Cow genome map

Conread name: Ss1.1-Lym1-jns97_C07.f.5

Conread position: 29-153
Cow position: chr10:60490595-60490466 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 43, 0

Conread position: 75-788
Cow position: chr10:38545606-38546318 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 36

Conread position: 154-580
Cow position: chr10:42629170-42628737 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 85

Conread position: 178-429
Cow position: chr10:8339422-8339168 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 17

Conread position: 211-499
Cow position: chr10:54978978-54979269 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 66

Conread position: 245-792
Cow position: chr10:21900759-21901294 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 356
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 9, 88

Conread position: 247-632
Cow position: chr10:31524252-31523855 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 24

Conread position: 271-791
Cow position: chr10:38847778-38847271 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 131

Conread position: 271-791
Cow position: chr10:44295269-44294745 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 342
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 27, 18

Conread position: 276-660
Cow position: chr10:33347029-33346639 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 51

Conread position: 276-791
Cow position: chr10:24298428-24298950 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 65

Conread position: 278-449
Cow position: chr10:60490022-60489846 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 140
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 59, 46

Conread position: 278-632
Cow position: chr10:8327846-8328210 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 267
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 97, 33

Conread position: 278-721
Cow position: chr10:10415814-10415387 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 46

Conread position: 278-727
Cow position: chr10:34317871-34318326 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 61

Conread position: 278-783
Cow position: chr10:14860393-14859887 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 47

Conread position: 278-791
Cow position: chr10:46191781-46191269 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 54

Conread position: 278-792
Cow position: chr10:15861705-15862234 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 162

Conread position: 280-694
Cow position: chr10:49310913-49310504 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 47

Conread position: 282-680
Cow position: chr10:20371553-20371950 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 279
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 16, 153

Conread position: 285-783
Cow position: chr10:41351340-41351845 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 192

Conread position: 288-583
Cow position: chr10:31537675-31537377 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 200
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 10, 51

Conread position: 298-532
Cow position: chr10:22843159-22842914 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 174
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 46, 138

Conread position: 301-783
Cow position: chr10:184676-184171 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 323
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 45, 29

Conread position: 302-783
Cow position: chr10:38404117-38404598 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 313
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 195, 39

Conread position: 304-546
Cow position: chr10:60192534-60192281 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 176
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 69, 25

Conread position: 306-791
Cow position: chr10:3543194-3543673 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 33

Conread position: 335-473
Cow position: chr10:42679740-42679601 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 21, 10

Conread position: 341-531
Cow position: chr10:29846293-29846486 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 143
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 7, 23

Conread position: 341-782
Cow position: chr10:21487274-21486826 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 23

Conread position: 341-782
Cow position: chr10:38345002-38345453 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 24

Conread position: 341-790
Cow position: chr10:124668-124212 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 19

Conread position: 341-790
Cow position: chr10:8290337-8289886 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 22

Conread position: 341-790
Cow position: chr10:16925894-16925437 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 22

Conread position: 341-790
Cow position: chr10:25359758-25359302 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 23

Conread position: 341-790
Cow position: chr10:32651092-32650635 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 23

Conread position: 341-790
Cow position: chr10:37770180-37769725 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 23

Conread position: 347-766
Cow position: chr10:2122910-2123337 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 16

Conread position: 348-776
Cow position: chr10:29696585-29696153 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 85

Conread position: 349-788
Cow position: chr10:14952222-14951804 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 285
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 16, 152

Conread position: 350-736
Cow position: chr10:22101579-22101188 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 13

Conread position: 368-790
Cow position: chr10:24977805-24978228 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 190

Conread position: 371-631
Cow position: chr10:23432141-23431873 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 180
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 132, 33

Conread position: 374-714
Cow position: chr10:40152127-40152476 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 182

Conread position: 375-791
Cow position: chr10:10477810-10478242 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 206

Conread position: 376-468
Cow position: chr10:24061481-24061573 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 83
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 376-579
Cow position: chr10:47157273-47157065 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 156
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 47, 22

Conread position: 376-783
Cow position: chr10:32578613-32578213 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 20

Conread position: 376-791
Cow position: chr10:13365545-13365949 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 200

Conread position: 376-791
Cow position: chr10:34686219-34685797 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 203

Conread position: 376-791
Cow position: chr10:39853685-39854113 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 206

Conread position: 376-791
Cow position: chr10:62216932-62216508 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 201

Conread position: 376-791
Cow position: chr10:62778673-62778247 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 201

Conread position: 377-499
Cow position: chr10:56064997-56064875 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 104
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 377-552
Cow position: chr10:19802877-19802700 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 139
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 123, 0

Conread position: 377-661
Cow position: chr10:19758672-19758388 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 196

Conread position: 377-764
Cow position: chr10:19495962-19496357 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 199

Conread position: 377-775
Cow position: chr10:39040978-39041388 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 201

Conread position: 377-782
Cow position: chr10:39817039-39817440 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 199

Conread position: 377-783
Cow position: chr10:280297-280710 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 189

Conread position: 377-783
Cow position: chr10:4191902-4192308 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 206

Conread position: 377-783
Cow position: chr10:14804160-14803744 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 200

Conread position: 377-790
Cow position: chr10:1375857-1375439 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 201

Conread position: 377-791
Cow position: chr10:11685347-11685766 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 199

Conread position: 377-791
Cow position: chr10:21400347-21400770 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 199

Conread position: 377-791
Cow position: chr10:21740428-21740850 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 199

Conread position: 377-791
Cow position: chr10:25564934-25565344 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 199

Conread position: 377-791
Cow position: chr10:39180107-39179685 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 199

Conread position: 377-791
Cow position: chr10:41157771-41157349 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 169

Conread position: 377-791
Cow position: chr10:41567426-41567008 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 11

Conread position: 377-791
Cow position: chr10:51952298-51952704 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 95

Conread position: 377-791
Cow position: chr10:57559212-57559647 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 173

Conread position: 377-792
Cow position: chr10:41877242-41876819 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 198

Conread position: 378-481
Cow position: chr10:68598970-68599073 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 91
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 378-791
Cow position: chr10:25498675-25498253 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 198

Conread position: 378-791
Cow position: chr10:47907101-47906679 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 198

Conread position: 381-499
Cow position: chr10:19496996-19497114 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 99
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 383-578
Cow position: chr10:57989676-57989871 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 153
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 113, 18

Conread position: 383-790
Cow position: chr10:19511924-19511508 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 193

Conread position: 383-790
Cow position: chr10:62408539-62408949 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 198

Conread position: 387-768
Cow position: chr10:47063730-47063342 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 255
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 108, 179

Conread position: 388-790
Cow position: chr10:7282374-7282780 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 193

Conread position: 392-783
Cow position: chr10:46694067-46694466 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 184

Conread position: 404-783
Cow position: chr10:38538196-38538588 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 183

Conread position: 410-791
Cow position: chr10:39905232-39904828 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 282
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 91, 108

Conread position: 421-783
Cow position: chr10:24313556-24313919 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 237
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 80, 154

Conread position: 439-791
Cow position: chr10:29632601-29632959 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 137

Conread position: 444-687
Cow position: chr10:55093496-55093247 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 193
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 54, 130

Conread position: 444-790
Cow position: chr10:19143081-19143436 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 255
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 53, 111

Conread position: 449-657
Cow position: chr10:28931774-28931984 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 153
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 44, 12

Conread position: 475-791
Cow position: chr10:276815-276495 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 226
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 26, 70

Conread position: 484-791
Cow position: chr10:19840366-19840054 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 174
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 15, 90

Conread position: 497-783
Cow position: chr10:54059157-54059445 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 203
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 116, 76

Show alignments to all cow chromosomes.