Cow genome map
| Conread name: | Ss1.1-Lym2-sn01_H04.f.5 |
| Conread position: | 1-199 |
| Cow position: | chr25:10012613-10012814 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 120, 39 |
| Conread position: | 1-227 |
| Cow position: | chr25:21024795-21025022 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 152, 17 |
| Conread position: | 2-188 |
| Cow position: | chr25:18023199-18023008 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 83, 39 |
| Conread position: | 2-200 |
| Cow position: | chr25:33066234-33066035 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 133, 26 |
| Conread position: | 2-210 |
| Cow position: | chr25:24459137-24459345 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 48, 39 |
| Conread position: | 3-152 |
| Cow position: | chr25:32663382-32663237 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 3-166 |
| Cow position: | chr25:31954522-31954687 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 142, 33 |
| Conread position: | 3-178 |
| Cow position: | chr25:15285025-15284847 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 147, 33 |
| Conread position: | 3-222 |
| Cow position: | chr25:28230358-28230139 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 129, 26 |
| Conread position: | 4-200 |
| Cow position: | chr25:19330610-19330409 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 155, 25 |
| Conread position: | 5-156 |
| Cow position: | chr25:25238661-25238811 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 149, 30 |
| Conread position: | 5-194 |
| Cow position: | chr25:26849833-26850024 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 33 |
| Conread position: | 6-180 |
| Cow position: | chr25:6607245-6607422 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 129, 37 |
| Conread position: | 6-185 |
| Cow position: | chr25:11666103-11665922 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 147, 35 |
| Conread position: | 6-185 |
| Cow position: | chr25:20771896-20772080 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 123, 27 |
| Conread position: | 6-195 |
| Cow position: | chr25:23394303-23394114 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 147, 27 |
| Conread position: | 7-171 |
| Cow position: | chr25:17994083-17994250 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 143, 26 |
| Conread position: | 7-171 |
| Cow position: | chr25:21120753-21120582 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 130, 26 |
| Conread position: | 8-189 |
| Cow position: | chr25:7582384-7582562 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 17-194 |
| Cow position: | chr25:14755985-14756165 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 133, 16 |
| Conread position: | 17-200 |
| Cow position: | chr25:3171988-3172171 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 118, 26 |
| Conread position: | 18-151 |
| Cow position: | chr25:22198010-22197879 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 18-165 |
| Cow position: | chr25:10158170-10158020 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 132, 18 |
| Conread position: | 18-171 |
| Cow position: | chr25:4858069-4858226 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 134, 15 |
| Conread position: | 18-171 |
| Cow position: | chr25:13955961-13956117 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 134, 15 |
| Conread position: | 18-171 |
| Cow position: | chr25:14555096-14554940 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 132, 18 |
| Conread position: | 18-171 |
| Cow position: | chr25:17808350-17808506 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 132, 15 |
| Conread position: | 18-171 |
| Cow position: | chr25:17905069-17904913 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 132, 15 |
| Conread position: | 18-171 |
| Cow position: | chr25:21966818-21966662 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 132, 22 |
| Conread position: | 18-171 |
| Cow position: | chr25:23601515-23601670 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 126, 18 |
| Conread position: | 18-171 |
| Cow position: | chr25:35589506-35589350 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 135, 18 |
| Conread position: | 18-176 |
| Cow position: | chr25:27145851-27145690 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 134, 18 |
| Conread position: | 18-177 |
| Cow position: | chr25:34164133-34164295 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 134, 15 |
| Conread position: | 18-185 |
| Cow position: | chr25:3688564-3688394 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 134, 15 |
| Conread position: | 18-185 |
| Cow position: | chr25:8935225-8935055 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 132, 18 |
| Conread position: | 18-185 |
| Cow position: | chr25:12318395-12318565 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 132, 15 |
| Conread position: | 18-185 |
| Cow position: | chr25:36127479-36127648 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 134, 15 |
| Conread position: | 18-234 |
| Cow position: | chr25:36512703-36512480 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 22, 28 |
| Conread position: | 21-200 |
| Cow position: | chr25:27231773-27231593 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 130, 20 |
| Conread position: | 29-133 |
| Cow position: | chr25:1025022-1025126 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-194 |
| Cow position: | chr25:13242017-13241849 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 121, 5 |
| Conread position: | 32-216 |
| Cow position: | chr25:23845433-23845615 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 152, 35 |
| Conread position: | 36-171 |
| Cow position: | chr25:15429267-15429407 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 36-171 |
| Cow position: | chr25:27076472-27076334 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 36-171 |
| Cow position: | chr25:29525455-29525594 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 114, 40 |
| Conread position: | 36-178 |
| Cow position: | chr25:15618110-15617964 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 36-185 |
| Cow position: | chr25:36351151-36350997 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 36-186 |
| Cow position: | chr25:18886071-18886226 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 36-191 |
| Cow position: | chr25:26755880-26755720 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 36-194 |
| Cow position: | chr25:18330363-18330525 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 116, 40 |
| Conread position: | 37-171 |
| Cow position: | chr25:19139160-19139299 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 37-185 |
| Cow position: | chr25:32610008-32610161 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 37-185 |
| Cow position: | chr25:35554080-35553927 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 40-175 |
| Cow position: | chr25:34121686-34121827 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 41-168 |
| Cow position: | chr25:9413751-9413619 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 41-171 |
| Cow position: | chr25:34508774-34508909 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 41-185 |
| Cow position: | chr25:19336919-19337068 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 41-194 |
| Cow position: | chr25:9595721-9595566 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 111, 93 |
| Conread position: | 41-194 |
| Cow position: | chr25:19923927-19923771 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 111, 33 |
| Conread position: | 41-200 |
| Cow position: | chr25:11044023-11043862 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 112, 143 |
| Conread position: | 42-151 |
| Cow position: | chr25:22111701-22111592 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 87 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 42-178 |
| Cow position: | chr25:41121409-41121266 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 42-185 |
| Cow position: | chr25:13960466-13960318 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 42-185 |
| Cow position: | chr25:34343503-34343649 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 110, 71 |
| Conread position: | 42-187 |
| Cow position: | chr25:35446348-35446202 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 110, 144 |
| Conread position: | 42-194 |
| Cow position: | chr25:25510296-25510139 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 42-200 |
| Cow position: | chr25:27609572-27609415 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 103, 131 |
| Conread position: | 44-181 |
| Cow position: | chr25:24165033-24164891 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 44-216 |
| Cow position: | chr25:13787369-13787190 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 48-207 |
| Cow position: | chr25:30636344-30636510 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 49-194 |
| Cow position: | chr25:26282424-26282274 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 103, 0 |
Show alignments to all cow chromosomes.