Cow genome map
| Conread name: | Ss1.1-Lym1-jns97_C07.f.5 |
| Conread position: | 53-791 |
| Cow position: | chr24:2636771-2636034 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 620, 25 |
| Conread position: | 154-357 |
| Cow position: | chr24:12206074-12206273 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 26, 33 |
| Conread position: | 154-790 |
| Cow position: | chr24:16648755-16649385 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 153 |
| Conread position: | 154-791 |
| Cow position: | chr24:12797206-12797850 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 121 |
| Conread position: | 154-792 |
| Cow position: | chr24:36559534-36560170 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 21 |
| Conread position: | 278-487 |
| Cow position: | chr24:14333484-14333270 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 278-790 |
| Cow position: | chr24:12568670-12568165 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 347 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 62, 156 |
| Conread position: | 279-789 |
| Cow position: | chr24:1447996-1447476 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 48 |
| Conread position: | 282-783 |
| Cow position: | chr24:36708277-36707773 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 59 |
| Conread position: | 284-791 |
| Cow position: | chr24:35841187-35841698 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 47 |
| Conread position: | 285-667 |
| Cow position: | chr24:7091165-7091551 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 54 |
| Conread position: | 285-790 |
| Cow position: | chr24:6537965-6537466 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 349 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 16, 9 |
| Conread position: | 297-574 |
| Cow position: | chr24:8152583-8152870 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 51, 169 |
| Conread position: | 297-784 |
| Cow position: | chr24:40654798-40654313 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 33 |
| Conread position: | 302-532 |
| Cow position: | chr24:16376934-16376701 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 73, 24 |
| Conread position: | 307-579 |
| Cow position: | chr24:6058793-6058535 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 71, 27 |
| Conread position: | 311-627 |
| Cow position: | chr24:12287987-12288313 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 66, 30 |
| Conread position: | 315-680 |
| Cow position: | chr24:6352583-6352203 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 61, 23 |
| Conread position: | 340-479 |
| Cow position: | chr24:6444656-6444517 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 37, 82 |
| Conread position: | 340-790 |
| Cow position: | chr24:6336058-6335614 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 101 |
| Conread position: | 341-660 |
| Cow position: | chr24:29187655-29187334 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 341-670 |
| Cow position: | chr24:12335403-12335733 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 341-686 |
| Cow position: | chr24:17696606-17696950 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 341-762 |
| Cow position: | chr24:6660229-6660665 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 21 |
| Conread position: | 341-790 |
| Cow position: | chr24:148247-148699 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 341-790 |
| Cow position: | chr24:19833757-19833296 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 349-790 |
| Cow position: | chr24:6145731-6145275 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 14 |
| Conread position: | 350-791 |
| Cow position: | chr24:14585441-14585008 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 227 |
| Conread position: | 351-783 |
| Cow position: | chr24:9091924-9092351 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 12 |
| Conread position: | 353-783 |
| Cow position: | chr24:12237419-12236976 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 40 |
| Conread position: | 374-552 |
| Cow position: | chr24:7061729-7061546 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 152 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 377-486 |
| Cow position: | chr24:43814101-43813992 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 377-551 |
| Cow position: | chr24:5992892-5993071 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 377-783 |
| Cow position: | chr24:6024761-6025173 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 73 |
| Conread position: | 377-783 |
| Cow position: | chr24:8030488-8030073 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 199 |
| Conread position: | 377-790 |
| Cow position: | chr24:12086535-12086113 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 199 |
| Conread position: | 377-791 |
| Cow position: | chr24:6084354-6083931 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 199 |
| Conread position: | 377-791 |
| Cow position: | chr24:6434577-6434155 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 186 |
| Conread position: | 377-791 |
| Cow position: | chr24:9188395-9188817 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 54 |
| Conread position: | 377-791 |
| Cow position: | chr24:12484980-12485403 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 199 |
| Conread position: | 377-791 |
| Cow position: | chr24:13188510-13188099 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 95 |
| Conread position: | 377-791 |
| Cow position: | chr24:16084322-16084746 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 112 |
| Conread position: | 377-791 |
| Cow position: | chr24:22793509-22793088 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 189 |
| Conread position: | 377-791 |
| Cow position: | chr24:33739003-33739430 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 93 |
| Conread position: | 377-791 |
| Cow position: | chr24:35838283-35838711 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 93 |
| Conread position: | 377-791 |
| Cow position: | chr24:40549211-40548791 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 199 |
| Conread position: | 378-782 |
| Cow position: | chr24:14873014-14873418 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 242 |
| Conread position: | 378-783 |
| Cow position: | chr24:14384279-14384691 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 137 |
| Conread position: | 378-790 |
| Cow position: | chr24:12113711-12114124 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 286 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 116, 92 |
| Conread position: | 378-790 |
| Cow position: | chr24:37217334-37216919 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 8 |
| Conread position: | 383-574 |
| Cow position: | chr24:6646034-6645838 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 154 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 383-783 |
| Cow position: | chr24:33933697-33933288 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 200 |
| Conread position: | 386-645 |
| Cow position: | chr24:1437860-1438118 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 116, 139 |
| Conread position: | 387-783 |
| Cow position: | chr24:4415202-4415603 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 101 |
| Conread position: | 390-777 |
| Cow position: | chr24:32331639-32331252 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 111, 43 |
| Conread position: | 391-791 |
| Cow position: | chr24:15392017-15392395 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 283 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 105, 67 |
| Conread position: | 393-791 |
| Cow position: | chr24:44017867-44017460 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 183 |
| Conread position: | 402-709 |
| Cow position: | chr24:14884942-14885252 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 87, 59 |
| Conread position: | 423-630 |
| Cow position: | chr24:13524395-13524184 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 73, 140 |
| Conread position: | 423-783 |
| Cow position: | chr24:22952427-22952058 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 153 |
| Conread position: | 454-790 |
| Cow position: | chr24:12162134-12161794 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 241 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 43, 13 |
| Conread position: | 465-791 |
| Cow position: | chr24:39678652-39678344 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 148, 14 |
| Conread position: | 494-784 |
| Cow position: | chr24:12224247-12224548 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 26, 80 |
| Conread position: | 497-749 |
| Cow position: | chr24:38635966-38635711 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 69, 81 |
| Conread position: | 498-791 |
| Cow position: | chr24:12131275-12131570 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 68, 80 |
| Conread position: | 514-790 |
| Cow position: | chr24:14390540-14390810 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 95, 59 |
| Conread position: | 551-791 |
| Cow position: | chr24:6645570-6645329 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 62, 7 |
| Conread position: | 605-791 |
| Cow position: | chr24:13531431-13531622 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 8, 36 |
Show alignments to all cow chromosomes.