Cow genome map

Conread name: Ss1.1-Lym1-jns97_C07.f.5

Conread position: 43-791
Cow position: chr16:25156349-25157082 (view UCSC Genome Browser custom track)
Alignm length: 771
Alignm identity: 564
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 28

Conread position: 50-484
Cow position: chr16:25257490-25257055 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 65

Conread position: 154-631
Cow position: chr16:49235362-49235847 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 171

Conread position: 178-550
Cow position: chr16:29033473-29033097 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 5

Conread position: 178-765
Cow position: chr16:42739657-42740257 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 162

Conread position: 250-449
Cow position: chr16:23807660-23807454 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 159
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 22, 36

Conread position: 257-785
Cow position: chr16:49256900-49257436 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 12

Conread position: 261-499
Cow position: chr16:16273155-16273398 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 66

Conread position: 275-461
Cow position: chr16:5889582-5889392 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 143
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 70, 25

Conread position: 278-729
Cow position: chr16:32935832-32935357 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 49

Conread position: 278-788
Cow position: chr16:9930197-9929685 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 29

Conread position: 278-791
Cow position: chr16:335947-335435 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 60

Conread position: 284-662
Cow position: chr16:10565633-10566012 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 239
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 71, 10

Conread position: 286-566
Cow position: chr16:52814836-52815123 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 204
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 82, 53

Conread position: 294-791
Cow position: chr16:31375635-31376119 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 350
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 81, 45

Conread position: 301-791
Cow position: chr16:47563337-47562822 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 340
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 51, 313

Conread position: 310-598
Cow position: chr16:18499722-18500014 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 17

Conread position: 341-778
Cow position: chr16:10203837-10204266 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 23

Conread position: 341-783
Cow position: chr16:5483916-5483466 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 23

Conread position: 341-788
Cow position: chr16:15492301-15491847 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 20

Conread position: 341-790
Cow position: chr16:407439-407895 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 19

Conread position: 341-790
Cow position: chr16:2727696-2728177 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 328
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 7, 19

Conread position: 341-790
Cow position: chr16:12538332-12538787 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 23

Conread position: 341-790
Cow position: chr16:14666236-14666693 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 23

Conread position: 341-790
Cow position: chr16:23252914-23253366 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 23

Conread position: 341-790
Cow position: chr16:25341559-25341106 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 38

Conread position: 341-790
Cow position: chr16:25441217-25440756 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 23

Conread position: 341-790
Cow position: chr16:25457872-25458333 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 23

Conread position: 341-790
Cow position: chr16:26663342-26662885 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 23

Conread position: 341-790
Cow position: chr16:34529913-34529463 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 36

Conread position: 342-566
Cow position: chr16:30048088-30047857 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 160
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 34, 203

Conread position: 343-782
Cow position: chr16:51686028-51685578 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 7

Conread position: 347-790
Cow position: chr16:8816518-8816968 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 16

Conread position: 350-790
Cow position: chr16:2411383-2411832 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 224

Conread position: 353-790
Cow position: chr16:23982893-23982449 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 48

Conread position: 371-532
Cow position: chr16:25153287-25153128 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 131
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 125, 0

Conread position: 371-694
Cow position: chr16:29983001-29982681 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 213
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 23, 89

Conread position: 371-790
Cow position: chr16:28438222-28438647 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 269
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 43, 212

Conread position: 371-791
Cow position: chr16:11052724-11052304 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 203

Conread position: 372-782
Cow position: chr16:41560215-41559817 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 278
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 12, 62

Conread position: 376-488
Cow position: chr16:29675820-29675932 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 95
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 376-681
Cow position: chr16:19713330-19713639 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 105

Conread position: 376-789
Cow position: chr16:56551679-56551267 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 164

Conread position: 376-790
Cow position: chr16:6548965-6549384 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 200

Conread position: 376-790
Cow position: chr16:25085180-25084760 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 207

Conread position: 376-790
Cow position: chr16:36282956-36282538 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 129

Conread position: 376-791
Cow position: chr16:7906178-7905779 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 205

Conread position: 376-791
Cow position: chr16:10808709-10808299 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 202

Conread position: 376-791
Cow position: chr16:20254752-20255174 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 200

Conread position: 376-791
Cow position: chr16:39821189-39820771 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 198

Conread position: 377-598
Cow position: chr16:31832190-31831963 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 145
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 101, 0

Conread position: 377-680
Cow position: chr16:53045912-53045603 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 377-782
Cow position: chr16:29046580-29046166 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 199

Conread position: 377-783
Cow position: chr16:25188200-25187786 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 198

Conread position: 377-783
Cow position: chr16:43897713-43898124 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 56

Conread position: 377-790
Cow position: chr16:836587-836166 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 199

Conread position: 377-790
Cow position: chr16:1567896-1568316 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 199

Conread position: 377-790
Cow position: chr16:2239182-2239596 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 31

Conread position: 377-790
Cow position: chr16:28471544-28471958 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 9

Conread position: 377-791
Cow position: chr16:32296-31884 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 197

Conread position: 377-791
Cow position: chr16:5661408-5660997 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 199

Conread position: 377-791
Cow position: chr16:6943190-6942759 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 207

Conread position: 377-791
Cow position: chr16:28170805-28171222 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 149

Conread position: 378-611
Cow position: chr16:41757891-41758127 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 158
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 123, 197

Conread position: 378-666
Cow position: chr16:33611520-33611814 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 207
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 93, 152

Conread position: 378-749
Cow position: chr16:16030341-16029965 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 246
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 116, 83

Conread position: 378-784
Cow position: chr16:24154887-24155298 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 267
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 119, 201

Conread position: 378-790
Cow position: chr16:31592350-31592769 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 55

Conread position: 378-791
Cow position: chr16:36361805-36362213 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 143

Conread position: 381-783
Cow position: chr16:5919037-5918629 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 195

Conread position: 383-661
Cow position: chr16:9777637-9777357 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 195

Conread position: 383-783
Cow position: chr16:2483590-2483995 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 194

Conread position: 383-790
Cow position: chr16:15184355-15183940 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 169

Conread position: 383-790
Cow position: chr16:15566296-15565888 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 69

Conread position: 384-495
Cow position: chr16:4302777-4302888 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 387-790
Cow position: chr16:27734253-27734667 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 191

Conread position: 390-729
Cow position: chr16:10437788-10437440 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 193

Conread position: 390-790
Cow position: chr16:40296633-40297038 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 186

Conread position: 405-783
Cow position: chr16:42050857-42051227 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 135

Conread position: 430-791
Cow position: chr16:36232110-36232469 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 141

Conread position: 440-791
Cow position: chr16:11111447-11111801 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 233
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 48, 142

Conread position: 496-782
Cow position: chr16:16276073-16276360 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 204
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 116, 24

Conread position: 500-791
Cow position: chr16:4303047-4303334 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 204
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 108, 64

Conread position: 528-791
Cow position: chr16:54647719-54647463 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 172
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 85, 46

Conread position: 534-790
Cow position: chr16:18687728-18687982 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 182
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 7, 40

Conread position: 581-791
Cow position: chr16:29675960-29676169 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 69, 32

Show alignments to all cow chromosomes.