Cow genome map

Conread name: Ss1.1-Lym1-jns97_C07.f.5

Conread position: 127-791
Cow position: chr14:40339843-40339189 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 125

Conread position: 154-299
Cow position: chr14:44377612-44377466 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 25, 0

Conread position: 154-790
Cow position: chr14:45303233-45303879 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 162

Conread position: 154-791
Cow position: chr14:35387022-35387648 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 25

Conread position: 154-791
Cow position: chr14:46084750-46084107 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 15

Conread position: 265-783
Cow position: chr14:47654757-47654235 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 339
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 37, 17

Conread position: 271-741
Cow position: chr14:14309048-14309540 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 328
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 63, 27

Conread position: 273-569
Cow position: chr14:33675826-33675518 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 54

Conread position: 278-593
Cow position: chr14:44580956-44580641 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 226
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 62, 89

Conread position: 278-788
Cow position: chr14:12609189-12608693 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 352
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 66, 49

Conread position: 278-789
Cow position: chr14:22019398-22018888 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 49

Conread position: 286-482
Cow position: chr14:23529008-23529210 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 147
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 59, 37

Conread position: 286-714
Cow position: chr14:37413896-37414329 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 53

Conread position: 290-783
Cow position: chr14:47589860-47589365 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 325
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 38, 63

Conread position: 293-763
Cow position: chr14:9102128-9102583 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 307
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 5, 31

Conread position: 297-655
Cow position: chr14:38146566-38146204 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 255
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 78, 207

Conread position: 299-791
Cow position: chr14:35929162-35928659 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 336
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 72, 96

Conread position: 301-741
Cow position: chr14:43033906-43034352 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 305
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 13, 102

Conread position: 302-779
Cow position: chr14:16846421-16845937 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 317
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 7, 31

Conread position: 303-783
Cow position: chr14:13326163-13326636 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 323
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 45, 35

Conread position: 341-528
Cow position: chr14:40169760-40169955 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 147
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 34, 0

Conread position: 341-545
Cow position: chr14:12743129-12743337 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 158
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 7, 23

Conread position: 341-558
Cow position: chr14:13621204-13621430 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 166
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 27, 0

Conread position: 341-683
Cow position: chr14:5511761-5511419 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 22

Conread position: 341-742
Cow position: chr14:50110504-50110102 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 282
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 7, 16

Conread position: 341-772
Cow position: chr14:7472307-7471877 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 23

Conread position: 341-783
Cow position: chr14:13778894-13778456 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 23

Conread position: 341-783
Cow position: chr14:16919751-16920195 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 22

Conread position: 341-783
Cow position: chr14:45712055-45712485 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 22

Conread position: 341-784
Cow position: chr14:45834094-45833649 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 7

Conread position: 341-790
Cow position: chr14:5529001-5528544 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 23

Conread position: 341-790
Cow position: chr14:11154227-11154670 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 23

Conread position: 341-790
Cow position: chr14:15276641-15277095 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 23

Conread position: 341-790
Cow position: chr14:17685335-17684878 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 23

Conread position: 341-790
Cow position: chr14:19328329-19328786 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 23

Conread position: 342-720
Cow position: chr14:13479796-13480175 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 7

Conread position: 347-790
Cow position: chr14:28993922-28994372 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 16

Conread position: 350-790
Cow position: chr14:46465002-46464553 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 24

Conread position: 350-791
Cow position: chr14:45767929-45767488 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 13

Conread position: 351-772
Cow position: chr14:13864154-13864581 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 12

Conread position: 351-791
Cow position: chr14:44130845-44130402 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 124

Conread position: 351-791
Cow position: chr14:47624481-47624051 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 12

Conread position: 353-790
Cow position: chr14:17001133-17001572 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 10

Conread position: 363-782
Cow position: chr14:38816291-38816709 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 269
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 12, 90

Conread position: 371-696
Cow position: chr14:48405779-48406108 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 215
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 130, 113

Conread position: 371-791
Cow position: chr14:27992405-27992822 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 276
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 122, 22

Conread position: 374-790
Cow position: chr14:38532385-38532812 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 203

Conread position: 376-494
Cow position: chr14:45080950-45080833 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 99
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 67, 0

Conread position: 376-541
Cow position: chr14:45565233-45565064 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 136
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 120, 161

Conread position: 376-580
Cow position: chr14:45770874-45771083 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 90

Conread position: 376-599
Cow position: chr14:45161002-45160775 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 177
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 125, 166

Conread position: 376-661
Cow position: chr14:22242786-22242502 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 201

Conread position: 376-782
Cow position: chr14:50134979-50134562 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 204

Conread position: 376-783
Cow position: chr14:41084876-41085293 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 201

Conread position: 376-784
Cow position: chr14:44377342-44376923 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 208

Conread position: 376-789
Cow position: chr14:36968160-36967740 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 200

Conread position: 376-791
Cow position: chr14:7830635-7831056 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 200

Conread position: 376-791
Cow position: chr14:13660081-13660505 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 19

Conread position: 376-791
Cow position: chr14:23690324-23690742 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 161

Conread position: 376-791
Cow position: chr14:42152228-42151806 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 197

Conread position: 376-791
Cow position: chr14:44226302-44225891 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 161

Conread position: 376-791
Cow position: chr14:44422459-44422039 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 200

Conread position: 376-791
Cow position: chr14:44855522-44855943 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 196

Conread position: 376-791
Cow position: chr14:45851127-45850707 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 205

Conread position: 377-484
Cow position: chr14:43557340-43557233 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 92
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 377-580
Cow position: chr14:5201177-5201387 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 0

Conread position: 377-713
Cow position: chr14:45917322-45916976 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 201

Conread position: 377-783
Cow position: chr14:750474-750059 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 199

Conread position: 377-783
Cow position: chr14:2284243-2283829 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 199

Conread position: 377-783
Cow position: chr14:30585048-30585449 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 16

Conread position: 377-783
Cow position: chr14:33393872-33394286 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 199

Conread position: 377-783
Cow position: chr14:45672141-45672555 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 107

Conread position: 377-790
Cow position: chr14:13302932-13302513 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 101

Conread position: 377-790
Cow position: chr14:16273392-16273813 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 60

Conread position: 377-790
Cow position: chr14:20782360-20781939 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 199

Conread position: 377-790
Cow position: chr14:30596480-30596899 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 79

Conread position: 377-790
Cow position: chr14:37223805-37223385 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 67

Conread position: 377-791
Cow position: chr14:9045470-9045047 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 199

Conread position: 377-791
Cow position: chr14:17491552-17491975 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 199

Conread position: 377-791
Cow position: chr14:23257263-23256841 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 199

Conread position: 377-791
Cow position: chr14:23900896-23901319 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 199

Conread position: 377-791
Cow position: chr14:29047999-29048419 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 186

Conread position: 377-791
Cow position: chr14:45029220-45029631 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 41

Conread position: 378-661
Cow position: chr14:44551785-44551502 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 198

Conread position: 378-687
Cow position: chr14:19620123-19619811 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 198

Conread position: 378-741
Cow position: chr14:42123296-42123653 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 247
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 65, 199

Conread position: 378-783
Cow position: chr14:45205980-45205560 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 78

Conread position: 378-790
Cow position: chr14:13273150-13272741 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 193

Conread position: 381-792
Cow position: chr14:23260028-23260449 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 277
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 120, 15

Conread position: 382-669
Cow position: chr14:34775425-34775139 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 213
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 113, 54

Conread position: 383-665
Cow position: chr14:44287352-44287639 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 193

Conread position: 383-749
Cow position: chr14:22031789-22032162 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 198

Conread position: 383-790
Cow position: chr14:44685941-44685531 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 193

Conread position: 388-790
Cow position: chr14:43553314-43552905 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 264
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 80, 89

Conread position: 390-791
Cow position: chr14:31887561-31887160 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 273
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 103, 147

Conread position: 409-600
Cow position: chr14:48824455-48824260 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 146
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 87, 167

Conread position: 443-790
Cow position: chr14:41755682-41755345 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 239
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 53, 133

Conread position: 514-781
Cow position: chr14:29265196-29265467 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 181
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 99, 57

Show alignments to all cow chromosomes.