Cow genome map
| Conread name: | Ss1.1-Lym1-jns97_C07.f.5 |
| Conread position: | 154-305 |
| Cow position: | chr20:8215708-8215554 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 154-791 |
| Cow position: | chr20:18315092-18315702 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 22 |
| Conread position: | 259-688 |
| Cow position: | chr20:8993207-8993649 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 70, 212 |
| Conread position: | 278-791 |
| Cow position: | chr20:31378478-31379000 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 343 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 23, 57 |
| Conread position: | 285-783 |
| Cow position: | chr20:22206938-22206438 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 26 |
| Conread position: | 299-480 |
| Cow position: | chr20:5465638-5465458 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 67, 28 |
| Conread position: | 316-791 |
| Cow position: | chr20:9953617-9954101 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 22 |
| Conread position: | 335-790 |
| Cow position: | chr20:15065109-15064652 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 6 |
| Conread position: | 337-789 |
| Cow position: | chr20:3271048-3270595 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 27 |
| Conread position: | 341-764 |
| Cow position: | chr20:13679718-13680147 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 30 |
| Conread position: | 341-783 |
| Cow position: | chr20:8003886-8004335 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 341-790 |
| Cow position: | chr20:5535277-5534822 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 341-790 |
| Cow position: | chr20:13763244-13762785 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 341-790 |
| Cow position: | chr20:15292350-15291901 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 341-790 |
| Cow position: | chr20:23469326-23469776 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 341-790 |
| Cow position: | chr20:23799225-23798765 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 341-790 |
| Cow position: | chr20:27869537-27869080 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 341-790 |
| Cow position: | chr20:28161110-28160665 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 341-790 |
| Cow position: | chr20:28565256-28565713 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 22 |
| Conread position: | 341-790 |
| Cow position: | chr20:30684660-30684222 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 346-790 |
| Cow position: | chr20:21914661-21914209 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 16 |
| Conread position: | 351-789 |
| Cow position: | chr20:15947052-15947509 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 22 |
| Conread position: | 351-791 |
| Cow position: | chr20:8313113-8313554 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 14 |
| Conread position: | 353-790 |
| Cow position: | chr20:12438431-12438878 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 224 |
| Conread position: | 356-789 |
| Cow position: | chr20:7116143-7116585 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 220 |
| Conread position: | 371-608 |
| Cow position: | chr20:35104319-35104562 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 125, 214 |
| Conread position: | 371-681 |
| Cow position: | chr20:20904903-20905208 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 242, 33 |
| Conread position: | 374-712 |
| Cow position: | chr20:3684180-3684524 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 195 |
| Conread position: | 375-498 |
| Cow position: | chr20:21393900-21393777 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 376-764 |
| Cow position: | chr20:24614841-24614448 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 198 |
| Conread position: | 376-772 |
| Cow position: | chr20:3033367-3032965 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 200 |
| Conread position: | 376-788 |
| Cow position: | chr20:3251829-3252248 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 94 |
| Conread position: | 376-791 |
| Cow position: | chr20:5484496-5484074 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 201 |
| Conread position: | 377-496 |
| Cow position: | chr20:19495288-19495169 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 377-571 |
| Cow position: | chr20:10845817-10846013 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 119, 165 |
| Conread position: | 377-781 |
| Cow position: | chr20:25850686-25851100 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 199 |
| Conread position: | 377-781 |
| Cow position: | chr20:25961408-25960995 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 199 |
| Conread position: | 377-782 |
| Cow position: | chr20:15097572-15097988 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 189 |
| Conread position: | 377-791 |
| Cow position: | chr20:823072-822649 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 199 |
| Conread position: | 377-791 |
| Cow position: | chr20:5560410-5560833 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 199 |
| Conread position: | 377-791 |
| Cow position: | chr20:19438245-19437840 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 56 |
| Conread position: | 378-790 |
| Cow position: | chr20:35119873-35119457 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 25 |
| Conread position: | 383-732 |
| Cow position: | chr20:29948798-29948440 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 193 |
| Conread position: | 387-782 |
| Cow position: | chr20:13664921-13665311 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 114, 24 |
| Conread position: | 498-791 |
| Cow position: | chr20:11678931-11679228 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 212 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 115, 75 |
| Conread position: | 535-790 |
| Cow position: | chr20:21393706-21393453 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 78, 38 |
| Conread position: | 578-791 |
| Cow position: | chr20:4799551-4799769 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 35, 56 |
Show alignments to all cow chromosomes.