Cow genome map

Conread name: Ss1.1-Lym2-sn01_H04.f.5

Conread position: 1-176
Cow position: chr17:31949014-31949186 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 142
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 152, 16

Conread position: 1-193
Cow position: chr17:28886497-28886299 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 139
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 39, 45

Conread position: 1-194
Cow position: chr17:16446948-16447144 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 141
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 152, 31

Conread position: 1-210
Cow position: chr17:41704427-41704640 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 155
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 14, 42

Conread position: 1-218
Cow position: chr17:8935432-8935650 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 160
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 144, 16

Conread position: 2-178
Cow position: chr17:254627-254447 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 129
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 151, 31

Conread position: 2-185
Cow position: chr17:2079160-2078983 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 144, 16

Conread position: 2-194
Cow position: chr17:40393511-40393317 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 137
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 150, 39

Conread position: 2-200
Cow position: chr17:3049834-3049638 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 141
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 8, 28

Conread position: 2-224
Cow position: chr17:2088447-2088223 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 160
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 150, 39

Conread position: 3-210
Cow position: chr17:18198912-18198712 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 144
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 4-185
Cow position: chr17:28359307-28359124 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 133
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 150, 37

Conread position: 4-194
Cow position: chr17:6263385-6263192 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 136
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 147, 37

Conread position: 5-185
Cow position: chr17:2177503-2177317 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 31, 0

Conread position: 5-194
Cow position: chr17:1083554-1083366 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 138
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 148, 30

Conread position: 5-199
Cow position: chr17:1312362-1312168 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 140
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 149, 27

Conread position: 5-200
Cow position: chr17:13424787-13424591 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 143
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 54, 36

Conread position: 5-208
Cow position: chr17:34317234-34317437 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 145
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 148, 36

Conread position: 6-194
Cow position: chr17:923149-922960 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 147, 13

Conread position: 6-198
Cow position: chr17:29156909-29156716 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 141
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 147, 15

Conread position: 6-199
Cow position: chr17:19998620-19998430 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 136
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 144, 26

Conread position: 6-199
Cow position: chr17:38364747-38364553 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 152
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 146, 13

Conread position: 7-154
Cow position: chr17:37864039-37864184 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 29, 0

Conread position: 7-171
Cow position: chr17:20546665-20546498 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 143, 26

Conread position: 7-171
Cow position: chr17:31986673-31986840 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 143, 29

Conread position: 7-267
Cow position: chr17:13849732-13849467 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 185
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 142, 28

Conread position: 8-178
Cow position: chr17:453369-453194 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 7, 27

Conread position: 8-191
Cow position: chr17:22238072-22237888 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 132
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 135, 27

Conread position: 8-234
Cow position: chr17:29823075-29822842 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 166
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 146, 27

Conread position: 12-132
Cow position: chr17:13202412-13202294 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 14-215
Cow position: chr17:38758745-38758944 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 145
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 121, 14

Conread position: 17-165
Cow position: chr17:4152750-4152900 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 135, 23

Conread position: 17-200
Cow position: chr17:2006165-2005983 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 137, 24

Conread position: 17-240
Cow position: chr17:20405195-20404970 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 165
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 137, 19

Conread position: 18-149
Cow position: chr17:31099370-31099241 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 18-165
Cow position: chr17:18315508-18315357 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 136, 11

Conread position: 18-167
Cow position: chr17:3155471-3155618 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 18-171
Cow position: chr17:400098-400254 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 132, 18

Conread position: 18-171
Cow position: chr17:3652210-3652366 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 132, 15

Conread position: 18-171
Cow position: chr17:6612539-6612383 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 135, 18

Conread position: 18-171
Cow position: chr17:8212571-8212417 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 132, 17

Conread position: 18-171
Cow position: chr17:15093945-15094101 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 135, 15

Conread position: 18-171
Cow position: chr17:15559089-15558933 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 132, 18

Conread position: 18-171
Cow position: chr17:16505229-16505386 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 58, 18

Conread position: 18-171
Cow position: chr17:16699960-16700116 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 132, 18

Conread position: 18-171
Cow position: chr17:17958113-17957958 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 132, 15

Conread position: 18-171
Cow position: chr17:20226118-20225963 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 132, 15

Conread position: 18-171
Cow position: chr17:21716979-21716823 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 135, 18

Conread position: 18-171
Cow position: chr17:25834934-25834778 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 132, 18

Conread position: 18-171
Cow position: chr17:26829227-26829383 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 132, 15

Conread position: 18-171
Cow position: chr17:31671383-31671539 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 135, 15

Conread position: 18-171
Cow position: chr17:34564863-34564707 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 127, 18

Conread position: 18-171
Cow position: chr17:36284784-36284628 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 132, 18

Conread position: 18-171
Cow position: chr17:39823677-39823833 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 132, 18

Conread position: 18-171
Cow position: chr17:43471074-43471230 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 132, 15

Conread position: 18-178
Cow position: chr17:5805972-5806135 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 132, 18

Conread position: 18-185
Cow position: chr17:1970668-1970498 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 134, 18

Conread position: 18-185
Cow position: chr17:5638375-5638545 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 134, 18

Conread position: 18-185
Cow position: chr17:5672003-5672173 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 134, 18

Conread position: 18-185
Cow position: chr17:8993824-8993993 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 134, 22

Conread position: 18-185
Cow position: chr17:20361290-20361459 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 134, 18

Conread position: 18-185
Cow position: chr17:20391291-20391121 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 132, 18

Conread position: 18-185
Cow position: chr17:21182004-21181834 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 134, 15

Conread position: 18-185
Cow position: chr17:34235734-34235904 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 134, 15

Conread position: 18-194
Cow position: chr17:19214893-19215073 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 131, 22

Conread position: 18-200
Cow position: chr17:6956156-6955974 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 134, 15

Conread position: 18-200
Cow position: chr17:22248735-22248917 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 134, 15

Conread position: 18-940
Cow position: chr17:11677720-11678645 (view UCSC Genome Browser custom track)
Alignm length: 928
Alignm identity: 126
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 135, 18

Conread position: 21-168
Cow position: chr17:20360095-20359947 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 124, 13

Conread position: 21-193
Cow position: chr17:40811230-40811059 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 129, 20

Conread position: 21-194
Cow position: chr17:3197118-3197292 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 132, 20

Conread position: 21-200
Cow position: chr17:4107549-4107731 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 132, 12

Conread position: 21-200
Cow position: chr17:15328794-15328616 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 132
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 131, 20

Conread position: 31-185
Cow position: chr17:27791287-27791445 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 122, 12

Conread position: 33-198
Cow position: chr17:4211436-4211266 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 113, 0

Conread position: 33-200
Cow position: chr17:18884872-18885042 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 121, 152

Conread position: 34-171
Cow position: chr17:15118319-15118177 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 116, 0

Conread position: 34-173
Cow position: chr17:43991987-43991843 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 119, 0

Conread position: 36-133
Cow position: chr17:25077371-25077468 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 82
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 36-171
Cow position: chr17:12856752-12856610 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 36-185
Cow position: chr17:29824459-29824613 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 116, 0

Conread position: 36-187
Cow position: chr17:24503008-24502851 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 117, 0

Conread position: 36-194
Cow position: chr17:25739797-25739634 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 117
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 116, 0

Conread position: 36-198
Cow position: chr17:33934317-33934481 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 96, 118

Conread position: 36-216
Cow position: chr17:41898514-41898694 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 118, 69

Conread position: 41-195
Cow position: chr17:6123279-6123120 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 111, 0

Conread position: 41-200
Cow position: chr17:4480387-4480547 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 111, 136

Conread position: 41-200
Cow position: chr17:24785686-24785525 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 154, 0

Conread position: 41-231
Cow position: chr17:23320924-23321124 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 145
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 111, 0

Conread position: 42-185
Cow position: chr17:16904074-16903926 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 110, 0

Conread position: 42-185
Cow position: chr17:24026491-24026638 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 110, 59

Conread position: 42-185
Cow position: chr17:29471925-29471777 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 108, 0

Conread position: 42-187
Cow position: chr17:15854228-15854081 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 110, 145

Conread position: 42-194
Cow position: chr17:731003-731160 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 114
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 110, 0

Conread position: 42-194
Cow position: chr17:8223201-8223043 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 85, 0

Conread position: 42-196
Cow position: chr17:18201218-18201067 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 6, 42

Conread position: 43-200
Cow position: chr17:148402-148241 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 109, 142

Conread position: 58-206
Cow position: chr17:22500865-22500717 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 109
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 142, 124

Show alignments to all cow chromosomes.