Cow genome map

Conread name: Ss1.1-Lym2-sn01_H04.f.5

Conread position: 1-215
Cow position: chr19:50668841-50668622 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 155
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 134, 34

Conread position: 2-245
Cow position: chr19:23821696-23821945 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 168
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 150, 26

Conread position: 3-200
Cow position: chr19:49401737-49401542 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 136
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 40, 65

Conread position: 4-194
Cow position: chr19:32471727-32471534 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 140
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 126, 32

Conread position: 4-200
Cow position: chr19:158431-158624 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 136
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 97, 14

Conread position: 4-211
Cow position: chr19:2481079-2481293 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 152
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 138, 15

Conread position: 5-185
Cow position: chr19:24928181-24928366 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 138
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 27, 40

Conread position: 5-185
Cow position: chr19:40883775-40883954 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 134
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 148, 35

Conread position: 5-191
Cow position: chr19:27081656-27081840 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 128
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 5-194
Cow position: chr19:19500934-19501124 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 136
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 145, 31

Conread position: 5-218
Cow position: chr19:37626666-37626881 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 153
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 147, 18

Conread position: 6-151
Cow position: chr19:40439346-40439203 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 107
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 6-197
Cow position: chr19:45146515-45146328 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 146
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 21, 43

Conread position: 6-200
Cow position: chr19:1581147-1581345 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 139
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 144, 30

Conread position: 6-200
Cow position: chr19:33586108-33586299 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 140
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 147, 30

Conread position: 6-208
Cow position: chr19:38439522-38439327 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 173, 15

Conread position: 7-152
Cow position: chr19:30352969-30352830 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 94, 28

Conread position: 7-191
Cow position: chr19:36100995-36101182 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 132
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 147, 29

Conread position: 7-193
Cow position: chr19:14581039-14580850 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 139
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 143, 33

Conread position: 8-169
Cow position: chr19:52147667-52147834 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 7, 36

Conread position: 12-194
Cow position: chr19:28794579-28794764 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 140, 29

Conread position: 14-204
Cow position: chr19:5765622-5765431 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 138
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 136, 22

Conread position: 17-194
Cow position: chr19:12551355-12551529 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 128
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 115, 24

Conread position: 18-144
Cow position: chr19:6532205-6532081 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 18-151
Cow position: chr19:4283552-4283683 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 18-151
Cow position: chr19:42304877-42305008 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 18-156
Cow position: chr19:777262-777126 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 15, 0

Conread position: 18-171
Cow position: chr19:2249738-2249894 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 134, 15

Conread position: 18-171
Cow position: chr19:10196154-10196003 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 132, 15

Conread position: 18-171
Cow position: chr19:20928922-20928766 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 132, 15

Conread position: 18-171
Cow position: chr19:23488502-23488346 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 134, 15

Conread position: 18-171
Cow position: chr19:30515296-30515452 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 132, 15

Conread position: 18-171
Cow position: chr19:41223917-41224073 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 132, 18

Conread position: 18-171
Cow position: chr19:55163911-55164067 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 134, 15

Conread position: 18-185
Cow position: chr19:5887898-5887728 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 132, 18

Conread position: 18-185
Cow position: chr19:29394088-29393918 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 132, 15

Conread position: 18-185
Cow position: chr19:33118978-33119148 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 135, 15

Conread position: 18-185
Cow position: chr19:35081975-35081805 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 132, 18

Conread position: 18-185
Cow position: chr19:41204481-41204651 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 132, 18

Conread position: 18-185
Cow position: chr19:48626801-48626635 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 132, 16

Conread position: 18-191
Cow position: chr19:55843740-55843569 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 124
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 15, 0

Conread position: 18-194
Cow position: chr19:23383185-23383006 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 134
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 134, 22

Conread position: 21-185
Cow position: chr19:12776984-12776817 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 122
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 131, 20

Conread position: 21-200
Cow position: chr19:12652618-12652439 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 131, 20

Conread position: 29-200
Cow position: chr19:11778057-11777881 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 128
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 125, 0

Conread position: 31-194
Cow position: chr19:28575665-28575835 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 33-151
Cow position: chr19:37844045-37844161 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 99, 0

Conread position: 33-171
Cow position: chr19:35362826-35362969 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 117, 0

Conread position: 33-185
Cow position: chr19:21336835-21336992 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 119, 0

Conread position: 33-216
Cow position: chr19:15252749-15252558 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 35-185
Cow position: chr19:35288827-35288979 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 8, 36

Conread position: 35-200
Cow position: chr19:35781610-35781440 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 135
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 8, 152

Conread position: 35-200
Cow position: chr19:39181802-39181976 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 134
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 8, 51

Conread position: 36-150
Cow position: chr19:30540663-30540777 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 90
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 36-151
Cow position: chr19:8567090-8566975 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 36-171
Cow position: chr19:3086519-3086382 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 98, 0

Conread position: 36-171
Cow position: chr19:5679921-5680061 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 114, 0

Conread position: 36-171
Cow position: chr19:30037177-30037317 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 117, 0

Conread position: 36-178
Cow position: chr19:7346113-7345967 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 116, 16

Conread position: 36-185
Cow position: chr19:16316489-16316643 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 117, 0

Conread position: 36-194
Cow position: chr19:14180271-14180434 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 99, 105

Conread position: 36-194
Cow position: chr19:29367258-29367095 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 117, 0

Conread position: 36-194
Cow position: chr19:29624766-29624603 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 117, 0

Conread position: 36-199
Cow position: chr19:5429081-5429247 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 114, 149

Conread position: 36-200
Cow position: chr19:20612064-20611898 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 116, 149

Conread position: 36-200
Cow position: chr19:41518903-41518739 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 119
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 98, 144

Conread position: 36-220
Cow position: chr19:39976256-39976442 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 139
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 117, 149

Conread position: 37-171
Cow position: chr19:3406909-3406770 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 115, 0

Conread position: 37-188
Cow position: chr19:43149312-43149154 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 79, 0

Conread position: 37-227
Cow position: chr19:22860125-22860325 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 149
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 108, 0

Conread position: 41-171
Cow position: chr19:1169197-1169331 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 111, 0

Conread position: 41-173
Cow position: chr19:8206294-8206431 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 111, 0

Conread position: 41-185
Cow position: chr19:24734862-24734713 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 111, 0

Conread position: 41-194
Cow position: chr19:22512966-22512811 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 110, 93

Conread position: 41-194
Cow position: chr19:23463224-23463382 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 113, 0

Conread position: 41-211
Cow position: chr19:36150501-36150323 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 137
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 111, 17

Conread position: 42-127
Cow position: chr19:39454385-39454470 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 75
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 42-178
Cow position: chr19:48534445-48534304 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 106
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 110, 0

Conread position: 42-185
Cow position: chr19:40790634-40790782 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 110, 0

Conread position: 42-185
Cow position: chr19:41674034-41674181 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 110, 62

Conread position: 42-188
Cow position: chr19:4447936-4447785 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 108, 0

Conread position: 42-188
Cow position: chr19:50561784-50561636 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 111, 92

Conread position: 42-194
Cow position: chr19:930543-930386 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 110, 0

Conread position: 42-194
Cow position: chr19:30518457-30518300 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 110, 0

Conread position: 42-200
Cow position: chr19:34905601-34905761 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 110, 142

Conread position: 42-216
Cow position: chr19:33932747-33932926 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 103, 164

Conread position: 42-242
Cow position: chr19:42867352-42867154 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 143
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 108, 141

Conread position: 47-199
Cow position: chr19:39794177-39794023 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 105, 141

Show alignments to all cow chromosomes.