277-520
               

               
Cow position:
               
chr6:27219165-27219390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
277-520
               

               
Cow position:
               
chr6:32453373-32453613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
167, 21
               

               
Conread position:
               
280-461
               

               
Cow position:
               
chr6:57287672-57287494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
280-520
               

               
Cow position:
               
chr6:60516816-60517062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
67, 26
               

               
Conread position:
               
280-530
               

               
Cow position:
               
chr6:60474120-60474369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
42, 10
               

               
Conread position:
               
280-534
               

               
Cow position:
               
chr6:35319144-35318895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
280-537
               

               
Cow position:
               
chr6:21004660-21004921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
18, 198
               

               
Conread position:
               
280-537
               

               
Cow position:
               
chr6:37827967-37827706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
5, 129
               

               
Conread position:
               
281-505
               

               
Cow position:
               
chr6:38640222-38640443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
170, 0
               

               
Conread position:
               
281-534
               

               
Cow position:
               
chr6:21535029-21535278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
79, 20
               

               
Conread position:
               
281-543
               

               
Cow position:
               
chr6:63065816-63066084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
103, 9
               

               
Conread position:
               
282-447
               

               
Cow position:
               
chr6:67806027-67805860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
283-518
               

               
Cow position:
               
chr6:39093740-39093967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
22, 16
               

               
Conread position:
               
283-520
               

               
Cow position:
               
chr6:48379623-48379387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 0
               

               
Conread position:
               
283-530
               

               
Cow position:
               
chr6:14063317-14063054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
96, 16
               

               
Conread position:
               
284-468
               

               
Cow position:
               
chr6:37783395-37783577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
171, 14
               

               
Conread position:
               
284-520
               

               
Cow position:
               
chr6:51121081-51120842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
65, 14
               

               
Conread position:
               
284-539
               

               
Cow position:
               
chr6:46173268-46173015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
15, 67
               

               
Conread position:
               
286-501
               

               
Cow position:
               
chr6:21467275-21467060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
13, 61
               

               
Conread position:
               
286-530
               

               
Cow position:
               
chr6:1475339-1475571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
160, 0
               

               
Conread position:
               
286-530
               

               
Cow position:
               
chr6:66590077-66590306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
13, 26
               

               
Conread position:
               
286-537
               

               
Cow position:
               
chr6:61824410-61824650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
147, 12
               

               
Conread position:
               
287-512
               

               
Cow position:
               
chr6:27605344-27605122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
138, 15
               

               
Conread position:
               
287-514
               

               
Cow position:
               
chr6:10466088-10466308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
86, 123
               

               
Conread position:
               
287-530
               

               
Cow position:
               
chr6:21475720-21475959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
24, 12
               

               
Conread position:
               
287-533
               

               
Cow position:
               
chr6:47245778-47246019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
135, 12
               

               
Conread position:
               
287-539
               

               
Cow position:
               
chr6:57079417-57079669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 187
               

               
Conread position:
               
288-497
               

               
Cow position:
               
chr6:67281891-67282092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
288-524
               

               
Cow position:
               
chr6:8731400-8731647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
21, 131
               

               
Conread position:
               
288-539
               

               
Cow position:
               
chr6:47642735-47642987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
43, 9
               

               
Conread position:
               
288-543
               

               
Cow position:
               
chr6:55297098-55296845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
290-498
               

               
Cow position:
               
chr6:67323309-67323508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
290-512
               

               
Cow position:
               
chr6:35842656-35842876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
17, 54
               

               
Conread position:
               
290-523
               

               
Cow position:
               
chr6:61681073-61681305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
13, 153
               

               
Conread position:
               
290-539
               

               
Cow position:
               
chr6:46462382-46462137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
221, 11
               

               
Conread position:
               
291-530
               

               
Cow position:
               
chr6:47782859-47783101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
31, 186
               

               
Conread position:
               
296-520
               

               
Cow position:
               
chr6:66433954-66434178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
104, 79
               

               
Conread position:
               
297-530
               

               
Cow position:
               
chr6:16380547-16380782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
9, 178
               

               
Conread position:
               
297-530
               

               
Cow position:
               
chr6:55376174-55375940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
25, 43
               

               
Conread position:
               
297-757
               

               
Cow position:
               
chr6:6227010-6227469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
22, 185
               

               
Conread position:
               
298-510
               

               
Cow position:
               
chr6:60859302-60859084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
9, 182
               

               
Conread position:
               
299-518
               

               
Cow position:
               
chr6:16261790-16262003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
299-532
               

               
Cow position:
               
chr6:55548528-55548298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
21, 164
               

               
Conread position:
               
300-548
               

               
Cow position:
               
chr6:37692759-37693001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
301-444
               

               
Cow position:
               
chr6:54573267-54573411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
301-502
               

               
Cow position:
               
chr6:69153422-69153618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
301-512
               

               
Cow position:
               
chr6:41169527-41169317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
172, 0
               

               
Conread position:
               
301-512
               

               
Cow position:
               
chr6:60121592-60121380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
26, 174
               

               
Conread position:
               
301-530
               

               
Cow position:
               
chr6:17704839-17705068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
21, 173
               

               
Conread position:
               
301-530
               

               
Cow position:
               
chr6:20371302-20371539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
131, 185
               

               
Conread position:
               
301-534
               

               
Cow position:
               
chr6:323296-323064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
172, 0
               

               
Conread position:
               
301-534
               

               
Cow position:
               
chr6:58725379-58725605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
301-544
               

               
Cow position:
               
chr6:30023894-30024125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
301-565
               

               
Cow position:
               
chr6:4383489-4383748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
224, 36
               

               
Conread position:
               
302-482
               

               
Cow position:
               
chr6:58608435-58608253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
302-502
               

               
Cow position:
               
chr6:10488260-10488074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
302-510
               

               
Cow position:
               
chr6:51666328-51666121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
20, 63
               

               
Conread position:
               
302-512
               

               
Cow position:
               
chr6:54036133-54035924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
20, 33
               

               
Conread position:
               
302-519
               

               
Cow position:
               
chr6:23110190-23109968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
47, 173
               

               
Conread position:
               
302-520
               

               
Cow position:
               
chr6:15305581-15305795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
136, 65
               

               
Conread position:
               
302-520
               

               
Cow position:
               
chr6:32268874-32268663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
302-525
               

               
Cow position:
               
chr6:7103231-7103010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
302-527
               

               
Cow position:
               
chr6:51526499-51526722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
302-530
               

               
Cow position:
               
chr6:50269674-50269448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
20, 56
               

               
Conread position:
               
302-530
               

               
Cow position:
               
chr6:59620667-59620890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
302-532
               

               
Cow position:
               
chr6:68643998-68644229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
24, 172
               

               
Conread position:
               
302-533
               

               
Cow position:
               
chr6:54127803-54127584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
302-534
               

               
Cow position:
               
chr6:54831486-54831716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
302-535
               

               
Cow position:
               
chr6:31806920-31806686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 173
               

               
Conread position:
               
302-535
               

               
Cow position:
               
chr6:50810662-50810434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
56, 157
               

               
Conread position:
               
302-537
               

               
Cow position:
               
chr6:55404916-55405156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
30, 176
               

               
Conread position:
               
302-538
               

               
Cow position:
               
chr6:63251913-63251679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
25, 33
               

               
Conread position:
               
302-541
               

               
Cow position:
               
chr6:65702404-65702162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
25, 173
               

               
Conread position:
               
302-542
               

               
Cow position:
               
chr6:10332091-10331850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
229, 171
               

               
Conread position:
               
302-543
               

               
Cow position:
               
chr6:14166697-14166445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
302-544
               

               
Cow position:
               
chr6:51542902-51543150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
45, 102
               

               
Conread position:
               
302-548
               

               
Cow position:
               
chr6:12928156-12928392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
52, 58
               

               
Conread position:
               
303-502
               

               
Cow position:
               
chr6:17816985-17816785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
36, 172
               

               
Conread position:
               
303-512
               

               
Cow position:
               
chr6:48988441-48988650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
144, 171
               

               
Conread position:
               
303-517
               

               
Cow position:
               
chr6:61556838-61557053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
69, 172
               

               
Conread position:
               
303-518
               

               
Cow position:
               
chr6:54846269-54846054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
27, 171
               

               
Conread position:
               
303-519
               

               
Cow position:
               
chr6:33450959-33450754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
303-520
               

               
Cow position:
               
chr6:35171616-35171838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
109, 90
               

               
Conread position:
               
303-530
               

               
Cow position:
               
chr6:4144652-4144876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
303-530
               

               
Cow position:
               
chr6:43787902-43787674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
6, 172
               

               
Conread position:
               
303-534
               

               
Cow position:
               
chr6:63426677-63426900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
303-534
               

               
Cow position:
               
chr6:67456729-67456977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
303-537
               

               
Cow position:
               
chr6:8688836-8688609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
303-543
               

               
Cow position:
               
chr6:21470418-21470185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
161, 0
               

               
Conread position:
               
304-443
               

               
Cow position:
               
chr6:60667425-60667561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
304-461
               

               
Cow position:
               
chr6:23610954-23611106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
304-519
               

               
Cow position:
               
chr6:55610225-55610005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
74, 175
               

               
Conread position:
               
304-529
               

               
Cow position:
               
chr6:65676254-65676477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 128
               

               
Conread position:
               
304-530
               

               
Cow position:
               
chr6:19401856-19402079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
70, 103
               

               
Conread position:
               
304-530
               

               
Cow position:
               
chr6:24536520-24536292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
26, 12
               

               
Conread position:
               
304-534
               

               
Cow position:
               
chr6:48157388-48157153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
28, 105
               

               
Conread position:
               
304-541
               

               
Cow position:
               
chr6:1941820-1941588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
26, 15
               

               
Conread position:
               
304-545
               

               
Cow position:
               
chr6:19225362-19225143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
305-530
               

               
Cow position:
               
chr6:6229714-6229920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
305-530
               

               
Cow position:
               
chr6:14056458-14056234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
17, 170
               

               
Conread position:
               
305-534
               

               
Cow position:
               
chr6:42483428-42483653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
305-534
               

               
Cow position:
               
chr6:50090655-50090883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
168, 0
               

               
Conread position:
               
305-537
               

               
Cow position:
               
chr6:2078802-2078575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
305-542
               

               
Cow position:
               
chr6:22205014-22204776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
226, 168
               

               
Conread position:
               
305-544
               

               
Cow position:
               
chr6:30502111-30501876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
208, 66
               

               
Conread position:
               
306-501
               

               
Cow position:
               
chr6:31865112-31865300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
306-512
               

               
Cow position:
               
chr6:24183547-24183340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
11, 171
               

               
Conread position:
               
306-520
               

               
Cow position:
               
chr6:65535157-65534944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
165, 0
               

               
Conread position:
               
306-539
               

               
Cow position:
               
chr6:59104613-59104847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
73, 154
               

               
Conread position:
               
307-505
               

               
Cow position:
               
chr6:40774317-40774125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
179, 142
               

               
Conread position:
               
307-512
               

               
Cow position:
               
chr6:6227723-6227519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 9
               

               
Conread position:
               
307-512
               

               
Cow position:
               
chr6:52592603-52592398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
30, 165
               

               
Conread position:
               
308-461
               

               
Cow position:
               
chr6:16316329-16316485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
308-517
               

               
Cow position:
               
chr6:28483031-28483238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
71, 139
               

               
Conread position:
               
308-519
               

               
Cow position:
               
chr6:60150696-60150480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
126, 175
               

               
Conread position:
               
308-520
               

               
Cow position:
               
chr6:8161678-8161461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
41, 176
               

               
Conread position:
               
308-524
               

               
Cow position:
               
chr6:66363221-66363004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
9, 167
               

               
Conread position:
               
308-530
               

               
Cow position:
               
chr6:18447501-18447281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
308-534
               

               
Cow position:
               
chr6:53138922-53138700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
75, 39
               

               
Conread position:
               
309-512
               

               
Cow position:
               
chr6:57115092-57115300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
40, 170
               

               
Conread position:
               
309-534
               

               
Cow position:
               
chr6:21715065-21715288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 68
               

               
Conread position:
               
310-505
               

               
Cow position:
               
chr6:6060554-6060362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
133, 142
               

               
Conread position:
               
310-536
               

               
Cow position:
               
chr6:33150274-33150054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
312-514
               

               
Cow position:
               
chr6:66947798-66947605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
312-528
               

               
Cow position:
               
chr6:67462937-67462721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
10, 162
               

               
Conread position:
               
312-529
               

               
Cow position:
               
chr6:62078943-62079151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
312-530
               

               
Cow position:
               
chr6:19045642-19045862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
150, 164
               

               
Conread position:
               
312-548
               

               
Cow position:
               
chr6:28089028-28088795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
313-452
               

               
Cow position:
               
chr6:46841505-46841366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
313-548
               

               
Cow position:
               
chr6:51553161-51553399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
12, 129
               

               
Conread position:
               
314-468
               

               
Cow position:
               
chr6:21066862-21066707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
314-468
               

               
Cow position:
               
chr6:61128935-61128781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
314-529
               

               
Cow position:
               
chr6:8365833-8366047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
159, 0
               

               
Conread position:
               
314-530
               

               
Cow position:
               
chr6:53529548-53529768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
44, 59
               

               
Conread position:
               
314-530
               

               
Cow position:
               
chr6:66259751-66259971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
111, 169
               

               
Conread position:
               
314-539
               

               
Cow position:
               
chr6:50771337-50771118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
314-540
               

               
Cow position:
               
chr6:18080493-18080272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
318-530
               

               
Cow position:
               
chr6:55054062-55054273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
90, 99
               

               
Conread position:
               
319-511
               

               
Cow position:
               
chr6:67538303-67538114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
121, 33
               

               
Conread position:
               
319-512
               

               
Cow position:
               
chr6:28852000-28852192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
156, 0
               

               
Conread position:
               
319-512
               

               
Cow position:
               
chr6:62811577-62811766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
319-519
               

               
Cow position:
               
chr6:41441722-41441523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
319-529
               

               
Cow position:
               
chr6:54848955-54849164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
319-530
               

               
Cow position:
               
chr6:34560977-34560764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
155, 35
               

               
Conread position:
               
319-530
               

               
Cow position:
               
chr6:42728672-42728880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
319-530
               

               
Cow position:
               
chr6:47648209-47648000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
319-530
               

               
Cow position:
               
chr6:58304441-58304646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
319-530
               

               
Cow position:
               
chr6:68628864-68628645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
129, 10
               

               
Conread position:
               
319-532
               

               
Cow position:
               
chr6:1090607-1090819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
160, 0
               

               
Conread position:
               
319-534
               

               
Cow position:
               
chr6:50883651-50883441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
43, 133
               

               
Conread position:
               
323-519
               

               
Cow position:
               
chr6:17172858-17173051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
21, 16
               

               
Conread position:
               
323-534
               

               
Cow position:
               
chr6:36225139-36225348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
324-521
               

               
Cow position:
               
chr6:57295761-57295957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
324-534
               

               
Cow position:
               
chr6:8369456-8369662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
324-542
               

               
Cow position:
               
chr6:69374801-69374587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
208, 82
               

               
Conread position:
               
325-529
               

               
Cow position:
               
chr6:21184190-21183990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
325-530
               

               
Cow position:
               
chr6:22876898-22876694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
325-543
               

               
Cow position:
               
chr6:28562135-28561921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
20, 9
               

               
Conread position:
               
327-515
               

               
Cow position:
               
chr6:27636349-27636536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
328-462
               

               
Cow position:
               
chr6:5461740-5461609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
328-529
               

               
Cow position:
               
chr6:15587559-15587359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
328-542
               

               
Cow position:
               
chr6:34475525-34475312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
111, 136
               

               
Conread position:
               
329-512
               

               
Cow position:
               
chr6:56061697-56061879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
329-519
               

               
Cow position:
               
chr6:67791828-67792021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
329-548
               

               
Cow position:
               
chr6:44706695-44706914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
108, 121
               

               
Conread position:
               
331-507
               

               
Cow position:
               
chr6:24491067-24491245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
52, 127
               

               
Conread position:
               
331-535
               

               
Cow position:
               
chr6:53711441-53711642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
332-534
               

               
Cow position:
               
chr6:34569447-34569654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
129, 98
               

               
Conread position:
               
332-539
               

               
Cow position:
               
chr6:36163785-36163990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
203, 10
               

               
Conread position:
               
332-544
               

               
Cow position:
               
chr6:15058416-15058623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
333-509
               

               
Cow position:
               
chr6:19809976-19810151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
333-523
               

               
Cow position:
               
chr6:54647463-54647272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
91, 139
               

               
Conread position:
               
333-530
               

               
Cow position:
               
chr6:23058252-23058448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
333-530
               

               
Cow position:
               
chr6:62724596-62724792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
333-541
               

               
Cow position:
               
chr6:57072463-57072670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
198, 83
               

               
Conread position:
               
333-543
               

               
Cow position:
               
chr6:59015529-59015332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
173, 34
               

               
Conread position:
               
333-548
               

               
Cow position:
               
chr6:29853024-29852799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
116, 29
               

               
Conread position:
               
334-527
               

               
Cow position:
               
chr6:57232474-57232281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
103, 38
               

               
Conread position:
               
335-520
               

               
Cow position:
               
chr6:47022603-47022783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
335-534
               

               
Cow position:
               
chr6:26408462-26408264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
336-467
               

               
Cow position:
               
chr6:62478826-62478695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
336-524
               

               
Cow position:
               
chr6:60852600-60852405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
109, 47
               

               
Conread position:
               
336-530
               

               
Cow position:
               
chr6:8468709-8468893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
336-534
               

               
Cow position:
               
chr6:20075837-20076035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
56, 142
               

               
Conread position:
               
336-534
               

               
Cow position:
               
chr6:67574432-67574628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
336-537
               

               
Cow position:
               
chr6:15974476-15974284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
336-539
               

               
Cow position:
               
chr6:46206341-46206535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
105, 33
               

               
Conread position:
               
336-542
               

               
Cow position:
               
chr6:13742032-13742233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
336-542
               

               
Cow position:
               
chr6:39414867-39415071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
49, 21
               

               
Conread position:
               
336-543
               

               
Cow position:
               
chr6:67633516-67633313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
336-545
               

               
Cow position:
               
chr6:19563440-19563230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
105, 139
               

               
Conread position:
               
337-455
               

               
Cow position:
               
chr6:5957703-5957588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
337-467
               

               
Cow position:
               
chr6:16738405-16738534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
337-467
               

               
Cow position:
               
chr6:21559179-21559049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
104, 12
               

               
Conread position:
               
337-520
               

               
Cow position:
               
chr6:30983564-30983738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
118, 82
               

               
Conread position:
               
337-534
               

               
Cow position:
               
chr6:53346019-53346204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
337-543
               

               
Cow position:
               
chr6:45921169-45920973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
338-511
               

               
Cow position:
               
chr6:10324845-10324673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
338-530
               

               
Cow position:
               
chr6:11867234-11867043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
338-530
               

               
Cow position:
               
chr6:55044596-55044407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
338-534
               

               
Cow position:
               
chr6:49685864-49686058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
338-542
               

               
Cow position:
               
chr6:8187144-8186941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
342-489
               

               
Cow position:
               
chr6:58076443-58076589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
342-526
               

               
Cow position:
               
chr6:59546112-59546295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
342-530
               

               
Cow position:
               
chr6:48893882-48893695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
342-532
               

               
Cow position:
               
chr6:26005813-26006002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
342-534
               

               
Cow position:
               
chr6:19052666-19052857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
342-534
               

               
Cow position:
               
chr6:24776188-24776376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
342-534
               

               
Cow position:
               
chr6:45160008-45159817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
342-537
               

               
Cow position:
               
chr6:55517925-55518119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
189, 114
               

               
Conread position:
               
342-540
               

               
Cow position:
               
chr6:633203-632999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
342-540
               

               
Cow position:
               
chr6:52025322-52025113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
342-542
               

               
Cow position:
               
chr6:54820881-54821080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
342-544
               

               
Cow position:
               
chr6:6614670-6614873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
18, 78
               

               
Conread position:
               
342-544
               

               
Cow position:
               
chr6:57248565-57248765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
344-513
               

               
Cow position:
               
chr6:19727801-19727969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
38, 26
               

               
Conread position:
               
344-518
               

               
Cow position:
               
chr6:33278422-33278595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
344-519
               

               
Cow position:
               
chr6:48792829-48793003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
344-530
               

               
Cow position:
               
chr6:56022503-56022318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
344-534
               

               
Cow position:
               
chr6:62805694-62805883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
345-520
               

               
Cow position:
               
chr6:63012381-63012554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
345-534
               

               
Cow position:
               
chr6:54679580-54679770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
155, 128
               

               
Conread position:
               
345-542
               

               
Cow position:
               
chr6:56799842-56799645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
43, 107
               

               
Conread position:
               
348-542
               

               
Cow position:
               
chr6:57299814-57300016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
105, 139
               

               
Conread position:
               
349-514
               

               
Cow position:
               
chr6:26638444-26638610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
96, 126
               

               
Conread position:
               
349-519
               

               
Cow position:
               
chr6:14263834-14263666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
32, 55
               

               
Conread position:
               
349-519
               

               
Cow position:
               
chr6:18599195-18599027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
121, 91
               

               
Conread position:
               
349-519
               

               
Cow position:
               
chr6:39356170-39356337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
349-520
               

               
Cow position:
               
chr6:34380758-34380592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
349-530
               

               
Cow position:
               
chr6:224685-224506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
349-530
               

               
Cow position:
               
chr6:21052393-21052212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
96, 125
               

               
Conread position:
               
349-530
               

               
Cow position:
               
chr6:36938924-36939108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
96, 128
               

               
Conread position:
               
349-530
               

               
Cow position:
               
chr6:57167497-57167316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
82, 104
               

               
Conread position:
               
349-530
               

               
Cow position:
               
chr6:58697575-58697395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
349-532
               

               
Cow position:
               
chr6:44540864-44541040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
349-534
               

               
Cow position:
               
chr6:53765834-53765655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
349-534
               

               
Cow position:
               
chr6:68246777-68246593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
349-540
               

               
Cow position:
               
chr6:55014935-55015127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
92, 127
               

               
Conread position:
               
349-541
               

               
Cow position:
               
chr6:46161150-46160960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
154, 129
               

               
Conread position:
               
349-542
               

               
Cow position:
               
chr6:50451899-50452093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
118, 20
               

               
Conread position:
               
349-542
               

               
Cow position:
               
chr6:67544001-67543809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
349-542
               

               
Cow position:
               
chr6:68594042-68594235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
79, 126
               

               
Conread position:
               
349-543
               

               
Cow position:
               
chr6:19345154-19345348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
84, 58
               

               
Conread position:
               
349-543
               

               
Cow position:
               
chr6:33960593-33960401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
349-543
               

               
Cow position:
               
chr6:60186606-60186404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
95, 135
               

               
Conread position:
               
349-548
               

               
Cow position:
               
chr6:45980130-45979931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
152, 128
               

               
Conread position:
               
349-548
               

               
Cow position:
               
chr6:66329646-66329451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
350-530
               

               
Cow position:
               
chr6:44544091-44543913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
350-531
               

               
Cow position:
               
chr6:6996841-6996664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
78, 53
               

               
Conread position:
               
351-530
               

               
Cow position:
               
chr6:60347569-60347391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
26, 20
               

               
Conread position:
               
352-526
               

               
Cow position:
               
chr6:16411670-16411843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
352-534
               

               
Cow position:
               
chr6:1173897-1173709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
96, 128
               

               
Conread position:
               
353-592
               

               
Cow position:
               
chr6:24651920-24651685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
161, 9
               

               
Conread position:
               
354-517
               

               
Cow position:
               
chr6:31520931-31521092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
354-520
               

               
Cow position:
               
chr6:32336092-32336263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
15, 130
               

               
Conread position:
               
354-528
               

               
Cow position:
               
chr6:43906622-43906449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
354-530
               

               
Cow position:
               
chr6:18440416-18440244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
354-530
               

               
Cow position:
               
chr6:57305892-57306061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
21, 103
               

               
Conread position:
               
354-533
               

               
Cow position:
               
chr6:34722043-34721874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
148, 47
               

               
Conread position:
               
354-534
               

               
Cow position:
               
chr6:18776312-18776484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
354-534
               

               
Cow position:
               
chr6:26054843-26054662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
87, 121
               

               
Conread position:
               
354-534
               

               
Cow position:
               
chr6:33302456-33302634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
87, 107
               

               
Conread position:
               
354-534
               

               
Cow position:
               
chr6:53811644-53811825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
103, 120
               

               
Conread position:
               
354-534
               

               
Cow position:
               
chr6:66293546-66293721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
354-534
               

               
Cow position:
               
chr6:68272664-68272841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
354-537
               

               
Cow position:
               
chr6:17404622-17404804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
105, 47
               

               
Conread position:
               
354-538
               

               
Cow position:
               
chr6:54889661-54889845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
99, 121
               

               
Conread position:
               
354-540
               

               
Cow position:
               
chr6:55919873-55919687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
88, 97
               

               
Conread position:
               
354-543
               

               
Cow position:
               
chr6:62987634-62987457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
354-543
               

               
Cow position:
               
chr6:63020404-63020589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
354-544
               

               
Cow position:
               
chr6:21083479-21083293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
55, 73
               

               
Conread position:
               
354-545
               

               
Cow position:
               
chr6:57467658-57467848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
355-536
               

               
Cow position:
               
chr6:32006392-32006215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
179, 102
               

               
Conread position:
               
357-520
               

               
Cow position:
               
chr6:14471427-14471589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
357-530
               

               
Cow position:
               
chr6:68302418-68302246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
357-540
               

               
Cow position:
               
chr6:29266068-29265876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
5, 126
               

               
Conread position:
               
357-544
               

               
Cow position:
               
chr6:55030394-55030582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
44, 122
               

               
Conread position:
               
357-545
               

               
Cow position:
               
chr6:50682233-50682050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
358-505
               

               
Cow position:
               
chr6:30895926-30895781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
358-518
               

               
Cow position:
               
chr6:61644793-61644634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
358-534
               

               
Cow position:
               
chr6:19936504-19936330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
358-539
               

               
Cow position:
               
chr6:34076227-34076406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 99
               

               
Conread position:
               
358-539
               

               
Cow position:
               
chr6:56581993-56581811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
95, 117
               

               
Conread position:
               
358-548
               

               
Cow position:
               
chr6:31847175-31846992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
359-465
               

               
Cow position:
               
chr6:38961741-38961635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
359-520
               

               
Cow position:
               
chr6:14150313-14150157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
359-534
               

               
Cow position:
               
chr6:16627799-16627967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
15, 100
               

               
Conread position:
               
359-537
               

               
Cow position:
               
chr6:24903512-24903334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
5, 115
               

               
Conread position:
               
359-543
               

               
Cow position:
               
chr6:35985070-35984887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
360-505
               

               
Cow position:
               
chr6:62224489-62224633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
82, 114
               

               
Conread position:
               
360-534
               

               
Cow position:
               
chr6:16357504-16357679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
88, 118
               

               
Conread position:
               
361-534
               

               
Cow position:
               
chr6:47150888-47151056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
363-512
               

               
Cow position:
               
chr6:56089716-56089570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
364-530
               

               
Cow position:
               
chr6:10163737-10163908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
364-530
               

               
Cow position:
               
chr6:55060934-55061104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
367-520
               

               
Cow position:
               
chr6:59101247-59101095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
368-534
               

               
Cow position:
               
chr6:7291391-7291549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
370-520
               

               
Cow position:
               
chr6:34463510-34463367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
370-530
               

               
Cow position:
               
chr6:4760069-4760227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
98, 76
               

               
Conread position:
               
370-530
               

               
Cow position:
               
chr6:16502968-16502808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
84, 104
               

               
Conread position:
               
370-530
               

               
Cow position:
               
chr6:54840430-54840266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
373-518
               

               
Cow position:
               
chr6:29851449-29851590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
373-530
               

               
Cow position:
               
chr6:21175418-21175568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
373-530
               

               
Cow position:
               
chr6:45094653-45094812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
73, 103
               

               
Conread position:
               
373-540
               

               
Cow position:
               
chr6:54406719-54406561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
34, 54
               

               
Conread position:
               
373-541
               

               
Cow position:
               
chr6:5445748-5445914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
161, 8
               

               
Conread position:
               
374-543
               

               
Cow position:
               
chr6:4049071-4048903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
374-551
               

               
Cow position:
               
chr6:29496074-29496249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
158, 99
               

               
Conread position:
               
375-520
               

               
Cow position:
               
chr6:47450839-47450695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
375-530
               

               
Cow position:
               
chr6:44474642-44474796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
375-534
               

               
Cow position:
               
chr6:16137688-16137529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
60, 103
               

               
Conread position:
               
375-534
               

               
Cow position:
               
chr6:30123087-30122929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
375-534
               

               
Cow position:
               
chr6:47790717-47790560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
375-534
               

               
Cow position:
               
chr6:59687730-59687572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
375-536
               

               
Cow position:
               
chr6:67290573-67290414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
375-538
               

               
Cow position:
               
chr6:37092277-37092118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
375-541
               

               
Cow position:
               
chr6:45471507-45471341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
127, 94
               

               
Conread position:
               
375-543
               

               
Cow position:
               
chr6:53732064-53732232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
82, 99
               

               
Conread position:
               
376-548
               

               
Cow position:
               
chr6:3936866-3937040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
88, 103
               

               
Conread position:
               
376-548
               

               
Cow position:
               
chr6:8726761-8726927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
377-540
               

               
Cow position:
               
chr6:13097316-13097153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
75, 62
               

               
Conread position:
               
378-530
               

               
Cow position:
               
chr6:31928722-31928873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
378-534
               

               
Cow position:
               
chr6:12099601-12099452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
378-548
               

               
Cow position:
               
chr6:40833929-40833767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
156, 67
               

               
Conread position:
               
380-530
               

               
Cow position:
               
chr6:50445030-50444881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
380-540
               

               
Cow position:
               
chr6:26764740-26764577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
73, 100
               

               
Conread position:
               
380-591
               

               
Cow position:
               
chr6:55945876-55945662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
73, 97
               

               
Conread position:
               
381-539
               

               
Cow position:
               
chr6:35775570-35775728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
66, 97
               

               
Conread position:
               
381-541
               

               
Cow position:
               
chr6:54828234-54828073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
150, 92
               

               
Conread position:
               
381-541
               

               
Cow position:
               
chr6:57935484-57935331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
382-530
               

               
Cow position:
               
chr6:16016123-16016269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
382-541
               

               
Cow position:
               
chr6:67374587-67374432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
383-530
               

               
Cow position:
               
chr6:49825003-49824858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
384-534
               

               
Cow position:
               
chr6:15111750-15111597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
58, 97
               

               
Conread position:
               
387-530
               

               
Cow position:
               
chr6:23381574-23381432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
390-534
               

               
Cow position:
               
chr6:55196310-55196454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
57, 88
               

               
Conread position:
               
391-519
               

               
Cow position:
               
chr6:30688413-30688286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
393-530
               

               
Cow position:
               
chr6:60088376-60088241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
95, 46
               

               
Conread position:
               
395-541
               

               
Cow position:
               
chr6:57143594-57143449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
403-500
               

               
Cow position:
               
chr6:31778821-31778917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
403-534
               

               
Cow position:
               
chr6:65831471-65831601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
414-534
               

               
Cow position:
               
chr6:12711681-12711554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
27, 71
               

               
Conread position:
               
418-543
               

               
Cow position:
               
chr6:16738738-16738862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
422-533
               

               
Cow position:
               
chr6:36267126-36267237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 56
               
Show alignments to all cow chromosomes.