Cow genome map
| Conread name: | Ss1.1-Lym1-jns97_C07.f.5 |
| Conread position: | 152-791 |
| Cow position: | chr17:14325147-14325781 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 84 |
| Conread position: | 154-524 |
| Cow position: | chr17:36987336-36987687 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 90 |
| Conread position: | 221-581 |
| Cow position: | chr17:15371345-15370975 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 103 |
| Conread position: | 274-783 |
| Cow position: | chr17:6001777-6002290 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 337 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 66, 31 |
| Conread position: | 278-782 |
| Cow position: | chr17:4081876-4081370 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 54 |
| Conread position: | 278-791 |
| Cow position: | chr17:20401898-20401397 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 11 |
| Conread position: | 279-680 |
| Cow position: | chr17:42264738-42264329 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 96, 53 |
| Conread position: | 279-791 |
| Cow position: | chr17:4295581-4295080 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 40 |
| Conread position: | 297-591 |
| Cow position: | chr17:2147380-2147092 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 79, 29 |
| Conread position: | 302-791 |
| Cow position: | chr17:2174092-2173592 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 38 |
| Conread position: | 335-662 |
| Cow position: | chr17:31199478-31199795 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 11, 91 |
| Conread position: | 335-783 |
| Cow position: | chr17:18185359-18185803 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 28 |
| Conread position: | 335-791 |
| Cow position: | chr17:16890302-16889838 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 49 |
| Conread position: | 341-589 |
| Cow position: | chr17:3709040-3709284 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 160, 9 |
| Conread position: | 341-608 |
| Cow position: | chr17:602263-602523 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 17, 165 |
| Conread position: | 341-634 |
| Cow position: | chr17:40804988-40804690 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 22 |
| Conread position: | 341-688 |
| Cow position: | chr17:2579786-2579449 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 7, 22 |
| Conread position: | 341-790 |
| Cow position: | chr17:14894324-14893875 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 341-791 |
| Cow position: | chr17:20087574-20088017 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 77 |
| Conread position: | 341-791 |
| Cow position: | chr17:22429318-22429769 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 22 |
| Conread position: | 343-791 |
| Cow position: | chr17:152299-152757 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 159 |
| Conread position: | 346-790 |
| Cow position: | chr17:3642672-3643122 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 13 |
| Conread position: | 348-487 |
| Cow position: | chr17:14040885-14041019 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 350-531 |
| Cow position: | chr17:22557785-22557599 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 97, 117 |
| Conread position: | 350-783 |
| Cow position: | chr17:13929829-13929389 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 13 |
| Conread position: | 351-569 |
| Cow position: | chr17:1283545-1283766 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 145, 12 |
| Conread position: | 351-790 |
| Cow position: | chr17:6260004-6259559 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 12 |
| Conread position: | 351-791 |
| Cow position: | chr17:23856874-23857321 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 12 |
| Conread position: | 363-791 |
| Cow position: | chr17:20183085-20183514 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 6 |
| Conread position: | 376-774 |
| Cow position: | chr17:18026620-18027027 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 200 |
| Conread position: | 376-783 |
| Cow position: | chr17:2287523-2287110 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 207 |
| Conread position: | 376-790 |
| Cow position: | chr17:1880231-1879806 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 174 |
| Conread position: | 376-790 |
| Cow position: | chr17:4060236-4059822 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 63 |
| Conread position: | 376-791 |
| Cow position: | chr17:1947106-1946691 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 61 |
| Conread position: | 376-791 |
| Cow position: | chr17:22132365-22131947 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 204 |
| Conread position: | 376-791 |
| Cow position: | chr17:27345935-27345518 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 58 |
| Conread position: | 376-791 |
| Cow position: | chr17:35592351-35591928 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 201 |
| Conread position: | 377-527 |
| Cow position: | chr17:34156264-34156109 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 377-536 |
| Cow position: | chr17:43952427-43952590 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 119, 149 |
| Conread position: | 377-611 |
| Cow position: | chr17:181499-181261 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 199 |
| Conread position: | 377-748 |
| Cow position: | chr17:23324318-23324698 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 199 |
| Conread position: | 377-783 |
| Cow position: | chr17:228172-228580 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 100 |
| Conread position: | 377-783 |
| Cow position: | chr17:18103549-18103959 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 59 |
| Conread position: | 377-783 |
| Cow position: | chr17:20665590-20666005 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 199 |
| Conread position: | 377-784 |
| Cow position: | chr17:44852797-44853214 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 33 |
| Conread position: | 377-790 |
| Cow position: | chr17:15850533-15850112 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 200 |
| Conread position: | 377-790 |
| Cow position: | chr17:19269230-19269652 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 199 |
| Conread position: | 377-790 |
| Cow position: | chr17:25737799-25737377 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 196 |
| Conread position: | 377-791 |
| Cow position: | chr17:1382678-1383101 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 199 |
| Conread position: | 377-791 |
| Cow position: | chr17:2262238-2261823 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 31 |
| Conread position: | 377-791 |
| Cow position: | chr17:6089025-6089448 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 199 |
| Conread position: | 377-791 |
| Cow position: | chr17:8209242-8208820 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 199 |
| Conread position: | 377-791 |
| Cow position: | chr17:15143231-15143656 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 199 |
| Conread position: | 377-791 |
| Cow position: | chr17:15156828-15157248 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 138 |
| Conread position: | 377-791 |
| Cow position: | chr17:15435927-15435504 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 199 |
| Conread position: | 377-791 |
| Cow position: | chr17:24634090-24633667 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 199 |
| Conread position: | 378-783 |
| Cow position: | chr17:43988668-43988256 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 165 |
| Conread position: | 379-536 |
| Cow position: | chr17:31767905-31768067 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 379-791 |
| Cow position: | chr17:2248450-2248868 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 191 |
| Conread position: | 380-791 |
| Cow position: | chr17:9653323-9653743 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 196 |
| Conread position: | 383-783 |
| Cow position: | chr17:11087594-11088003 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 193 |
| Conread position: | 383-790 |
| Cow position: | chr17:13856639-13857055 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 193 |
| Conread position: | 384-535 |
| Cow position: | chr17:15323374-15323219 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 109, 78 |
| Conread position: | 384-791 |
| Cow position: | chr17:14216894-14217311 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 190 |
| Conread position: | 393-495 |
| Cow position: | chr17:602803-602701 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 393-763 |
| Cow position: | chr17:2556242-2555864 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 182 |
| Conread position: | 396-790 |
| Cow position: | chr17:16859451-16859842 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 40 |
| Conread position: | 405-790 |
| Cow position: | chr17:250047-249629 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 290 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 91, 138 |
| Conread position: | 418-590 |
| Cow position: | chr17:26205712-26205888 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 81, 158 |
| Conread position: | 430-791 |
| Cow position: | chr17:39933738-39933396 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 251 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 91, 143 |
| Conread position: | 452-791 |
| Cow position: | chr17:24781109-24780761 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 124 |
| Conread position: | 499-791 |
| Cow position: | chr17:22160925-22160629 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 212 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 114, 74 |
| Conread position: | 594-790 |
| Cow position: | chr17:28110002-28109800 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 20, 119 |
Show alignments to all cow chromosomes.