Cow genome map
| Conread name: | Ss1.1-Lym1-jns97_C07.f.5 |
| Conread position: | 48-791 |
| Cow position: | chr21:9892371-9891604 (view UCSC Genome Browser custom track) |
| Alignm length: | 789 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 35 |
| Conread position: | 112-791 |
| Cow position: | chr21:23812567-23811877 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 51 |
| Conread position: | 154-535 |
| Cow position: | chr21:9870389-9870012 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 264 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 25, 92 |
| Conread position: | 154-543 |
| Cow position: | chr21:359686-359287 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 176 |
| Conread position: | 154-687 |
| Cow position: | chr21:29418-28925 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 54 |
| Conread position: | 155-790 |
| Cow position: | chr21:4184153-4183526 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 88 |
| Conread position: | 186-555 |
| Cow position: | chr21:30226629-30226260 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 53 |
| Conread position: | 188-784 |
| Cow position: | chr21:2540793-2541406 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 138 |
| Conread position: | 308-790 |
| Cow position: | chr21:2416717-2416238 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 36 |
| Conread position: | 335-494 |
| Cow position: | chr21:2716254-2716411 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 13, 40 |
| Conread position: | 341-534 |
| Cow position: | chr21:33251965-33251768 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 7, 24 |
| Conread position: | 341-597 |
| Cow position: | chr21:35144215-35143968 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 341-666 |
| Cow position: | chr21:1191622-1191295 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 341-667 |
| Cow position: | chr21:2502348-2502025 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 239 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 8, 30 |
| Conread position: | 341-775 |
| Cow position: | chr21:30599467-30599903 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 341-782 |
| Cow position: | chr21:27282845-27282397 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 305 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 7, 24 |
| Conread position: | 341-783 |
| Cow position: | chr21:10567127-10566683 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 341-790 |
| Cow position: | chr21:146381-145921 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 341-790 |
| Cow position: | chr21:2883290-2883746 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 35 |
| Conread position: | 341-790 |
| Cow position: | chr21:3779224-3778769 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 341-790 |
| Cow position: | chr21:31559197-31559652 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 341-791 |
| Cow position: | chr21:8677899-8678359 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 238 |
| Conread position: | 350-783 |
| Cow position: | chr21:1291742-1292168 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 13 |
| Conread position: | 351-519 |
| Cow position: | chr21:2674164-2674334 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 145, 12 |
| Conread position: | 351-534 |
| Cow position: | chr21:34258541-34258728 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 118, 12 |
| Conread position: | 351-684 |
| Cow position: | chr21:3797923-3798263 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 12 |
| Conread position: | 351-791 |
| Cow position: | chr21:2788545-2788990 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 11 |
| Conread position: | 351-791 |
| Cow position: | chr21:34293463-34293019 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 12 |
| Conread position: | 353-783 |
| Cow position: | chr21:4457275-4456836 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 224 |
| Conread position: | 353-790 |
| Cow position: | chr21:10850526-10850082 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 12 |
| Conread position: | 356-600 |
| Cow position: | chr21:18819984-18820231 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 89 |
| Conread position: | 356-790 |
| Cow position: | chr21:4589545-4589988 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 114 |
| Conread position: | 371-676 |
| Cow position: | chr21:4087232-4086924 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 126, 189 |
| Conread position: | 371-784 |
| Cow position: | chr21:36715058-36714641 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 125, 90 |
| Conread position: | 376-535 |
| Cow position: | chr21:3615736-3615573 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 120, 82 |
| Conread position: | 376-791 |
| Cow position: | chr21:2529703-2530125 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 91 |
| Conread position: | 376-791 |
| Cow position: | chr21:13123581-13123998 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 149 |
| Conread position: | 376-791 |
| Cow position: | chr21:35596791-35596369 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 82 |
| Conread position: | 377-619 |
| Cow position: | chr21:26650465-26650218 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 199 |
| Conread position: | 377-783 |
| Cow position: | chr21:30562226-30561811 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 199 |
| Conread position: | 377-790 |
| Cow position: | chr21:7267113-7267539 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 51 |
| Conread position: | 377-791 |
| Cow position: | chr21:2476117-2476509 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 76 |
| Conread position: | 377-791 |
| Cow position: | chr21:2511075-2510653 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 199 |
| Conread position: | 377-791 |
| Cow position: | chr21:4091073-4090652 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 199 |
| Conread position: | 377-791 |
| Cow position: | chr21:6339990-6339567 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 199 |
| Conread position: | 377-791 |
| Cow position: | chr21:11453232-11453655 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 199 |
| Conread position: | 377-791 |
| Cow position: | chr21:11506020-11505588 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 208 |
| Conread position: | 377-791 |
| Cow position: | chr21:26638041-26638462 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 199 |
| Conread position: | 377-791 |
| Cow position: | chr21:39425487-39425064 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 199 |
| Conread position: | 377-791 |
| Cow position: | chr21:46916012-46915588 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 199 |
| Conread position: | 378-783 |
| Cow position: | chr21:3194802-3194405 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 75, 100 |
| Conread position: | 378-783 |
| Cow position: | chr21:21914707-21914294 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 270 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 123, 55 |
| Conread position: | 378-791 |
| Cow position: | chr21:4077260-4076846 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 80 |
| Conread position: | 378-791 |
| Cow position: | chr21:12055578-12055999 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 198 |
| Conread position: | 378-791 |
| Cow position: | chr21:20744346-20744750 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 51 |
| Conread position: | 378-791 |
| Cow position: | chr21:37045333-37044914 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 198 |
| Conread position: | 383-790 |
| Cow position: | chr21:48116519-48116110 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 92 |
| Conread position: | 385-743 |
| Cow position: | chr21:40271261-40271628 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 191 |
| Conread position: | 389-694 |
| Cow position: | chr21:30165070-30165380 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 107, 187 |
| Conread position: | 404-790 |
| Cow position: | chr21:47948505-47948111 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 171 |
| Conread position: | 412-783 |
| Cow position: | chr21:992640-993007 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 89, 164 |
| Conread position: | 418-791 |
| Cow position: | chr21:3426868-3426486 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 160 |
| Conread position: | 423-687 |
| Cow position: | chr21:47939849-47939581 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 196 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 188, 148 |
| Conread position: | 440-790 |
| Cow position: | chr21:2769114-2769459 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 252 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 167, 42 |
| Conread position: | 441-791 |
| Cow position: | chr21:4222333-4222686 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 74 |
| Conread position: | 520-791 |
| Cow position: | chr21:34258954-34259218 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 187, 53 |
| Conread position: | 542-791 |
| Cow position: | chr21:2716428-2716680 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 71, 92 |
| Conread position: | 558-791 |
| Cow position: | chr21:3615531-3615293 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 55, 76 |
| Conread position: | 579-791 |
| Cow position: | chr21:26818803-26819020 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 34, 55 |
Show alignments to all cow chromosomes.