Cow genome map
| Conread name: | Ss1.1-Lym1-jns97_C07.f.5 |
| Conread position: | 154-791 |
| Cow position: | chr12:15950795-15951433 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 102 |
| Conread position: | 278-783 |
| Cow position: | chr12:21500452-21499953 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 339 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 75, 95 |
| Conread position: | 310-668 |
| Cow position: | chr12:18501347-18501000 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 65, 19 |
| Conread position: | 338-790 |
| Cow position: | chr12:42859541-42859987 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 22 |
| Conread position: | 341-782 |
| Cow position: | chr12:11098526-11098076 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 341-783 |
| Cow position: | chr12:1402774-1402325 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 341-790 |
| Cow position: | chr12:6406367-6406818 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 341-790 |
| Cow position: | chr12:25100777-25101234 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 22 |
| Conread position: | 342-790 |
| Cow position: | chr12:27932660-27933118 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 237 |
| Conread position: | 343-790 |
| Cow position: | chr12:22205466-22205919 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 20 |
| Conread position: | 347-560 |
| Cow position: | chr12:23240280-23240065 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 5, 28 |
| Conread position: | 347-666 |
| Cow position: | chr12:2838575-2838903 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 28, 112 |
| Conread position: | 348-788 |
| Cow position: | chr12:21942049-21941605 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 126 |
| Conread position: | 352-645 |
| Cow position: | chr12:21198232-21197935 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 212 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 147, 11 |
| Conread position: | 356-791 |
| Cow position: | chr12:20997865-20998293 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 7 |
| Conread position: | 374-569 |
| Cow position: | chr12:5861405-5861206 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 160 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 109, 23 |
| Conread position: | 375-791 |
| Cow position: | chr12:22332875-22332448 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 143 |
| Conread position: | 376-791 |
| Cow position: | chr12:3049-2625 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 14 |
| Conread position: | 376-791 |
| Cow position: | chr12:8311431-8311012 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 200 |
| Conread position: | 376-791 |
| Cow position: | chr12:21254406-21254829 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 202 |
| Conread position: | 376-791 |
| Cow position: | chr12:21902189-21901773 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 45 |
| Conread position: | 376-791 |
| Cow position: | chr12:45261873-45261441 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 195 |
| Conread position: | 377-473 |
| Cow position: | chr12:4157626-4157530 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 377-484 |
| Cow position: | chr12:31545027-31544920 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 93 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 377-647 |
| Cow position: | chr12:33986411-33986139 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 199 |
| Conread position: | 377-782 |
| Cow position: | chr12:8677872-8678287 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 200 |
| Conread position: | 377-783 |
| Cow position: | chr12:251809-252221 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 75 |
| Conread position: | 377-783 |
| Cow position: | chr12:2282795-2282381 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 201 |
| Conread position: | 377-790 |
| Cow position: | chr12:28765770-28766189 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 199 |
| Conread position: | 377-791 |
| Cow position: | chr12:21426943-21426520 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 199 |
| Conread position: | 377-791 |
| Cow position: | chr12:26946741-26947154 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 22 |
| Conread position: | 377-791 |
| Cow position: | chr12:32653793-32653371 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 199 |
| Conread position: | 377-791 |
| Cow position: | chr12:37558805-37558381 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 200 |
| Conread position: | 377-791 |
| Cow position: | chr12:43031136-43031556 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 101 |
| Conread position: | 377-792 |
| Cow position: | chr12:3361153-3360729 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 199 |
| Conread position: | 383-790 |
| Cow position: | chr12:14662390-14662784 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 193 |
| Conread position: | 421-783 |
| Cow position: | chr12:1137778-1137421 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 190, 65 |
| Conread position: | 452-783 |
| Cow position: | chr12:21207868-21207529 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 45, 126 |
| Conread position: | 457-791 |
| Cow position: | chr12:26141983-26141640 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 239 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 44, 121 |
| Conread position: | 505-791 |
| Cow position: | chr12:8982308-8982590 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 57, 20 |
Show alignments to all cow chromosomes.