Cow genome map

Conread name: Ss1.1-Lym1-jns97_C07.f.5

Conread position: 32-122
Cow position: chr22:23853901-23853811 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 78
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 32-122
Cow position: chr22:35907156-35907246 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 80
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 32-122
Cow position: chr22:44610149-44610058 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 79
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 125-680
Cow position: chr22:41419189-41419755 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 106

Conread position: 151-365
Cow position: chr22:35907244-35907447 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 30, 123

Conread position: 152-788
Cow position: chr22:3306249-3306901 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 177

Conread position: 154-307
Cow position: chr22:1322277-1322131 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 25, 88

Conread position: 154-561
Cow position: chr22:23853810-23853393 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 169

Conread position: 154-566
Cow position: chr22:1283177-1283593 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 171

Conread position: 154-782
Cow position: chr22:44610057-44609442 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 89

Conread position: 154-792
Cow position: chr22:13917984-13917330 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 175

Conread position: 155-783
Cow position: chr22:8135731-8136360 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 32

Conread position: 187-371
Cow position: chr22:46548016-46547834 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 138
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 137, 0

Conread position: 192-790
Cow position: chr22:1270109-1270681 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 309, 43

Conread position: 253-792
Cow position: chr22:11031341-11030787 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 86

Conread position: 265-791
Cow position: chr22:6503309-6503836 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 62

Conread position: 285-676
Cow position: chr22:9273785-9273382 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 257
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 55, 120

Conread position: 287-791
Cow position: chr22:7277863-7277351 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 45

Conread position: 298-790
Cow position: chr22:1321921-1321441 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 35

Conread position: 301-661
Cow position: chr22:310105-309742 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 38

Conread position: 302-517
Cow position: chr22:301711-301927 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 151
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 65, 32

Conread position: 303-719
Cow position: chr22:15956380-15956795 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 282
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 64, 24

Conread position: 316-741
Cow position: chr22:1048718-1048289 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 19

Conread position: 334-782
Cow position: chr22:34607357-34606899 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 298
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 29, 82

Conread position: 334-790
Cow position: chr22:5932709-5933155 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 7

Conread position: 335-791
Cow position: chr22:13674877-13675331 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 295
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 11, 86

Conread position: 340-471
Cow position: chr22:37072790-37072921 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 37, 113

Conread position: 340-790
Cow position: chr22:42991459-42991001 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 24

Conread position: 341-790
Cow position: chr22:560419-560870 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 23

Conread position: 341-790
Cow position: chr22:18816100-18816552 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 25

Conread position: 341-790
Cow position: chr22:19143413-19143870 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 23

Conread position: 341-790
Cow position: chr22:31313625-31313170 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 23

Conread position: 341-790
Cow position: chr22:31334752-31335204 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 23

Conread position: 341-790
Cow position: chr22:34168617-34168161 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 23

Conread position: 341-790
Cow position: chr22:36861244-36861701 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 23

Conread position: 341-790
Cow position: chr22:39469237-39469690 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 23

Conread position: 342-469
Cow position: chr22:13773181-13773055 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 104
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 76, 0

Conread position: 347-783
Cow position: chr22:17328460-17328903 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 15

Conread position: 356-742
Cow position: chr22:292897-293280 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 260
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 20, 144

Conread position: 356-749
Cow position: chr22:21589597-21589197 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 218

Conread position: 371-777
Cow position: chr22:44475491-44475097 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 270
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 117, 58

Conread position: 371-783
Cow position: chr22:32347732-32348142 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 283
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 9, 99

Conread position: 371-791
Cow position: chr22:298084-298504 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 280
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 125, 120

Conread position: 373-790
Cow position: chr22:15851574-15851163 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 61

Conread position: 374-789
Cow position: chr22:34598914-34598505 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 16

Conread position: 374-791
Cow position: chr22:5233051-5233477 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 202

Conread position: 375-566
Cow position: chr22:38937830-38938026 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 153
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 121, 0

Conread position: 376-463
Cow position: chr22:24950348-24950261 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 80
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 376-468
Cow position: chr22:31936746-31936654 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 79
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 376-729
Cow position: chr22:42771707-42771365 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 254
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 120, 200

Conread position: 376-769
Cow position: chr22:5308356-5307954 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 202

Conread position: 376-775
Cow position: chr22:36533489-36533893 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 202

Conread position: 376-789
Cow position: chr22:117590-117985 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 200

Conread position: 376-790
Cow position: chr22:525441-525847 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 202

Conread position: 376-790
Cow position: chr22:5672989-5672566 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 200

Conread position: 376-791
Cow position: chr22:157654-158074 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 197

Conread position: 376-791
Cow position: chr22:1319649-1319225 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 200

Conread position: 376-791
Cow position: chr22:36737011-36736591 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 179

Conread position: 376-791
Cow position: chr22:39881924-39882348 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 200

Conread position: 376-791
Cow position: chr22:46853594-46853170 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 108

Conread position: 376-792
Cow position: chr22:16200726-16200313 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 201

Conread position: 377-499
Cow position: chr22:1860990-1860868 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 103
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 377-499
Cow position: chr22:16814137-16814015 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 104
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 377-524
Cow position: chr22:37266224-37266072 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 120
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 120, 0

Conread position: 377-593
Cow position: chr22:18027530-18027311 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 174
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 119, 160

Conread position: 377-713
Cow position: chr22:6020913-6020568 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 199

Conread position: 377-729
Cow position: chr22:46581337-46581695 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 163

Conread position: 377-744
Cow position: chr22:10909582-10909963 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 194

Conread position: 377-769
Cow position: chr22:20240591-20240991 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 72

Conread position: 377-772
Cow position: chr22:15313701-15314101 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 263

Conread position: 377-783
Cow position: chr22:27284282-27283885 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 166

Conread position: 377-783
Cow position: chr22:27309522-27309937 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 199

Conread position: 377-789
Cow position: chr22:46547413-46547834 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 199

Conread position: 377-790
Cow position: chr22:326919-327327 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 129

Conread position: 377-790
Cow position: chr22:44934230-44933809 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 199

Conread position: 377-791
Cow position: chr22:537352-536929 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 199

Conread position: 377-791
Cow position: chr22:1879044-1878620 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 200

Conread position: 377-791
Cow position: chr22:3278105-3278525 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 57

Conread position: 377-791
Cow position: chr22:10546896-10546473 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 199

Conread position: 377-791
Cow position: chr22:35672105-35672527 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 199

Conread position: 377-791
Cow position: chr22:44369375-44369792 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 294
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 46, 93

Conread position: 377-791
Cow position: chr22:44490138-44489715 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 199

Conread position: 379-668
Cow position: chr22:35942961-35943251 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 201
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 117, 78

Conread position: 381-790
Cow position: chr22:37131880-37131479 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 43

Conread position: 382-732
Cow position: chr22:8875233-8874881 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 241
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 119, 70

Conread position: 383-790
Cow position: chr22:36184001-36183588 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 43

Conread position: 384-791
Cow position: chr22:693870-693460 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 192

Conread position: 385-783
Cow position: chr22:44352721-44353111 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 11

Conread position: 397-691
Cow position: chr22:44396681-44396379 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 121

Conread position: 398-555
Cow position: chr22:45879379-45879542 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 135
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 56, 0

Conread position: 406-790
Cow position: chr22:46635492-46635868 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 267
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 61, 70

Conread position: 409-535
Cow position: chr22:8740688-8740814 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 107
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 418-713
Cow position: chr22:32485143-32485446 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 46

Conread position: 423-783
Cow position: chr22:24950035-24949666 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 155

Conread position: 438-739
Cow position: chr22:36580989-36581286 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 203
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 63, 136

Conread position: 443-631
Cow position: chr22:37073028-37073221 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 146
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 53, 112

Conread position: 497-783
Cow position: chr22:27386305-27386595 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 203
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 115, 74

Conread position: 501-663
Cow position: chr22:1860689-1860849 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 111, 72

Conread position: 513-791
Cow position: chr22:37265565-37265282 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 197
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 9, 59

Conread position: 583-791
Cow position: chr22:6985296-6985083 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 30, 51

Show alignments to all cow chromosomes.