Cow genome map

Conread name: Ss1.1-Lym2-sn01_H04.f.5

Conread position: 1-151
Cow position: chr23:14265996-14265848 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 31, 0

Conread position: 1-151
Cow position: chr23:29043447-29043292 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 1-185
Cow position: chr23:6720824-6721014 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 31, 10

Conread position: 1-188
Cow position: chr23:26230781-26230596 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 134
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 94, 40

Conread position: 2-130
Cow position: chr23:9192729-9192857 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 34, 43

Conread position: 2-180
Cow position: chr23:26541301-26541477 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 125
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 2-207
Cow position: chr23:12828762-12828959 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 149
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 147, 15

Conread position: 2-225
Cow position: chr23:15038679-15038901 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 150
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 34, 43

Conread position: 3-196
Cow position: chr23:2033046-2032851 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 137
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 147, 37

Conread position: 5-194
Cow position: chr23:22170559-22170367 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 145
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 26, 35

Conread position: 5-199
Cow position: chr23:4437270-4437075 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 139
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 140, 36

Conread position: 5-234
Cow position: chr23:9131315-9131543 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 158
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 145, 13

Conread position: 6-185
Cow position: chr23:2472650-2472832 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 146, 35

Conread position: 6-194
Cow position: chr23:10912965-10912776 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 139
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 148, 13

Conread position: 6-195
Cow position: chr23:25565652-25565452 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 141
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 6-200
Cow position: chr23:22143659-22143853 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 134
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 175, 35

Conread position: 7-171
Cow position: chr23:4267086-4266919 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 143, 26

Conread position: 7-171
Cow position: chr23:40710571-40710404 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 143, 29

Conread position: 7-185
Cow position: chr23:31584952-31584771 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 133
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 143, 29

Conread position: 7-194
Cow position: chr23:21351305-21351495 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 138
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 143, 33

Conread position: 7-194
Cow position: chr23:24098776-24098588 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 139
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 145, 34

Conread position: 7-231
Cow position: chr23:28084805-28084573 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 166
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 143, 26

Conread position: 8-185
Cow position: chr23:11070730-11070549 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 135
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 7, 27

Conread position: 11-234
Cow position: chr23:30837923-30838153 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 166
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 49, 10

Conread position: 17-185
Cow position: chr23:15569202-15569031 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 135, 16

Conread position: 17-204
Cow position: chr23:40890414-40890225 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 139
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 137, 15

Conread position: 18-151
Cow position: chr23:3877509-3877641 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 101
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 18-151
Cow position: chr23:21009325-21009194 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 18-171
Cow position: chr23:573628-573781 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 134, 15

Conread position: 18-171
Cow position: chr23:2528757-2528913 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 134, 15

Conread position: 18-171
Cow position: chr23:3549556-3549712 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 131, 18

Conread position: 18-171
Cow position: chr23:4100517-4100361 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 134, 15

Conread position: 18-171
Cow position: chr23:4487329-4487485 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 134, 15

Conread position: 18-171
Cow position: chr23:4581665-4581509 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 132, 18

Conread position: 18-171
Cow position: chr23:19316572-19316728 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 132, 15

Conread position: 18-171
Cow position: chr23:39745499-39745343 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 132, 18

Conread position: 18-171
Cow position: chr23:39784396-39784240 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 132, 15

Conread position: 18-171
Cow position: chr23:41015568-41015412 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 132, 18

Conread position: 18-176
Cow position: chr23:977410-977571 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 135, 18

Conread position: 18-178
Cow position: chr23:31606067-31605904 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 134, 15

Conread position: 18-185
Cow position: chr23:1113591-1113421 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 134, 15

Conread position: 18-185
Cow position: chr23:2723385-2723215 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 132, 18

Conread position: 18-185
Cow position: chr23:5458378-5458208 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 134, 15

Conread position: 18-185
Cow position: chr23:9267223-9267393 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 132, 15

Conread position: 18-185
Cow position: chr23:25351999-25351829 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 132, 15

Conread position: 18-188
Cow position: chr23:11080024-11079851 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 132, 15

Conread position: 18-191
Cow position: chr23:14215595-14215766 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 123
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 18-194
Cow position: chr23:3286396-3286219 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 134, 18

Conread position: 18-200
Cow position: chr23:8708030-8707848 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 130
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 177, 22

Conread position: 19-151
Cow position: chr23:11459604-11459734 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 21-191
Cow position: chr23:16495640-16495808 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 122
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 21-194
Cow position: chr23:27402771-27402594 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 77, 11

Conread position: 31-194
Cow position: chr23:28915958-28915788 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 32-185
Cow position: chr23:4892326-4892165 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 32-194
Cow position: chr23:7129526-7129696 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 128
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 11, 0

Conread position: 34-186
Cow position: chr23:671795-671640 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 118, 72

Conread position: 35-151
Cow position: chr23:36485406-36485524 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 36-171
Cow position: chr23:10679210-10679350 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 114, 0

Conread position: 36-171
Cow position: chr23:24120178-24120038 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 116, 0

Conread position: 36-178
Cow position: chr23:4544694-4544841 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 122, 0

Conread position: 36-185
Cow position: chr23:954177-954331 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 114, 0

Conread position: 36-185
Cow position: chr23:5441540-5441386 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 116, 0

Conread position: 36-185
Cow position: chr23:11376695-11376848 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 116, 64

Conread position: 36-185
Cow position: chr23:35284897-35285051 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 115, 0

Conread position: 36-194
Cow position: chr23:12864311-12864159 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 122, 0

Conread position: 36-194
Cow position: chr23:14970331-14970494 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 117, 0

Conread position: 36-194
Cow position: chr23:20152597-20152760 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 116, 0

Conread position: 36-194
Cow position: chr23:36027629-36027792 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 116, 0

Conread position: 36-195
Cow position: chr23:5870785-5870949 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 117, 0

Conread position: 36-218
Cow position: chr23:4532079-4532273 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 138
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 85, 0

Conread position: 36-218
Cow position: chr23:34347518-34347335 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 113, 149

Conread position: 37-171
Cow position: chr23:3302477-3302338 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 115, 0

Conread position: 37-171
Cow position: chr23:10874040-10874179 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 113, 0

Conread position: 37-171
Cow position: chr23:10936675-10936813 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 108, 0

Conread position: 37-171
Cow position: chr23:11712073-11712212 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 116, 0

Conread position: 37-200
Cow position: chr23:7249504-7249661 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 97, 104

Conread position: 41-171
Cow position: chr23:38934616-38934751 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 111, 0

Conread position: 41-171
Cow position: chr23:40773946-40773811 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 111, 0

Conread position: 41-185
Cow position: chr23:19056743-19056892 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 109, 0

Conread position: 41-194
Cow position: chr23:19948404-19948562 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 111, 0

Conread position: 41-194
Cow position: chr23:28222319-28222162 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 111, 99

Conread position: 41-200
Cow position: chr23:610319-610157 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 108, 150

Conread position: 42-170
Cow position: chr23:1535733-1535603 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 111, 0

Conread position: 42-178
Cow position: chr23:2023471-2023612 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 110, 0

Conread position: 42-194
Cow position: chr23:1959744-1959587 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 114
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 110, 0

Conread position: 42-194
Cow position: chr23:15180573-15180418 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 113
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 110, 0

Conread position: 42-194
Cow position: chr23:15529202-15529047 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 110, 65

Conread position: 42-194
Cow position: chr23:29447642-29447792 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 111, 25

Conread position: 42-200
Cow position: chr23:26941386-26941223 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 111, 0

Conread position: 42-201
Cow position: chr23:4636734-4636895 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 110, 143

Conread position: 42-207
Cow position: chr23:7293797-7293637 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 47, 40

Conread position: 45-194
Cow position: chr23:2369404-2369251 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 107, 133

Conread position: 49-210
Cow position: chr23:10130768-10130933 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 104, 39

Conread position: 51-245
Cow position: chr23:10416068-10416261 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 148
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 30, 145

Conread position: 58-194
Cow position: chr23:6223418-6223277 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 71-188
Cow position: chr23:11967857-11967742 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 69, 0

Show alignments to all cow chromosomes.