Cow genome map
| Conread name: | Ss1.1-Lym1-jns97_C07.f.5 |
| Conread position: | 154-499 |
| Cow position: | chr29:14085970-14086309 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 41 |
| Conread position: | 166-509 |
| Cow position: | chr29:5982735-5983080 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 19 |
| Conread position: | 203-360 |
| Cow position: | chr29:2749781-2749931 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 139, 38 |
| Conread position: | 245-442 |
| Cow position: | chr29:8330941-8331136 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 131, 60 |
| Conread position: | 259-791 |
| Cow position: | chr29:1715625-1715087 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 178 |
| Conread position: | 259-791 |
| Cow position: | chr29:15949809-15950345 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 46 |
| Conread position: | 277-548 |
| Cow position: | chr29:24708884-24709163 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 98, 22 |
| Conread position: | 278-440 |
| Cow position: | chr29:13649045-13648882 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 77, 52 |
| Conread position: | 290-791 |
| Cow position: | chr29:104913-104412 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 51 |
| Conread position: | 332-791 |
| Cow position: | chr29:30811830-30811371 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 111 |
| Conread position: | 340-790 |
| Cow position: | chr29:40502686-40503139 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 16 |
| Conread position: | 341-656 |
| Cow position: | chr29:410229-410548 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 341-687 |
| Cow position: | chr29:9643463-9643816 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 22 |
| Conread position: | 341-775 |
| Cow position: | chr29:14586218-14585782 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 341-783 |
| Cow position: | chr29:48184-48629 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 22 |
| Conread position: | 341-790 |
| Cow position: | chr29:2100141-2099684 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 341-790 |
| Cow position: | chr29:2690196-2689742 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 341-790 |
| Cow position: | chr29:6266205-6266654 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 341-790 |
| Cow position: | chr29:16022826-16022369 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 341-790 |
| Cow position: | chr29:23976136-23975676 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 341-790 |
| Cow position: | chr29:32540106-32539650 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 341-790 |
| Cow position: | chr29:43322850-43322399 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 346-783 |
| Cow position: | chr29:19653398-19652955 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 17 |
| Conread position: | 346-790 |
| Cow position: | chr29:7430929-7431376 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 17 |
| Conread position: | 347-775 |
| Cow position: | chr29:20251448-20251014 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 15 |
| Conread position: | 347-783 |
| Cow position: | chr29:19622958-19623400 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 16 |
| Conread position: | 348-792 |
| Cow position: | chr29:14013753-14013310 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 298 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 348-792 |
| Cow position: | chr29:14072658-14073101 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 298 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 351-688 |
| Cow position: | chr29:12796097-12796418 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 26, 12 |
| Conread position: | 351-783 |
| Cow position: | chr29:35196949-35196519 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 12 |
| Conread position: | 352-790 |
| Cow position: | chr29:25932260-25932704 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 11 |
| Conread position: | 353-790 |
| Cow position: | chr29:10647965-10648408 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 224 |
| Conread position: | 370-681 |
| Cow position: | chr29:2750153-2750456 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 94 |
| Conread position: | 370-783 |
| Cow position: | chr29:39079444-39079859 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 213 |
| Conread position: | 375-535 |
| Cow position: | chr29:21426767-21426926 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 122, 42 |
| Conread position: | 376-687 |
| Cow position: | chr29:2466072-2466394 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 119, 202 |
| Conread position: | 376-791 |
| Cow position: | chr29:10847826-10848272 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 274 |
| Conread position: | 376-791 |
| Cow position: | chr29:11049540-11049121 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 160 |
| Conread position: | 376-791 |
| Cow position: | chr29:16770385-16769971 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 197 |
| Conread position: | 376-792 |
| Cow position: | chr29:21543107-21543528 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 175 |
| Conread position: | 377-495 |
| Cow position: | chr29:15968600-15968718 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 377-558 |
| Cow position: | chr29:31181676-31181490 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 119, 160 |
| Conread position: | 377-600 |
| Cow position: | chr29:34925740-34925508 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 179 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 377-700 |
| Cow position: | chr29:13582329-13582008 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 81 |
| Conread position: | 377-724 |
| Cow position: | chr29:18856683-18857039 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 199 |
| Conread position: | 377-749 |
| Cow position: | chr29:45587099-45587465 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 178 |
| Conread position: | 377-762 |
| Cow position: | chr29:669796-670189 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 169 |
| Conread position: | 377-783 |
| Cow position: | chr29:7841057-7840643 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 200 |
| Conread position: | 377-784 |
| Cow position: | chr29:45459977-45459562 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 167 |
| Conread position: | 377-790 |
| Cow position: | chr29:2841112-2841529 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 163 |
| Conread position: | 377-790 |
| Cow position: | chr29:26164561-26164983 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 199 |
| Conread position: | 377-790 |
| Cow position: | chr29:34799546-34799970 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 201 |
| Conread position: | 377-791 |
| Cow position: | chr29:610351-610773 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 199 |
| Conread position: | 377-791 |
| Cow position: | chr29:27250081-27250496 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 134 |
| Conread position: | 377-791 |
| Cow position: | chr29:27980658-27981079 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 28 |
| Conread position: | 377-791 |
| Cow position: | chr29:35297135-35296713 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 160 |
| Conread position: | 378-783 |
| Cow position: | chr29:27040512-27040917 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 39 |
| Conread position: | 378-791 |
| Cow position: | chr29:15894590-15895012 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 198 |
| Conread position: | 378-791 |
| Cow position: | chr29:19885330-19884908 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 198 |
| Conread position: | 378-791 |
| Cow position: | chr29:43365742-43366158 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 72 |
| Conread position: | 383-790 |
| Cow position: | chr29:10823714-10824116 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 193 |
| Conread position: | 384-790 |
| Cow position: | chr29:5957858-5957442 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 192 |
| Conread position: | 387-791 |
| Cow position: | chr29:17663155-17662762 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 255 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 109, 189 |
| Conread position: | 389-790 |
| Cow position: | chr29:38227229-38226841 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 184 |
| Conread position: | 390-712 |
| Cow position: | chr29:42802394-42802061 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 175 |
| Conread position: | 390-713 |
| Cow position: | chr29:42650534-42650201 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 175 |
| Conread position: | 390-790 |
| Cow position: | chr29:16016905-16017295 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 103, 183 |
| Conread position: | 423-792 |
| Cow position: | chr29:32316256-32315878 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 153 |
| Conread position: | 457-791 |
| Cow position: | chr29:16109909-16109568 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 8, 120 |
| Conread position: | 497-788 |
| Cow position: | chr29:13852889-13853180 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 214 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 115, 10 |
| Conread position: | 497-790 |
| Cow position: | chr29:4634840-4635127 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 114, 25 |
| Conread position: | 497-791 |
| Cow position: | chr29:15969015-15969312 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 213 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 116, 25 |
| Conread position: | 517-791 |
| Cow position: | chr29:28060548-28060827 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 95, 54 |
| Conread position: | 545-791 |
| Cow position: | chr29:31181212-31180962 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 68, 28 |
| Conread position: | 581-789 |
| Cow position: | chr29:21427002-21427214 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 32, 22 |
Show alignments to all cow chromosomes.