Cow genome map

Conread name: Ss1.1-Lym2-sn01_H04.f.5

Conread position: 1-185
Cow position: chr26:6430276-6430080 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 143
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 11, 0

Conread position: 1-185
Cow position: chr26:9825429-9825615 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 144, 29

Conread position: 2-182
Cow position: chr26:12551064-12551248 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 41, 20

Conread position: 2-185
Cow position: chr26:22531451-22531637 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 150, 30

Conread position: 2-187
Cow position: chr26:25038246-25038061 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 138
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 152, 37

Conread position: 2-188
Cow position: chr26:28422762-28422951 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 137
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 85, 40

Conread position: 2-200
Cow position: chr26:2610372-2610569 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 137
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 132, 33

Conread position: 2-200
Cow position: chr26:30569426-30569628 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 150
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 38, 178

Conread position: 3-200
Cow position: chr26:4111585-4111784 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 145
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 67, 25

Conread position: 4-191
Cow position: chr26:34606296-34606486 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 137
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 149, 32

Conread position: 5-215
Cow position: chr26:23095632-23095418 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 162
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 98, 31

Conread position: 6-194
Cow position: chr26:13199946-13199759 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 144
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 148, 14

Conread position: 6-234
Cow position: chr26:17591122-17590900 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 154
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 7-171
Cow position: chr26:4728385-4728550 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 145, 26

Conread position: 7-171
Cow position: chr26:19181381-19181548 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 146, 29

Conread position: 7-178
Cow position: chr26:4440075-4440249 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 143, 29

Conread position: 7-186
Cow position: chr26:8084522-8084340 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 129
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 143, 33

Conread position: 12-195
Cow position: chr26:11370381-11370198 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 134
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 140, 24

Conread position: 12-207
Cow position: chr26:28406332-28406140 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 138
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 140, 89

Conread position: 17-181
Cow position: chr26:14005083-14004917 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 120
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 28, 15

Conread position: 18-151
Cow position: chr26:2318504-2318635 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 18-151
Cow position: chr26:22692070-22691939 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 15, 0

Conread position: 18-165
Cow position: chr26:2902283-2902433 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 132, 18

Conread position: 18-171
Cow position: chr26:1342610-1342766 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 132, 15

Conread position: 18-171
Cow position: chr26:1636729-1636886 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 134, 18

Conread position: 18-171
Cow position: chr26:16887950-16888106 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 132, 15

Conread position: 18-171
Cow position: chr26:26612141-26611985 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 132, 15

Conread position: 18-171
Cow position: chr26:30786612-30786456 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 134, 22

Conread position: 18-171
Cow position: chr26:35121558-35121714 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 128, 15

Conread position: 18-173
Cow position: chr26:11537510-11537352 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 134, 18

Conread position: 18-181
Cow position: chr26:23890088-23889926 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 134, 17

Conread position: 18-185
Cow position: chr26:2487188-2487018 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 132, 18

Conread position: 18-185
Cow position: chr26:3571761-3571931 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 134, 15

Conread position: 18-185
Cow position: chr26:4486195-4486025 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 132, 18

Conread position: 18-185
Cow position: chr26:7558933-7559101 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 134, 15

Conread position: 18-185
Cow position: chr26:13183995-13183825 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 134, 15

Conread position: 18-185
Cow position: chr26:28706378-28706548 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 133, 18

Conread position: 18-185
Cow position: chr26:29433917-29433747 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 134, 15

Conread position: 18-185
Cow position: chr26:34265649-34265479 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 134, 18

Conread position: 18-185
Cow position: chr26:35560378-35560548 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 134, 15

Conread position: 18-187
Cow position: chr26:8885527-8885355 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 134, 15

Conread position: 18-187
Cow position: chr26:18928960-18928787 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 132, 15

Conread position: 18-200
Cow position: chr26:1088862-1088680 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 138
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 136, 15

Conread position: 18-200
Cow position: chr26:3026755-3026937 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 138
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 134, 18

Conread position: 21-194
Cow position: chr26:23591377-23591201 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 131, 20

Conread position: 24-156
Cow position: chr26:16864956-16864824 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 101
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 31-200
Cow position: chr26:7459291-7459459 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 133
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 121, 50

Conread position: 33-211
Cow position: chr26:27137577-27137760 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 131
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 121, 0

Conread position: 36-151
Cow position: chr26:20019762-20019647 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 91
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 36-175
Cow position: chr26:30716954-30716810 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 114, 0

Conread position: 36-181
Cow position: chr26:15199678-15199527 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 116, 0

Conread position: 36-185
Cow position: chr26:2348043-2348196 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 115, 18

Conread position: 36-185
Cow position: chr26:3564373-3564524 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 116, 21

Conread position: 36-185
Cow position: chr26:7677403-7677249 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 116, 0

Conread position: 36-185
Cow position: chr26:8873514-8873360 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 116, 0

Conread position: 36-185
Cow position: chr26:15146163-15146009 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 116, 0

Conread position: 36-185
Cow position: chr26:26286528-26286375 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 116, 0

Conread position: 36-188
Cow position: chr26:13271249-13271413 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 7, 0

Conread position: 36-194
Cow position: chr26:18383749-18383912 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 116, 0

Conread position: 36-195
Cow position: chr26:7307652-7307488 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 116, 145

Conread position: 36-200
Cow position: chr26:2480966-2480797 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 116, 157

Conread position: 36-201
Cow position: chr26:2670126-2670292 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 115, 136

Conread position: 36-211
Cow position: chr26:19132121-19131939 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 129
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 118, 0

Conread position: 37-151
Cow position: chr26:2226758-2226644 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 90
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 37-151
Cow position: chr26:9070230-9070116 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 90
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 37-151
Cow position: chr26:17798929-17799043 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 37-171
Cow position: chr26:1346326-1346465 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 113, 0

Conread position: 37-171
Cow position: chr26:3862411-3862550 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 115, 0

Conread position: 37-171
Cow position: chr26:5430144-5430283 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 113, 0

Conread position: 37-171
Cow position: chr26:9115706-9115567 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 115, 0

Conread position: 37-185
Cow position: chr26:33252819-33252972 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 113, 0

Conread position: 37-187
Cow position: chr26:8738749-8738905 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 115, 0

Conread position: 37-231
Cow position: chr26:11296736-11296939 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 149
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 113, 196

Conread position: 38-185
Cow position: chr26:3833702-3833549 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 40-172
Cow position: chr26:18522394-18522262 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 71, 112

Conread position: 41-171
Cow position: chr26:3096985-3097120 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 111, 0

Conread position: 41-185
Cow position: chr26:1390646-1390497 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 111, 0

Conread position: 42-185
Cow position: chr26:17428812-17428960 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 110
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 110, 0

Conread position: 42-185
Cow position: chr26:21539056-21538908 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 110
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 110, 0

Conread position: 42-188
Cow position: chr26:7506998-7506846 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 108, 0

Conread position: 42-194
Cow position: chr26:35424160-35424003 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 114
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 110, 0

Conread position: 42-195
Cow position: chr26:9694135-9694293 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 111, 0

Conread position: 42-206
Cow position: chr26:19347764-19347931 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 48, 144

Conread position: 42-232
Cow position: chr26:5680202-5680012 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 110, 65

Conread position: 43-185
Cow position: chr26:9558208-9558355 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 109, 0

Conread position: 49-185
Cow position: chr26:16720133-16719990 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 62, 0

Show alignments to all cow chromosomes.