Cow genome map
Conread name: | Ss1.1-Lym1-jns97_C07.f.5 |
Conread position: | 43-791 |
Cow position: | chr16:25156349-25157082 (view UCSC Genome Browser custom track) |
Alignm length: | 771 |
Alignm identity: | 564 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 315, 28 |
Conread position: | 50-484 |
Cow position: | chr16:25257490-25257055 (view UCSC Genome Browser custom track) |
Alignm length: | 445 |
Alignm identity: | 325 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 65 |
Conread position: | 154-631 |
Cow position: | chr16:49235362-49235847 (view UCSC Genome Browser custom track) |
Alignm length: | 493 |
Alignm identity: | 359 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 171 |
Conread position: | 178-550 |
Cow position: | chr16:29033473-29033097 (view UCSC Genome Browser custom track) |
Alignm length: | 387 |
Alignm identity: | 297 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 5 |
Conread position: | 178-765 |
Cow position: | chr16:42739657-42740257 (view UCSC Genome Browser custom track) |
Alignm length: | 609 |
Alignm identity: | 445 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 162 |
Conread position: | 250-449 |
Cow position: | chr16:23807660-23807454 (view UCSC Genome Browser custom track) |
Alignm length: | 210 |
Alignm identity: | 159 |
Alignm E-value: | 1e-32 |
Alignm gaps (pig, cow): | 22, 36 |
Conread position: | 257-785 |
Cow position: | chr16:49256900-49257436 (view UCSC Genome Browser custom track) |
Alignm length: | 550 |
Alignm identity: | 407 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 96, 12 |
Conread position: | 261-499 |
Cow position: | chr16:16273155-16273398 (view UCSC Genome Browser custom track) |
Alignm length: | 247 |
Alignm identity: | 193 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 86, 66 |
Conread position: | 275-461 |
Cow position: | chr16:5889582-5889392 (view UCSC Genome Browser custom track) |
Alignm length: | 196 |
Alignm identity: | 143 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 70, 25 |
Conread position: | 278-729 |
Cow position: | chr16:32935832-32935357 (view UCSC Genome Browser custom track) |
Alignm length: | 482 |
Alignm identity: | 341 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 67, 49 |
Conread position: | 278-788 |
Cow position: | chr16:9930197-9929685 (view UCSC Genome Browser custom track) |
Alignm length: | 528 |
Alignm identity: | 361 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 67, 29 |
Conread position: | 278-791 |
Cow position: | chr16:335947-335435 (view UCSC Genome Browser custom track) |
Alignm length: | 528 |
Alignm identity: | 369 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 97, 60 |
Conread position: | 284-662 |
Cow position: | chr16:10565633-10566012 (view UCSC Genome Browser custom track) |
Alignm length: | 387 |
Alignm identity: | 239 |
Alignm E-value: | 4e-21 |
Alignm gaps (pig, cow): | 71, 10 |
Conread position: | 286-566 |
Cow position: | chr16:52814836-52815123 (view UCSC Genome Browser custom track) |
Alignm length: | 293 |
Alignm identity: | 204 |
Alignm E-value: | 5e-34 |
Alignm gaps (pig, cow): | 82, 53 |
Conread position: | 294-791 |
Cow position: | chr16:31375635-31376119 (view UCSC Genome Browser custom track) |
Alignm length: | 517 |
Alignm identity: | 350 |
Alignm E-value: | 5.04467e-44 |
Alignm gaps (pig, cow): | 81, 45 |
Conread position: | 301-791 |
Cow position: | chr16:47563337-47562822 (view UCSC Genome Browser custom track) |
Alignm length: | 524 |
Alignm identity: | 340 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 51, 313 |
Conread position: | 310-598 |
Cow position: | chr16:18499722-18500014 (view UCSC Genome Browser custom track) |
Alignm length: | 301 |
Alignm identity: | 225 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 17 |
Conread position: | 341-778 |
Cow position: | chr16:10203837-10204266 (view UCSC Genome Browser custom track) |
Alignm length: | 447 |
Alignm identity: | 315 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 23 |
Conread position: | 341-783 |
Cow position: | chr16:5483916-5483466 (view UCSC Genome Browser custom track) |
Alignm length: | 456 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 23 |
Conread position: | 341-788 |
Cow position: | chr16:15492301-15491847 (view UCSC Genome Browser custom track) |
Alignm length: | 461 |
Alignm identity: | 326 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 20 |
Conread position: | 341-790 |
Cow position: | chr16:407439-407895 (view UCSC Genome Browser custom track) |
Alignm length: | 464 |
Alignm identity: | 319 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 19 |
Conread position: | 341-790 |
Cow position: | chr16:2727696-2728177 (view UCSC Genome Browser custom track) |
Alignm length: | 488 |
Alignm identity: | 328 |
Alignm E-value: | 9.99967e-42 |
Alignm gaps (pig, cow): | 7, 19 |
Conread position: | 341-790 |
Cow position: | chr16:12538332-12538787 (view UCSC Genome Browser custom track) |
Alignm length: | 463 |
Alignm identity: | 325 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 23 |
Conread position: | 341-790 |
Cow position: | chr16:14666236-14666693 (view UCSC Genome Browser custom track) |
Alignm length: | 463 |
Alignm identity: | 326 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 23 |
Conread position: | 341-790 |
Cow position: | chr16:23252914-23253366 (view UCSC Genome Browser custom track) |
Alignm length: | 463 |
Alignm identity: | 328 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 23 |
Conread position: | 341-790 |
Cow position: | chr16:25341559-25341106 (view UCSC Genome Browser custom track) |
Alignm length: | 460 |
Alignm identity: | 325 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 38 |
Conread position: | 341-790 |
Cow position: | chr16:25441217-25440756 (view UCSC Genome Browser custom track) |
Alignm length: | 470 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 23 |
Conread position: | 341-790 |
Cow position: | chr16:25457872-25458333 (view UCSC Genome Browser custom track) |
Alignm length: | 470 |
Alignm identity: | 324 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 23 |
Conread position: | 341-790 |
Cow position: | chr16:26663342-26662885 (view UCSC Genome Browser custom track) |
Alignm length: | 464 |
Alignm identity: | 333 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 23 |
Conread position: | 341-790 |
Cow position: | chr16:34529913-34529463 (view UCSC Genome Browser custom track) |
Alignm length: | 459 |
Alignm identity: | 331 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 36 |
Conread position: | 342-566 |
Cow position: | chr16:30048088-30047857 (view UCSC Genome Browser custom track) |
Alignm length: | 233 |
Alignm identity: | 160 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 34, 203 |
Conread position: | 343-782 |
Cow position: | chr16:51686028-51685578 (view UCSC Genome Browser custom track) |
Alignm length: | 457 |
Alignm identity: | 310 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 7 |
Conread position: | 347-790 |
Cow position: | chr16:8816518-8816968 (view UCSC Genome Browser custom track) |
Alignm length: | 456 |
Alignm identity: | 321 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 149, 16 |
Conread position: | 350-790 |
Cow position: | chr16:2411383-2411832 (view UCSC Genome Browser custom track) |
Alignm length: | 455 |
Alignm identity: | 318 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 224 |
Conread position: | 353-790 |
Cow position: | chr16:23982893-23982449 (view UCSC Genome Browser custom track) |
Alignm length: | 449 |
Alignm identity: | 320 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 48 |
Conread position: | 371-532 |
Cow position: | chr16:25153287-25153128 (view UCSC Genome Browser custom track) |
Alignm length: | 162 |
Alignm identity: | 131 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 125, 0 |
Conread position: | 371-694 |
Cow position: | chr16:29983001-29982681 (view UCSC Genome Browser custom track) |
Alignm length: | 328 |
Alignm identity: | 213 |
Alignm E-value: | 3e-28 |
Alignm gaps (pig, cow): | 23, 89 |
Conread position: | 371-790 |
Cow position: | chr16:28438222-28438647 (view UCSC Genome Browser custom track) |
Alignm length: | 433 |
Alignm identity: | 269 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 43, 212 |
Conread position: | 371-791 |
Cow position: | chr16:11052724-11052304 (view UCSC Genome Browser custom track) |
Alignm length: | 432 |
Alignm identity: | 318 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 105, 203 |
Conread position: | 372-782 |
Cow position: | chr16:41560215-41559817 (view UCSC Genome Browser custom track) |
Alignm length: | 419 |
Alignm identity: | 278 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 12, 62 |
Conread position: | 376-488 |
Cow position: | chr16:29675820-29675932 (view UCSC Genome Browser custom track) |
Alignm length: | 113 |
Alignm identity: | 95 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 376-681 |
Cow position: | chr16:19713330-19713639 (view UCSC Genome Browser custom track) |
Alignm length: | 317 |
Alignm identity: | 246 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 120, 105 |
Conread position: | 376-789 |
Cow position: | chr16:56551679-56551267 (view UCSC Genome Browser custom track) |
Alignm length: | 421 |
Alignm identity: | 305 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 176, 164 |
Conread position: | 376-790 |
Cow position: | chr16:6548965-6549384 (view UCSC Genome Browser custom track) |
Alignm length: | 425 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 119, 200 |
Conread position: | 376-790 |
Cow position: | chr16:25085180-25084760 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 317 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 120, 207 |
Conread position: | 376-790 |
Cow position: | chr16:36282956-36282538 (view UCSC Genome Browser custom track) |
Alignm length: | 425 |
Alignm identity: | 305 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 160, 129 |
Conread position: | 376-791 |
Cow position: | chr16:7906178-7905779 (view UCSC Genome Browser custom track) |
Alignm length: | 423 |
Alignm identity: | 303 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 121, 205 |
Conread position: | 376-791 |
Cow position: | chr16:10808709-10808299 (view UCSC Genome Browser custom track) |
Alignm length: | 423 |
Alignm identity: | 312 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 202 |
Conread position: | 376-791 |
Cow position: | chr16:20254752-20255174 (view UCSC Genome Browser custom track) |
Alignm length: | 427 |
Alignm identity: | 321 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 120, 200 |
Conread position: | 376-791 |
Cow position: | chr16:39821189-39820771 (view UCSC Genome Browser custom track) |
Alignm length: | 422 |
Alignm identity: | 304 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 127, 198 |
Conread position: | 377-598 |
Cow position: | chr16:31832190-31831963 (view UCSC Genome Browser custom track) |
Alignm length: | 228 |
Alignm identity: | 145 |
Alignm E-value: | 1e-39 |
Alignm gaps (pig, cow): | 101, 0 |
Conread position: | 377-680 |
Cow position: | chr16:53045912-53045603 (view UCSC Genome Browser custom track) |
Alignm length: | 310 |
Alignm identity: | 200 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 122, 0 |
Conread position: | 377-782 |
Cow position: | chr16:29046580-29046166 (view UCSC Genome Browser custom track) |
Alignm length: | 418 |
Alignm identity: | 297 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 119, 199 |
Conread position: | 377-783 |
Cow position: | chr16:25188200-25187786 (view UCSC Genome Browser custom track) |
Alignm length: | 418 |
Alignm identity: | 316 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 119, 198 |
Conread position: | 377-783 |
Cow position: | chr16:43897713-43898124 (view UCSC Genome Browser custom track) |
Alignm length: | 419 |
Alignm identity: | 292 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 118, 56 |
Conread position: | 377-790 |
Cow position: | chr16:836587-836166 (view UCSC Genome Browser custom track) |
Alignm length: | 426 |
Alignm identity: | 307 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 119, 199 |
Conread position: | 377-790 |
Cow position: | chr16:1567896-1568316 (view UCSC Genome Browser custom track) |
Alignm length: | 426 |
Alignm identity: | 305 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 199 |
Conread position: | 377-790 |
Cow position: | chr16:2239182-2239596 (view UCSC Genome Browser custom track) |
Alignm length: | 427 |
Alignm identity: | 299 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 114, 31 |
Conread position: | 377-790 |
Cow position: | chr16:28471544-28471958 (view UCSC Genome Browser custom track) |
Alignm length: | 425 |
Alignm identity: | 290 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 118, 9 |
Conread position: | 377-791 |
Cow position: | chr16:32296-31884 (view UCSC Genome Browser custom track) |
Alignm length: | 421 |
Alignm identity: | 309 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 124, 197 |
Conread position: | 377-791 |
Cow position: | chr16:5661408-5660997 (view UCSC Genome Browser custom track) |
Alignm length: | 421 |
Alignm identity: | 309 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 119, 199 |
Conread position: | 377-791 |
Cow position: | chr16:6943190-6942759 (view UCSC Genome Browser custom track) |
Alignm length: | 435 |
Alignm identity: | 314 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 119, 207 |
Conread position: | 377-791 |
Cow position: | chr16:28170805-28171222 (view UCSC Genome Browser custom track) |
Alignm length: | 424 |
Alignm identity: | 300 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 119, 149 |
Conread position: | 378-611 |
Cow position: | chr16:41757891-41758127 (view UCSC Genome Browser custom track) |
Alignm length: | 238 |
Alignm identity: | 158 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 123, 197 |
Conread position: | 378-666 |
Cow position: | chr16:33611520-33611814 (view UCSC Genome Browser custom track) |
Alignm length: | 302 |
Alignm identity: | 207 |
Alignm E-value: | 3e-29 |
Alignm gaps (pig, cow): | 93, 152 |
Conread position: | 378-749 |
Cow position: | chr16:16030341-16029965 (view UCSC Genome Browser custom track) |
Alignm length: | 383 |
Alignm identity: | 246 |
Alignm E-value: | 3e-29 |
Alignm gaps (pig, cow): | 116, 83 |
Conread position: | 378-784 |
Cow position: | chr16:24154887-24155298 (view UCSC Genome Browser custom track) |
Alignm length: | 415 |
Alignm identity: | 267 |
Alignm E-value: | 8e-38 |
Alignm gaps (pig, cow): | 119, 201 |
Conread position: | 378-790 |
Cow position: | chr16:31592350-31592769 (view UCSC Genome Browser custom track) |
Alignm length: | 427 |
Alignm identity: | 295 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 55 |
Conread position: | 378-791 |
Cow position: | chr16:36361805-36362213 (view UCSC Genome Browser custom track) |
Alignm length: | 425 |
Alignm identity: | 317 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 94, 143 |
Conread position: | 381-783 |
Cow position: | chr16:5919037-5918629 (view UCSC Genome Browser custom track) |
Alignm length: | 414 |
Alignm identity: | 305 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 115, 195 |
Conread position: | 383-661 |
Cow position: | chr16:9777637-9777357 (view UCSC Genome Browser custom track) |
Alignm length: | 286 |
Alignm identity: | 212 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 110, 195 |
Conread position: | 383-783 |
Cow position: | chr16:2483590-2483995 (view UCSC Genome Browser custom track) |
Alignm length: | 410 |
Alignm identity: | 290 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 111, 194 |
Conread position: | 383-790 |
Cow position: | chr16:15184355-15183940 (view UCSC Genome Browser custom track) |
Alignm length: | 422 |
Alignm identity: | 304 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 112, 169 |
Conread position: | 383-790 |
Cow position: | chr16:15566296-15565888 (view UCSC Genome Browser custom track) |
Alignm length: | 415 |
Alignm identity: | 299 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 229, 69 |
Conread position: | 384-495 |
Cow position: | chr16:4302777-4302888 (view UCSC Genome Browser custom track) |
Alignm length: | 112 |
Alignm identity: | 91 |
Alignm E-value: | 6e-24 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 387-790 |
Cow position: | chr16:27734253-27734667 (view UCSC Genome Browser custom track) |
Alignm length: | 418 |
Alignm identity: | 300 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 5, 191 |
Conread position: | 390-729 |
Cow position: | chr16:10437788-10437440 (view UCSC Genome Browser custom track) |
Alignm length: | 354 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 109, 193 |
Conread position: | 390-790 |
Cow position: | chr16:40296633-40297038 (view UCSC Genome Browser custom track) |
Alignm length: | 409 |
Alignm identity: | 288 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 107, 186 |
Conread position: | 405-783 |
Cow position: | chr16:42050857-42051227 (view UCSC Genome Browser custom track) |
Alignm length: | 388 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 91, 135 |
Conread position: | 430-791 |
Cow position: | chr16:36232110-36232469 (view UCSC Genome Browser custom track) |
Alignm length: | 367 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 181, 141 |
Conread position: | 440-791 |
Cow position: | chr16:11111447-11111801 (view UCSC Genome Browser custom track) |
Alignm length: | 365 |
Alignm identity: | 233 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 48, 142 |
Conread position: | 496-782 |
Cow position: | chr16:16276073-16276360 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 204 |
Alignm E-value: | 4e-32 |
Alignm gaps (pig, cow): | 116, 24 |
Conread position: | 500-791 |
Cow position: | chr16:4303047-4303334 (view UCSC Genome Browser custom track) |
Alignm length: | 296 |
Alignm identity: | 204 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 108, 64 |
Conread position: | 528-791 |
Cow position: | chr16:54647719-54647463 (view UCSC Genome Browser custom track) |
Alignm length: | 265 |
Alignm identity: | 172 |
Alignm E-value: | 4e-21 |
Alignm gaps (pig, cow): | 85, 46 |
Conread position: | 534-790 |
Cow position: | chr16:18687728-18687982 (view UCSC Genome Browser custom track) |
Alignm length: | 261 |
Alignm identity: | 182 |
Alignm E-value: | 1e-30 |
Alignm gaps (pig, cow): | 7, 40 |
Conread position: | 581-791 |
Cow position: | chr16:29675960-29676169 (view UCSC Genome Browser custom track) |
Alignm length: | 216 |
Alignm identity: | 155 |
Alignm E-value: | 8e-27 |
Alignm gaps (pig, cow): | 69, 32 |
Show alignments to all cow chromosomes.