Cow genome map
| Conread name: | Ss1.1-Lym1-jns97_C07.f.5 |
| Conread position: | 32-466 |
| Cow position: | chr23:1402262-1402719 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 322 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 57, 33 |
| Conread position: | 172-742 |
| Cow position: | chr23:29474100-29474676 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 7 |
| Conread position: | 262-687 |
| Cow position: | chr23:1327102-1327528 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 73 |
| Conread position: | 271-566 |
| Cow position: | chr23:22875323-22875616 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 83, 64 |
| Conread position: | 276-791 |
| Cow position: | chr23:4752344-4751842 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 334 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 79, 58 |
| Conread position: | 278-791 |
| Cow position: | chr23:38578631-38578120 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 58 |
| Conread position: | 286-598 |
| Cow position: | chr23:16615651-16615970 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 234 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 90, 45 |
| Conread position: | 298-791 |
| Cow position: | chr23:19332077-19332570 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 36 |
| Conread position: | 340-790 |
| Cow position: | chr23:19489829-19489367 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 24 |
| Conread position: | 341-771 |
| Cow position: | chr23:28913679-28913262 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 341-782 |
| Cow position: | chr23:4640338-4640788 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 341-790 |
| Cow position: | chr23:3881419-3881869 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 341-790 |
| Cow position: | chr23:30636015-30636472 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 341-791 |
| Cow position: | chr23:5778800-5779256 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 15 |
| Conread position: | 343-717 |
| Cow position: | chr23:2716671-2716290 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 20 |
| Conread position: | 347-782 |
| Cow position: | chr23:967071-967510 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 16 |
| Conread position: | 347-783 |
| Cow position: | chr23:15525889-15525447 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 16 |
| Conread position: | 350-790 |
| Cow position: | chr23:14965476-14965917 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 13 |
| Conread position: | 350-790 |
| Cow position: | chr23:16616572-16617019 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 15 |
| Conread position: | 351-561 |
| Cow position: | chr23:29452042-29452258 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 88, 24 |
| Conread position: | 351-566 |
| Cow position: | chr23:2765178-2765396 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 175 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 26, 12 |
| Conread position: | 351-790 |
| Cow position: | chr23:4510352-4509930 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 301 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 106, 12 |
| Conread position: | 351-790 |
| Cow position: | chr23:14974289-14974733 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 26 |
| Conread position: | 353-485 |
| Cow position: | chr23:11778764-11778631 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 356-790 |
| Cow position: | chr23:15177344-15176904 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 62 |
| Conread position: | 371-666 |
| Cow position: | chr23:10903794-10903487 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 25, 221 |
| Conread position: | 374-785 |
| Cow position: | chr23:25683810-25684225 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 30 |
| Conread position: | 375-670 |
| Cow position: | chr23:2574788-2574491 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 81 |
| Conread position: | 376-551 |
| Cow position: | chr23:8980069-8980248 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 120, 139 |
| Conread position: | 376-786 |
| Cow position: | chr23:31591550-31591973 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 201 |
| Conread position: | 376-790 |
| Cow position: | chr23:7273883-7273485 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 166 |
| Conread position: | 376-791 |
| Cow position: | chr23:988396-988812 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 191 |
| Conread position: | 376-791 |
| Cow position: | chr23:4277207-4276783 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 201 |
| Conread position: | 377-775 |
| Cow position: | chr23:4434707-4434309 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 64 |
| Conread position: | 377-783 |
| Cow position: | chr23:4360081-4359666 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 199 |
| Conread position: | 377-790 |
| Cow position: | chr23:4888924-4888510 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 102 |
| Conread position: | 377-790 |
| Cow position: | chr23:15219640-15220068 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 200 |
| Conread position: | 377-790 |
| Cow position: | chr23:27399754-27399333 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 72 |
| Conread position: | 377-791 |
| Cow position: | chr23:2312989-2313409 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 197 |
| Conread position: | 377-791 |
| Cow position: | chr23:19950332-19950755 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 111 |
| Conread position: | 377-791 |
| Cow position: | chr23:20302463-20302043 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 24 |
| Conread position: | 377-791 |
| Cow position: | chr23:28217541-28217119 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 199 |
| Conread position: | 377-791 |
| Cow position: | chr23:31447066-31446643 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 199 |
| Conread position: | 383-724 |
| Cow position: | chr23:2757839-2757489 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 182 |
| Conread position: | 383-790 |
| Cow position: | chr23:2026874-2027289 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 193 |
| Conread position: | 383-790 |
| Cow position: | chr23:22147009-22147428 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 18 |
| Conread position: | 383-790 |
| Cow position: | chr23:36031128-36031542 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 193 |
| Conread position: | 386-660 |
| Cow position: | chr23:20155973-20156252 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 192 |
| Conread position: | 388-667 |
| Cow position: | chr23:31594996-31595279 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 188 |
| Conread position: | 403-783 |
| Cow position: | chr23:34175402-34175020 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 62, 26 |
| Conread position: | 405-789 |
| Cow position: | chr23:5874559-5874944 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 38 |
| Conread position: | 405-791 |
| Cow position: | chr23:2523974-2524367 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 171 |
| Conread position: | 423-790 |
| Cow position: | chr23:3013851-3013474 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 153 |
| Conread position: | 427-783 |
| Cow position: | chr23:1024863-1025223 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 255 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 69, 22 |
| Conread position: | 452-790 |
| Cow position: | chr23:4816251-4815902 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 45, 126 |
| Conread position: | 497-791 |
| Cow position: | chr23:2340521-2340233 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 208 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 24, 40 |
| Conread position: | 498-782 |
| Cow position: | chr23:11778595-11778322 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 113, 78 |
Show alignments to all cow chromosomes.