Cow genome map
| Conread name: | Ss1.1-Lym1-jns97_C07.f.5 |
| Conread position: | 35-404 |
| Cow position: | chr13:26844148-26843794 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 23, 86 |
| Conread position: | 154-486 |
| Cow position: | chr13:15451306-15451637 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 87 |
| Conread position: | 154-781 |
| Cow position: | chr13:20542123-20542751 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 88 |
| Conread position: | 154-792 |
| Cow position: | chr13:54284826-54284187 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 51 |
| Conread position: | 255-605 |
| Cow position: | chr13:16343059-16343414 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 39, 53 |
| Conread position: | 256-783 |
| Cow position: | chr13:2306644-2306116 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 340 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 92, 6 |
| Conread position: | 259-532 |
| Cow position: | chr13:34111434-34111163 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 74, 186 |
| Conread position: | 286-759 |
| Cow position: | chr13:34767175-34767638 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 48 |
| Conread position: | 335-791 |
| Cow position: | chr13:33927519-33927957 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 28 |
| Conread position: | 335-791 |
| Cow position: | chr13:34937225-34936748 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 249 |
| Conread position: | 341-542 |
| Cow position: | chr13:32545122-32544917 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 7, 22 |
| Conread position: | 341-622 |
| Cow position: | chr13:4483857-4483576 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 7, 22 |
| Conread position: | 341-782 |
| Cow position: | chr13:3654261-3654697 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 22 |
| Conread position: | 341-782 |
| Cow position: | chr13:4941151-4940700 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 341-783 |
| Cow position: | chr13:15924321-15924769 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 341-790 |
| Cow position: | chr13:31612273-31612729 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 344-660 |
| Cow position: | chr13:46732162-46732480 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 36, 95 |
| Conread position: | 346-775 |
| Cow position: | chr13:15520458-15520892 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 17 |
| Conread position: | 347-782 |
| Cow position: | chr13:32737766-32738207 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 15 |
| Conread position: | 350-782 |
| Cow position: | chr13:34911327-34911754 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 20 |
| Conread position: | 350-783 |
| Cow position: | chr13:34186626-34187074 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 106 |
| Conread position: | 351-791 |
| Cow position: | chr13:3277207-3276763 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 25 |
| Conread position: | 372-790 |
| Cow position: | chr13:34042337-34042758 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 7 |
| Conread position: | 374-495 |
| Cow position: | chr13:11799730-11799852 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 376-631 |
| Cow position: | chr13:4178622-4178882 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 120, 200 |
| Conread position: | 376-748 |
| Cow position: | chr13:3567823-3567433 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 211 |
| Conread position: | 376-772 |
| Cow position: | chr13:33824706-33825105 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 196 |
| Conread position: | 376-783 |
| Cow position: | chr13:30656948-30657351 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 61 |
| Conread position: | 376-790 |
| Cow position: | chr13:62327555-62327975 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 197 |
| Conread position: | 376-791 |
| Cow position: | chr13:34693194-34692768 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 202 |
| Conread position: | 376-791 |
| Cow position: | chr13:56730258-56730676 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 50 |
| Conread position: | 377-525 |
| Cow position: | chr13:676904-676751 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 377-534 |
| Cow position: | chr13:34868770-34868606 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 120, 75 |
| Conread position: | 377-566 |
| Cow position: | chr13:60466365-60466171 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 158 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 377-572 |
| Cow position: | chr13:3058082-3058284 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 163 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 377-728 |
| Cow position: | chr13:2388790-2389154 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 199 |
| Conread position: | 377-765 |
| Cow position: | chr13:35030579-35030179 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 26 |
| Conread position: | 377-782 |
| Cow position: | chr13:9044528-9044124 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 47 |
| Conread position: | 377-790 |
| Cow position: | chr13:1593127-1593547 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 199 |
| Conread position: | 377-790 |
| Cow position: | chr13:35757269-35756847 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 199 |
| Conread position: | 377-791 |
| Cow position: | chr13:2296783-2297193 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 106 |
| Conread position: | 377-791 |
| Cow position: | chr13:4873104-4872682 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 74 |
| Conread position: | 377-791 |
| Cow position: | chr13:13324777-13324358 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 199 |
| Conread position: | 377-791 |
| Cow position: | chr13:17308503-17308080 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 199 |
| Conread position: | 377-791 |
| Cow position: | chr13:21840166-21840589 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 199 |
| Conread position: | 377-791 |
| Cow position: | chr13:31734057-31734475 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 131 |
| Conread position: | 377-791 |
| Cow position: | chr13:32986029-32986444 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 80 |
| Conread position: | 377-791 |
| Cow position: | chr13:49973712-49973288 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 199 |
| Conread position: | 377-791 |
| Cow position: | chr13:50109490-50109069 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 199 |
| Conread position: | 378-782 |
| Cow position: | chr13:34325648-34326064 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 147 |
| Conread position: | 378-791 |
| Cow position: | chr13:34142631-34143053 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 199 |
| Conread position: | 383-485 |
| Cow position: | chr13:22766045-22765943 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 384-788 |
| Cow position: | chr13:2908428-2908840 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 193 |
| Conread position: | 384-791 |
| Cow position: | chr13:31832621-31832207 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 192 |
| Conread position: | 388-790 |
| Cow position: | chr13:6668106-6668517 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 188 |
| Conread position: | 392-680 |
| Cow position: | chr13:47229974-47230265 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 184 |
| Conread position: | 411-790 |
| Cow position: | chr13:33336348-33336716 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 27, 53 |
| Conread position: | 418-783 |
| Cow position: | chr13:23003531-23003902 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 258 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 78, 19 |
| Conread position: | 452-791 |
| Cow position: | chr13:30244780-30245128 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 128 |
| Conread position: | 522-694 |
| Cow position: | chr13:48357183-48357003 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 69, 81 |
| Conread position: | 550-775 |
| Cow position: | chr13:15451649-15451863 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 62, 32 |
Show alignments to all cow chromosomes.