Cow genome map

Conread name: Ss1.1-Lym1-jns55_D05.f.5

Conread position: 33-404
Cow position: chrX:44053389-44053018 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 241
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 33, 131

Conread position: 121-405
Cow position: chrX:38102407-38102685 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 184
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 68, 7

Conread position: 127-396
Cow position: chrX:47967638-47967367 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 186
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 59, 149

Conread position: 127-396
Cow position: chrX:48010635-48010362 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 187
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 68, 33

Conread position: 127-401
Cow position: chrX:47873305-47873578 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 186
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 68, 33

Conread position: 127-404
Cow position: chrX:34543815-34543547 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 203
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 114, 45

Conread position: 127-405
Cow position: chrX:14599568-14599292 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 191
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 69, 60

Conread position: 127-405
Cow position: chrX:48195004-48195282 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 195
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 68, 33

Conread position: 127-405
Cow position: chrX:48652690-48652968 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 190
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 69, 33

Conread position: 128-405
Cow position: chrX:22857072-22856791 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 177
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 68, 0

Conread position: 130-405
Cow position: chrX:8731122-8730838 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 199
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 28, 0

Conread position: 132-402
Cow position: chrX:41166936-41167202 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 195
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 64, 35

Conread position: 133-371
Cow position: chrX:10831465-10831704 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 169
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 63, 36

Conread position: 133-392
Cow position: chrX:17726000-17725750 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 190
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 63, 35

Conread position: 133-392
Cow position: chrX:42247157-42247412 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 188
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 63, 36

Conread position: 133-404
Cow position: chrX:618977-619248 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 196
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 63, 36

Conread position: 133-404
Cow position: chrX:26875856-26876121 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 202
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 61, 36

Conread position: 133-405
Cow position: chrX:13913095-13912838 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 182
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 236, 42

Conread position: 133-405
Cow position: chrX:19015462-19015201 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 196
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 108, 27

Conread position: 134-402
Cow position: chrX:40035417-40035687 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 187
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 60, 38

Conread position: 144-405
Cow position: chrX:3653779-3653522 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 183
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 19, 92

Conread position: 145-404
Cow position: chrX:47210830-47211090 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 174
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 51, 25

Conread position: 150-375
Cow position: chrX:29542204-29542430 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 165
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 28, 108

Conread position: 151-352
Cow position: chrX:42235517-42235722 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 149
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 45, 15

Conread position: 151-372
Cow position: chrX:6234443-6234658 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 164
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 45, 16

Conread position: 151-398
Cow position: chrX:33639985-33639737 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 179
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 42, 78

Conread position: 151-405
Cow position: chrX:45403818-45404075 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 183
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 47, 11

Conread position: 152-405
Cow position: chrX:25238181-25237937 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 182
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 52, 0

Conread position: 154-392
Cow position: chrX:30922194-30921957 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 168
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 39, 16

Conread position: 154-402
Cow position: chrX:7509152-7508901 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 170
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 25, 103

Conread position: 154-405
Cow position: chrX:38227084-38227331 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 179
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 41, 65

Conread position: 155-372
Cow position: chrX:45846107-45845887 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 147
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 155-405
Cow position: chrX:678561-678809 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 181
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 24, 48

Conread position: 155-405
Cow position: chrX:40183331-40183591 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 186
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 20, 0

Conread position: 156-391
Cow position: chrX:11856435-11856202 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 176
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 40, 55

Conread position: 156-401
Cow position: chrX:31250393-31250155 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 170
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 39, 16

Conread position: 156-404
Cow position: chrX:37119601-37119359 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 175
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 38, 87

Conread position: 156-405
Cow position: chrX:8797261-8797007 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 216

Conread position: 156-405
Cow position: chrX:31442824-31443062 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 186
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 85, 41

Conread position: 156-405
Cow position: chrX:34441443-34441691 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 191
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 9, 87

Conread position: 157-365
Cow position: chrX:1499670-1499468 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 150
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 39, 15

Conread position: 157-404
Cow position: chrX:47248780-47249028 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 167
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 39, 123

Conread position: 157-405
Cow position: chrX:17541964-17541723 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 175
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 90, 45

Conread position: 157-405
Cow position: chrX:20339885-20340132 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 177
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 37, 97

Conread position: 161-401
Cow position: chrX:17662591-17662834 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 178
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 19, 11

Conread position: 162-353
Cow position: chrX:36961644-36961446 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 145
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 34, 0

Conread position: 162-367
Cow position: chrX:17908287-17908487 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 152
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 34, 58

Conread position: 162-372
Cow position: chrX:9425742-9425950 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 152
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 32, 10

Conread position: 162-372
Cow position: chrX:38853198-38852988 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 146
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 34, 93

Conread position: 162-384
Cow position: chrX:29601828-29602053 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 173
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 7, 95

Conread position: 162-392
Cow position: chrX:1728427-1728645 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 157
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 42, 0

Conread position: 162-400
Cow position: chrX:46532497-46532745 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 181
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 9, 213

Conread position: 162-402
Cow position: chrX:11082622-11082851 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 171
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 15, 39

Conread position: 162-404
Cow position: chrX:13058572-13058340 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 164
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 81, 29

Conread position: 162-405
Cow position: chrX:39938521-39938758 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 177
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 18, 77

Conread position: 163-400
Cow position: chrX:45502146-45501912 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 166
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 8, 38

Conread position: 163-405
Cow position: chrX:7718854-7718612 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 177
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 33, 91

Conread position: 163-405
Cow position: chrX:8900027-8899783 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 172
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 31, 9

Conread position: 169-371
Cow position: chrX:46315383-46315588 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 143
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 27, 89

Conread position: 169-395
Cow position: chrX:5017420-5017639 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 158
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 27, 120

Conread position: 169-395
Cow position: chrX:37910436-37910222 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 22, 39

Conread position: 169-400
Cow position: chrX:7646247-7646022 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 174
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 27, 48

Conread position: 169-400
Cow position: chrX:30543294-30543518 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 160
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 27, 74

Conread position: 169-402
Cow position: chrX:33466605-33466379 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 170
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 11, 75

Conread position: 169-405
Cow position: chrX:37836584-37836345 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 173
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 19, 116

Conread position: 169-407
Cow position: chrX:6278506-6278749 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 182
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 27, 0

Conread position: 169-418
Cow position: chrX:48236814-48236557 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 177
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 9, 92

Conread position: 172-399
Cow position: chrX:27514860-27514633 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 161
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 69, 28

Conread position: 172-402
Cow position: chrX:17888427-17888644 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 170
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 8, 48

Conread position: 172-403
Cow position: chrX:5638177-5638408 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 180
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 24, 56

Conread position: 172-405
Cow position: chrX:25815916-25816137 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 176
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 9, 39

Conread position: 172-405
Cow position: chrX:32020128-32020363 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 180
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 24, 120

Conread position: 173-401
Cow position: chrX:23563800-23564034 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 179
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 22, 0

Conread position: 173-403
Cow position: chrX:3654599-3654365 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 168
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 11, 84

Conread position: 175-384
Cow position: chrX:36283340-36283125 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 152
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 18, 84

Conread position: 175-401
Cow position: chrX:38439466-38439236 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 174
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 21, 81

Conread position: 175-403
Cow position: chrX:11938945-11939163 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 166
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 74, 25

Conread position: 175-403
Cow position: chrX:28866016-28866231 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 162
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 70, 26

Conread position: 175-404
Cow position: chrX:13647798-13648024 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 164
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 21, 80

Conread position: 175-404
Cow position: chrX:15147199-15147426 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 174
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 21, 116

Conread position: 175-404
Cow position: chrX:35224284-35224062 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 174
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 19, 51

Conread position: 175-405
Cow position: chrX:23497680-23497904 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 178
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 21, 81

Conread position: 175-405
Cow position: chrX:27446684-27446447 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 168
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 21, 114

Conread position: 175-405
Cow position: chrX:30832861-30833079 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 165
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 21, 79

Conread position: 176-370
Cow position: chrX:46587807-46587611 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 142
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 20, 128

Conread position: 176-371
Cow position: chrX:43730235-43730422 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 141
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 65, 25

Conread position: 176-374
Cow position: chrX:26285966-26285770 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 142
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 20, 30

Conread position: 176-380
Cow position: chrX:40567589-40567383 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 145
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 20, 38

Conread position: 176-385
Cow position: chrX:11633667-11633457 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 156
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 20, 67

Conread position: 176-385
Cow position: chrX:23091853-23091660 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 158
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 20, 12

Conread position: 176-386
Cow position: chrX:1503323-1503117 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 148
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 20, 65

Conread position: 176-388
Cow position: chrX:10437681-10437889 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 161
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 64, 37

Conread position: 176-388
Cow position: chrX:11589600-11589816 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 165
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 17, 144

Conread position: 176-390
Cow position: chrX:13382317-13382098 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 156
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 20, 0

Conread position: 176-390
Cow position: chrX:21665607-21665819 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 161
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 18, 113

Conread position: 176-390
Cow position: chrX:44397005-44396789 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 154
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 20, 67

Conread position: 176-391
Cow position: chrX:35681328-35681118 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 168
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 20, 115

Conread position: 176-392
Cow position: chrX:12116033-12115810 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 164
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 20, 120

Conread position: 176-392
Cow position: chrX:37048590-37048809 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 153
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 20, 67

Conread position: 176-392
Cow position: chrX:37489710-37489502 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 160
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 26, 35

Conread position: 176-395
Cow position: chrX:14900742-14900952 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 160
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 127, 26

Conread position: 176-395
Cow position: chrX:45412672-45412886 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 160
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 17, 53

Conread position: 176-396
Cow position: chrX:41199092-41198872 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 159
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 20, 34

Conread position: 176-396
Cow position: chrX:42338959-42339168 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 159
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 25, 0

Conread position: 176-398
Cow position: chrX:38549434-38549214 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 169
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 20, 67

Conread position: 176-398
Cow position: chrX:42461757-42461980 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 169
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 17, 67

Conread position: 176-399
Cow position: chrX:28134333-28134111 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 169
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 20, 68

Conread position: 176-399
Cow position: chrX:47481789-47481565 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 159
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 19, 116

Conread position: 176-400
Cow position: chrX:20752242-20752027 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 165
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 20, 44

Conread position: 176-400
Cow position: chrX:30420950-30421175 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 164
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 71, 22

Conread position: 176-401
Cow position: chrX:41123049-41122835 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 158
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 65, 24

Conread position: 176-401
Cow position: chrX:45113606-45113391 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 167
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 18, 94

Conread position: 176-402
Cow position: chrX:917378-917607 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 174
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 19, 70

Conread position: 176-402
Cow position: chrX:8925688-8925465 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 169
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 17, 113

Conread position: 176-402
Cow position: chrX:14883971-14884200 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 170
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 20, 67

Conread position: 176-402
Cow position: chrX:27680382-27680165 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 167
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 55, 26

Conread position: 176-402
Cow position: chrX:32128003-32128218 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 163
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 63, 25

Conread position: 176-402
Cow position: chrX:34502909-34502682 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 173
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 20, 80

Conread position: 176-402
Cow position: chrX:41674097-41673866 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 165
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 14, 64

Conread position: 176-402
Cow position: chrX:42492530-42492748 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 170
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 65, 26

Conread position: 176-403
Cow position: chrX:15007162-15007390 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 167
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 17, 144

Conread position: 176-403
Cow position: chrX:42994600-42994375 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 179
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 20, 52

Conread position: 176-403
Cow position: chrX:45598614-45598843 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 161
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 24, 82

Conread position: 176-404
Cow position: chrX:4043873-4044090 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 164
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 26, 0

Conread position: 176-404
Cow position: chrX:16416495-16416268 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 173
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 17, 56

Conread position: 176-404
Cow position: chrX:21004668-21004444 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 164
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 20, 48

Conread position: 176-404
Cow position: chrX:23970363-23970149 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 166
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 65, 24

Conread position: 176-404
Cow position: chrX:26625689-26625917 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 170
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 65, 24

Conread position: 176-404
Cow position: chrX:27394035-27394254 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 171
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 20, 65

Conread position: 176-404
Cow position: chrX:32310089-32309866 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 160
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 30, 42

Conread position: 176-404
Cow position: chrX:44961736-44961507 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 159
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 20, 66

Conread position: 176-405
Cow position: chrX:151891-151660 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 167
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 19, 108

Conread position: 176-405
Cow position: chrX:1514423-1514645 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 164
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 65, 26

Conread position: 176-405
Cow position: chrX:1616057-1616292 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 175
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 20, 66

Conread position: 176-405
Cow position: chrX:5872306-5872072 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 173
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 24, 0

Conread position: 176-405
Cow position: chrX:7351288-7351058 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 174
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 20, 166

Conread position: 176-405
Cow position: chrX:10411999-10412227 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 176
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 20, 50

Conread position: 176-405
Cow position: chrX:11656079-11655845 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 172
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 18, 82

Conread position: 176-405
Cow position: chrX:17498070-17497855 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 174
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 18, 105

Conread position: 176-405
Cow position: chrX:17630819-17631043 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 161
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 14, 59

Conread position: 176-405
Cow position: chrX:18694939-18695162 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 170
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 18, 65

Conread position: 176-405
Cow position: chrX:19188925-19188695 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 172
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 20, 102

Conread position: 176-405
Cow position: chrX:21593275-21593042 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 176-405
Cow position: chrX:31489505-31489271 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 159
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 18, 88

Conread position: 176-405
Cow position: chrX:31948950-31949172 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 180
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 19, 43

Conread position: 176-405
Cow position: chrX:34401985-34401756 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 179
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 18, 80

Conread position: 176-405
Cow position: chrX:34754202-34754433 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 167
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 20, 64

Conread position: 176-405
Cow position: chrX:35609976-35609745 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 173
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 19, 114

Conread position: 176-405
Cow position: chrX:38094534-38094766 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 171
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 20, 158

Conread position: 176-405
Cow position: chrX:38964093-38963868 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 179
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 14, 69

Conread position: 176-405
Cow position: chrX:40647973-40647739 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 183
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 20, 80

Conread position: 176-405
Cow position: chrX:41743899-41743672 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 177
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 20, 119

Conread position: 176-405
Cow position: chrX:41878945-41879172 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 166
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 17, 44

Conread position: 176-405
Cow position: chrX:42874971-42874737 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 174
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 20, 198

Conread position: 176-405
Cow position: chrX:43527497-43527262 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 174
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 20, 132

Conread position: 176-405
Cow position: chrX:47756941-47757170 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 166
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 20, 43

Conread position: 176-406
Cow position: chrX:39558363-39558592 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 180
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 19, 67

Conread position: 176-421
Cow position: chrX:30962886-30963128 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 174
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 19, 125

Conread position: 176-442
Cow position: chrX:38936684-38936424 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 187
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 20, 67

Conread position: 177-346
Cow position: chrX:32821016-32820847 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 19, 114

Conread position: 177-386
Cow position: chrX:19019119-19019334 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 157
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 6, 100

Conread position: 177-395
Cow position: chrX:5900455-5900226 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 158
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 19, 126

Conread position: 177-401
Cow position: chrX:40116401-40116188 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 165
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 70, 13

Conread position: 177-404
Cow position: chrX:9855283-9855060 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 163
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 64, 21

Conread position: 177-404
Cow position: chrX:12249786-12249565 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 172
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 17, 59

Conread position: 177-405
Cow position: chrX:16762755-16762530 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 171
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 18, 39

Conread position: 177-405
Cow position: chrX:20151836-20151609 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 173
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 19, 116

Conread position: 177-405
Cow position: chrX:23061420-23061213 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 167
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 70, 20

Conread position: 177-405
Cow position: chrX:34238701-34238480 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 166
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 19, 44

Conread position: 177-405
Cow position: chrX:35284606-35284376 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 176
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 19, 113

Conread position: 177-405
Cow position: chrX:35413607-35413389 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 175
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 19, 67

Conread position: 178-353
Cow position: chrX:31312012-31311836 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 122
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 178-368
Cow position: chrX:29544890-29545084 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 140
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 18, 66

Conread position: 178-381
Cow position: chrX:37781126-37781330 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 154
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 19, 80

Conread position: 178-391
Cow position: chrX:48684239-48684450 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 15, 114

Conread position: 178-392
Cow position: chrX:35542880-35542663 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 161
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 17, 78

Conread position: 178-399
Cow position: chrX:22074779-22074565 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 154
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 22, 0

Conread position: 178-401
Cow position: chrX:37232398-37232172 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 167
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 16, 65

Conread position: 178-402
Cow position: chrX:11073208-11073429 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 173
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 15, 55

Conread position: 178-403
Cow position: chrX:27431929-27432158 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 164
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 18, 78

Conread position: 178-404
Cow position: chrX:10306659-10306430 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 159
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 18, 63

Conread position: 178-404
Cow position: chrX:21672541-21672311 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 168
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 18, 0

Conread position: 178-404
Cow position: chrX:35387917-35388147 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 167
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 18, 65

Conread position: 178-404
Cow position: chrX:41884429-41884658 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 168
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 16, 48

Conread position: 178-405
Cow position: chrX:1810178-1810402 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 167
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 56, 34

Conread position: 178-405
Cow position: chrX:7571888-7571665 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 170
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 17, 77

Conread position: 178-405
Cow position: chrX:10865882-10866108 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 165
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 15, 64

Conread position: 178-405
Cow position: chrX:12309401-12309630 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 171
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 20, 91

Conread position: 178-405
Cow position: chrX:20583005-20582789 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 166
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 18, 36

Conread position: 178-405
Cow position: chrX:26440793-26441021 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 173
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 18, 65

Conread position: 178-405
Cow position: chrX:27442570-27442796 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 162
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 18, 84

Conread position: 178-405
Cow position: chrX:29289564-29289335 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 167
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 18, 56

Conread position: 178-405
Cow position: chrX:35042210-35041978 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 164
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 13, 65

Conread position: 178-405
Cow position: chrX:40269473-40269235 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 172
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 16, 78

Conread position: 178-405
Cow position: chrX:40557696-40557917 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 164
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 16, 78

Conread position: 178-405
Cow position: chrX:42171311-42171540 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 175
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 17, 63

Conread position: 178-405
Cow position: chrX:45414315-45414541 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 158
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 18, 64

Conread position: 178-433
Cow position: chrX:38840874-38840618 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 168
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 18, 87

Conread position: 179-353
Cow position: chrX:33000887-33000714 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 16, 77

Conread position: 179-386
Cow position: chrX:46072836-46073044 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 150
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 17, 64

Conread position: 179-388
Cow position: chrX:17042677-17042466 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 150
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 10, 111

Conread position: 179-392
Cow position: chrX:7513494-7513288 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 153
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 66, 22

Conread position: 179-395
Cow position: chrX:22822033-22821816 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 148
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 19, 63

Conread position: 179-397
Cow position: chrX:36975934-36975716 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 161
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 17, 49

Conread position: 179-398
Cow position: chrX:13323013-13323234 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 153
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 23, 59

Conread position: 179-398
Cow position: chrX:36840854-36840639 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 149
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 10, 21

Conread position: 179-400
Cow position: chrX:20697623-20697844 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 164
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 62, 110

Conread position: 179-401
Cow position: chrX:27771979-27772193 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 159
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 15, 62

Conread position: 179-402
Cow position: chrX:34454649-34454431 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 164
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 16, 37

Conread position: 179-403
Cow position: chrX:44737001-44737230 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 163
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 15, 53

Conread position: 179-404
Cow position: chrX:32420202-32419970 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 163
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 15, 125

Conread position: 179-404
Cow position: chrX:41403963-41403729 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 165
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 16, 0

Conread position: 179-404
Cow position: chrX:41410511-41410277 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 165
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 16, 0

Conread position: 179-405
Cow position: chrX:1055410-1055629 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 163
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 17, 53

Conread position: 179-405
Cow position: chrX:2467866-2467639 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 175
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 60, 18

Conread position: 179-405
Cow position: chrX:7497224-7497006 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 165
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 10, 56

Conread position: 179-405
Cow position: chrX:12018276-12018034 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 178
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 14, 64

Conread position: 179-405
Cow position: chrX:15485640-15485869 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 169
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 16, 113

Conread position: 179-405
Cow position: chrX:15545876-15545656 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 168
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 16, 31

Conread position: 179-405
Cow position: chrX:22813051-22812821 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 176
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 18, 195

Conread position: 179-405
Cow position: chrX:25035395-25035628 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 163
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 17, 197

Conread position: 179-405
Cow position: chrX:25419173-25419402 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 158
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 17, 47

Conread position: 179-405
Cow position: chrX:27509039-27509261 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 164
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 17, 59

Conread position: 179-405
Cow position: chrX:27516513-27516291 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 167
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 17, 64

Conread position: 179-405
Cow position: chrX:30133336-30133565 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 163
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 13, 164

Conread position: 179-405
Cow position: chrX:30162981-30162756 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 155
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 17, 123

Conread position: 179-405
Cow position: chrX:40452225-40452454 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 168
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 17, 64

Conread position: 179-405
Cow position: chrX:40789193-40788964 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 155
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 17, 57

Conread position: 179-406
Cow position: chrX:35273339-35273102 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 166
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 15, 47

Conread position: 179-443
Cow position: chrX:4632867-4633127 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 189
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 17, 37

Conread position: 179-451
Cow position: chrX:2383473-2383201 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 189
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 17, 64

Conread position: 180-389
Cow position: chrX:29509458-29509669 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 163
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 16, 112

Conread position: 180-404
Cow position: chrX:21064265-21064046 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 161
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 16, 52

Conread position: 180-404
Cow position: chrX:33493760-33493535 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 157
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 14, 76

Conread position: 180-404
Cow position: chrX:40826768-40826987 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 167
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 15, 92

Conread position: 180-405
Cow position: chrX:11844265-11844482 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 167
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 15, 36

Conread position: 180-405
Cow position: chrX:28846898-28847120 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 166
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 16, 104

Conread position: 180-405
Cow position: chrX:33020467-33020245 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 161
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 15, 63

Conread position: 180-405
Cow position: chrX:47344277-47344053 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 164
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 16, 75

Conread position: 182-404
Cow position: chrX:25411822-25411600 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 171
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 14, 61

Conread position: 182-405
Cow position: chrX:35409634-35409427 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 158
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 68, 19

Conread position: 183-376
Cow position: chrX:27174977-27174782 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 150
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 12, 120

Conread position: 183-389
Cow position: chrX:21642498-21642703 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 143
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 13, 106

Conread position: 183-396
Cow position: chrX:877053-877255 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 61, 18

Conread position: 183-401
Cow position: chrX:14924981-14924763 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 174
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 12, 124

Conread position: 183-402
Cow position: chrX:40480888-40481109 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 163
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 13, 178

Conread position: 183-403
Cow position: chrX:11675043-11674825 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 157
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 13, 36

Conread position: 183-404
Cow position: chrX:44834830-44835056 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 155
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 14, 88

Conread position: 183-405
Cow position: chrX:21663285-21663068 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 163
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 12, 38

Conread position: 183-405
Cow position: chrX:24105604-24105385 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 168
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 12, 31

Conread position: 183-405
Cow position: chrX:37843701-37843481 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 167
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 8, 21

Conread position: 183-405
Cow position: chrX:38967628-38967409 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 169
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 13, 60

Conread position: 183-405
Cow position: chrX:44054787-44054561 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 161
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 10, 124

Conread position: 183-408
Cow position: chrX:38218688-38218471 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 161
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 13, 58

Conread position: 185-401
Cow position: chrX:23299937-23299717 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 151
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 11, 57

Conread position: 185-404
Cow position: chrX:21833868-21833645 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 150
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 9, 55

Conread position: 185-404
Cow position: chrX:24587471-24587694 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 151
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 9, 55

Conread position: 185-405
Cow position: chrX:14163174-14162950 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 148
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 185-405
Cow position: chrX:16703653-16703429 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 150
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 9, 55

Conread position: 185-405
Cow position: chrX:16711937-16711713 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 151
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 9, 55

Conread position: 185-405
Cow position: chrX:18077927-18078151 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 156
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 9, 55

Conread position: 185-405
Cow position: chrX:18194894-18194672 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 153
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 9, 55

Conread position: 185-405
Cow position: chrX:22493990-22493766 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 154
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 9, 37

Conread position: 185-405
Cow position: chrX:23264454-23264678 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 152
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 9, 55

Conread position: 185-405
Cow position: chrX:23571817-23572041 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 150
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 9, 0

Conread position: 185-405
Cow position: chrX:26531941-26531717 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 152
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 9, 0

Conread position: 185-405
Cow position: chrX:30228130-30228352 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 150
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 11, 53

Conread position: 185-405
Cow position: chrX:35240845-35240623 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 154
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 9, 55

Conread position: 185-405
Cow position: chrX:45787109-45786889 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 150
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 9, 55

Conread position: 186-405
Cow position: chrX:31436453-31436239 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 163
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 10, 68

Conread position: 186-405
Cow position: chrX:32583831-32584054 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 155
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 8, 54

Conread position: 189-404
Cow position: chrX:2206579-2206784 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 158
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 52, 78

Conread position: 191-405
Cow position: chrX:5123388-5123602 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 149
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 57, 11

Conread position: 191-405
Cow position: chrX:28157466-28157244 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 162
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 60, 13

Conread position: 191-405
Cow position: chrX:45904151-45903937 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 143
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 62, 11

Conread position: 192-405
Cow position: chrX:7178866-7178668 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 156
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 52, 30

Conread position: 192-405
Cow position: chrX:36778380-36778165 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 152
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 49, 0

Conread position: 193-366
Cow position: chrX:1176012-1176185 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 119
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 193-366
Cow position: chrX:23785630-23785452 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 137
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 8, 168

Conread position: 193-387
Cow position: chrX:16541704-16541899 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 48, 178

Conread position: 193-390
Cow position: chrX:7721956-7721758 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 151
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 27, 38

Conread position: 193-392
Cow position: chrX:42381135-42381328 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 148
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 48, 30

Conread position: 193-396
Cow position: chrX:45566603-45566398 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 145
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 48, 27

Conread position: 193-397
Cow position: chrX:9201517-9201314 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 141
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 48, 60

Conread position: 193-397
Cow position: chrX:17231700-17231501 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 148
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 48, 31

Conread position: 193-399
Cow position: chrX:31260660-31260865 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 147
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 54, 42

Conread position: 193-402
Cow position: chrX:9997368-9997571 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 162
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 56, 47

Conread position: 193-403
Cow position: chrX:42587461-42587668 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 143
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 47, 58

Conread position: 193-404
Cow position: chrX:20710042-20709830 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 150
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 54, 47

Conread position: 193-404
Cow position: chrX:23514048-23514258 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 168
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 51, 47

Conread position: 193-404
Cow position: chrX:33855266-33855473 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 151
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 48, 59

Conread position: 193-404
Cow position: chrX:42011246-42011040 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 150
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 37, 0

Conread position: 193-404
Cow position: chrX:43049316-43049102 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 154
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 48, 0

Conread position: 193-404
Cow position: chrX:46045013-46044804 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 148
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 51, 16

Conread position: 193-405
Cow position: chrX:2425150-2425363 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 144
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 54, 44

Conread position: 193-405
Cow position: chrX:2478656-2478868 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 145
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 51, 44

Conread position: 193-405
Cow position: chrX:4269094-4269309 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 152
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 42, 98

Conread position: 193-405
Cow position: chrX:6544222-6544015 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 154
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 48, 9

Conread position: 193-405
Cow position: chrX:9416726-9416934 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 165
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 48, 60

Conread position: 193-405
Cow position: chrX:9635218-9635422 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 42, 0

Conread position: 193-405
Cow position: chrX:16289590-16289803 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 141
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 193-405
Cow position: chrX:19930618-19930416 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 156
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 27, 0

Conread position: 193-405
Cow position: chrX:24424421-24424630 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 149
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 56, 47

Conread position: 193-405
Cow position: chrX:25338152-25337938 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 152
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 44, 0

Conread position: 193-405
Cow position: chrX:30143313-30143526 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 149
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 20, 26

Conread position: 193-405
Cow position: chrX:30454650-30454863 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 146
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 51, 44

Conread position: 193-405
Cow position: chrX:32094478-32094691 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 144
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 51, 44

Conread position: 193-405
Cow position: chrX:32170920-32171123 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 153
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 48, 32

Conread position: 193-405
Cow position: chrX:36249894-36250103 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 151
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 46, 106

Conread position: 193-405
Cow position: chrX:38006797-38007009 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 153
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 48, 60

Conread position: 193-405
Cow position: chrX:46032753-46032959 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 149
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 53, 84

Conread position: 193-405
Cow position: chrX:46770992-46771213 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 158
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 48, 117

Conread position: 193-406
Cow position: chrX:15139578-15139787 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 51, 47

Conread position: 193-429
Cow position: chrX:24441275-24441513 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 154
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 196-402
Cow position: chrX:44731562-44731356 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 140
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 42, 57

Conread position: 196-405
Cow position: chrX:4123802-4123594 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 157
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 47, 108

Conread position: 199-404
Cow position: chrX:38642223-38642020 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 147
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 29, 55

Conread position: 199-405
Cow position: chrX:11581906-11581693 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 152
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 42, 81

Conread position: 199-405
Cow position: chrX:22482725-22482930 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 149
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 88, 0

Conread position: 200-405
Cow position: chrX:35937120-35937313 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 145
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 201-405
Cow position: chrX:11806054-11806258 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 138
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 40, 52

Conread position: 201-405
Cow position: chrX:20877799-20878004 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 142
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 43, 36

Conread position: 201-405
Cow position: chrX:25945873-25946078 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 140
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 46, 38

Conread position: 201-405
Cow position: chrX:46722775-46722982 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 154
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 40, 0

Conread position: 202-388
Cow position: chrX:16324006-16324187 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 135
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 39, 71

Conread position: 202-400
Cow position: chrX:24201145-24200957 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 145
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 31, 39

Conread position: 202-402
Cow position: chrX:7806338-7806137 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 143
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 167, 10

Conread position: 202-402
Cow position: chrX:17794941-17794747 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 150
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 39, 51

Conread position: 202-403
Cow position: chrX:45373329-45373531 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 140
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 29, 97

Conread position: 202-404
Cow position: chrX:754921-754718 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 143
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 42, 37

Conread position: 202-404
Cow position: chrX:9954104-9953901 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 144
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 39, 0

Conread position: 202-404
Cow position: chrX:24132192-24132391 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 143
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 37, 23

Conread position: 202-405
Cow position: chrX:1550913-1550709 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 139
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 42, 35

Conread position: 202-405
Cow position: chrX:5288724-5288928 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 137
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 202-405
Cow position: chrX:15531192-15531396 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 136
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 202-405
Cow position: chrX:18223375-18223172 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 136
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 51, 168

Conread position: 202-405
Cow position: chrX:19333206-19333410 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 135
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 202-405
Cow position: chrX:22815904-22815700 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 137
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 202-405
Cow position: chrX:25288716-25288920 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 135
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 202-405
Cow position: chrX:29356550-29356346 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 135
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 54, 0

Conread position: 202-405
Cow position: chrX:32038880-32039084 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 136
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 202-405
Cow position: chrX:34333237-34333441 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 135
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 202-405
Cow position: chrX:46578892-46579096 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 140
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 30, 20

Conread position: 202-405
Cow position: chrX:48371055-48370855 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 142
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 39, 12

Conread position: 203-399
Cow position: chrX:38071807-38072006 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 146
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 41, 37

Conread position: 204-403
Cow position: chrX:42469986-42470176 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 144
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 48, 0

Conread position: 205-392
Cow position: chrX:13265668-13265848 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 36, 48

Conread position: 206-405
Cow position: chrX:23583516-23583317 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 148
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 38, 20

Conread position: 206-405
Cow position: chrX:26619407-26619604 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 137
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 90, 0

Conread position: 206-405
Cow position: chrX:28111461-28111265 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 143
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 23, 35

Conread position: 206-435
Cow position: chrX:27106219-27105986 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 161
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 12, 35

Conread position: 208-398
Cow position: chrX:6640082-6639890 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 146
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 32, 83

Conread position: 208-403
Cow position: chrX:42585119-42585308 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 139
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 32, 45

Conread position: 209-404
Cow position: chrX:42499073-42499269 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 152
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 20, 46

Conread position: 212-405
Cow position: chrX:15596992-15596797 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 143
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 29, 159

Conread position: 216-403
Cow position: chrX:42855359-42855169 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 148
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 26, 0

Conread position: 216-405
Cow position: chrX:35268826-35268649 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 145
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 25, 37

Conread position: 217-387
Cow position: chrX:13177522-13177688 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 27, 22

Conread position: 217-392
Cow position: chrX:18812196-18812030 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 132
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 25, 0

Conread position: 217-403
Cow position: chrX:27590092-27590279 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 131
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 36, 0

Conread position: 217-404
Cow position: chrX:27498716-27498528 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 130
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 32, 22

Conread position: 217-405
Cow position: chrX:11949549-11949734 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 133
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 27, 20

Conread position: 217-405
Cow position: chrX:22538008-22538195 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 132
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 27, 22

Conread position: 217-405
Cow position: chrX:37416129-37416316 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 36, 78

Conread position: 217-405
Cow position: chrX:38151637-38151447 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 133
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 27, 20

Conread position: 217-405
Cow position: chrX:46606565-46606751 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 132
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 31, 22

Conread position: 218-415
Cow position: chrX:4942812-4943002 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 23, 35

Conread position: 226-405
Cow position: chrX:48536728-48536907 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 15, 27

Conread position: 227-403
Cow position: chrX:8492825-8492997 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 126
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 7, 0

Conread position: 230-402
Cow position: chrX:42086793-42086624 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 10, 0

Conread position: 230-404
Cow position: chrX:38935218-38935041 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 231-405
Cow position: chrX:11982062-11981890 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 128
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 63, 9

Conread position: 232-404
Cow position: chrX:10373248-10373067 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 15, 8

Conread position: 235-405
Cow position: chrX:42507721-42507888 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 54, 0

Conread position: 236-400
Cow position: chrX:9252253-9252414 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 15, 0

Conread position: 236-402
Cow position: chrX:126715-126554 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 236-402
Cow position: chrX:2523802-2523968 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 33, 17

Conread position: 236-404
Cow position: chrX:8517800-8517636 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 122
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 236-405
Cow position: chrX:11358136-11358306 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 119
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 236-405
Cow position: chrX:12001218-12001388 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 120
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 236-405
Cow position: chrX:13448199-13448029 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 118
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 236-405
Cow position: chrX:15008503-15008673 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 118
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 236-405
Cow position: chrX:28057866-28058036 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 118
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 236-405
Cow position: chrX:33764273-33764103 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 118
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 237-398
Cow position: chrX:32623508-32623349 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 15, 0

Conread position: 237-404
Cow position: chrX:31745123-31745287 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 70, 14

Conread position: 237-405
Cow position: chrX:21795418-21795255 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 121
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 65, 0

Conread position: 237-405
Cow position: chrX:32978331-32978497 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 15, 0

Conread position: 237-405
Cow position: chrX:39346859-39347027 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 97, 132

Conread position: 238-401
Cow position: chrX:9838065-9837901 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 117
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 238-405
Cow position: chrX:26883209-26883375 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 121
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 11, 65

Conread position: 245-402
Cow position: chrX:14908933-14908778 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 123, 0

Conread position: 245-402
Cow position: chrX:25283235-25283384 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 41, 0

Conread position: 245-402
Cow position: chrX:25301836-25301991 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 245-402
Cow position: chrX:37299515-37299358 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 115
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 97, 121

Conread position: 245-403
Cow position: chrX:45787566-45787415 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 245-404
Cow position: chrX:2029308-2029150 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 114
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 123, 0

Conread position: 245-405
Cow position: chrX:6659294-6659132 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 34, 90

Conread position: 245-405
Cow position: chrX:7382238-7382082 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 41, 0

Conread position: 245-405
Cow position: chrX:16531912-16531758 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 40, 0

Conread position: 245-405
Cow position: chrX:19690136-19689979 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 127
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 130, 0

Conread position: 246-402
Cow position: chrX:7692548-7692701 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 113
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 73, 0

Conread position: 246-402
Cow position: chrX:25205636-25205480 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 246-402
Cow position: chrX:43647829-43647982 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 124, 40

Conread position: 246-403
Cow position: chrX:9360800-9360644 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 114
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 76, 0

Conread position: 246-403
Cow position: chrX:17271371-17271528 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 111
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 246-404
Cow position: chrX:44908233-44908082 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 246-405
Cow position: chrX:25848834-25848678 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 114
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 123, 0

Conread position: 247-405
Cow position: chrX:6607336-6607180 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 122, 0

Conread position: 248-405
Cow position: chrX:29049876-29049729 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 252-405
Cow position: chrX:20168115-20167963 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 69, 21

Conread position: 253-405
Cow position: chrX:32870876-32871027 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 89, 0

Conread position: 254-417
Cow position: chrX:40540234-40540396 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 118
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 159, 113

Conread position: 274-399
Cow position: chrX:22115392-22115513 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 106, 0

Conread position: 278-404
Cow position: chrX:33519503-33519377 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 278-405
Cow position: chrX:32747546-32747417 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 75, 0

Conread position: 287-404
Cow position: chrX:48578292-48578175 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 91
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 291-405
Cow position: chrX:616532-616647 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 91
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 299-403
Cow position: chrX:33205127-33205231 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 302-405
Cow position: chrX:27176458-27176561 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 84
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 305-405
Cow position: chrX:39555958-39556058 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 85
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.