Cow genome map
Conread name: | Ss1.1-Lym2-sn01_H04.f.5 |
Conread position: | 1-182 |
Cow position: | chr27:25800547-25800738 (view UCSC Genome Browser custom track) |
Alignm length: | 192 |
Alignm identity: | 140 |
Alignm E-value: | 8e-25 |
Alignm gaps (pig, cow): | 11, 0 |
Conread position: | 2-194 |
Cow position: | chr27:8427512-8427319 (view UCSC Genome Browser custom track) |
Alignm length: | 198 |
Alignm identity: | 141 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 151, 16 |
Conread position: | 2-197 |
Cow position: | chr27:30446741-30446935 (view UCSC Genome Browser custom track) |
Alignm length: | 198 |
Alignm identity: | 137 |
Alignm E-value: | 7e-23 |
Alignm gaps (pig, cow): | 135, 39 |
Conread position: | 2-200 |
Cow position: | chr27:12282341-12282139 (view UCSC Genome Browser custom track) |
Alignm length: | 205 |
Alignm identity: | 143 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 16, 40 |
Conread position: | 2-223 |
Cow position: | chr27:26033867-26034090 (view UCSC Genome Browser custom track) |
Alignm length: | 230 |
Alignm identity: | 161 |
Alignm E-value: | 7e-23 |
Alignm gaps (pig, cow): | 31, 38 |
Conread position: | 3-151 |
Cow position: | chr27:3111934-3112077 (view UCSC Genome Browser custom track) |
Alignm length: | 149 |
Alignm identity: | 112 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 14, 0 |
Conread position: | 3-202 |
Cow position: | chr27:15645138-15644933 (view UCSC Genome Browser custom track) |
Alignm length: | 208 |
Alignm identity: | 149 |
Alignm E-value: | 3e-26 |
Alignm gaps (pig, cow): | 151, 25 |
Conread position: | 4-185 |
Cow position: | chr27:9333321-9333137 (view UCSC Genome Browser custom track) |
Alignm length: | 187 |
Alignm identity: | 133 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 148, 28 |
Conread position: | 4-211 |
Cow position: | chr27:5990398-5990603 (view UCSC Genome Browser custom track) |
Alignm length: | 210 |
Alignm identity: | 143 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 39, 27 |
Conread position: | 5-171 |
Cow position: | chr27:16117510-16117677 (view UCSC Genome Browser custom track) |
Alignm length: | 172 |
Alignm identity: | 135 |
Alignm E-value: | 2e-30 |
Alignm gaps (pig, cow): | 147, 13 |
Conread position: | 6-193 |
Cow position: | chr27:11434814-11434631 (view UCSC Genome Browser custom track) |
Alignm length: | 190 |
Alignm identity: | 134 |
Alignm E-value: | 5e-21 |
Alignm gaps (pig, cow): | 140, 30 |
Conread position: | 6-234 |
Cow position: | chr27:1636431-1636203 (view UCSC Genome Browser custom track) |
Alignm length: | 235 |
Alignm identity: | 161 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 147, 27 |
Conread position: | 8-208 |
Cow position: | chr27:19731181-19731382 (view UCSC Genome Browser custom track) |
Alignm length: | 205 |
Alignm identity: | 145 |
Alignm E-value: | 3e-26 |
Alignm gaps (pig, cow): | 145, 28 |
Conread position: | 9-153 |
Cow position: | chr27:24066023-24065881 (view UCSC Genome Browser custom track) |
Alignm length: | 145 |
Alignm identity: | 107 |
Alignm E-value: | 6e-22 |
Alignm gaps (pig, cow): | 27, 0 |
Conread position: | 9-246 |
Cow position: | chr27:17338453-17338689 (view UCSC Genome Browser custom track) |
Alignm length: | 240 |
Alignm identity: | 157 |
Alignm E-value: | 5e-21 |
Alignm gaps (pig, cow): | 177, 22 |
Conread position: | 10-213 |
Cow position: | chr27:19286719-19286506 (view UCSC Genome Browser custom track) |
Alignm length: | 214 |
Alignm identity: | 146 |
Alignm E-value: | 5e-21 |
Alignm gaps (pig, cow): | 7, 0 |
Conread position: | 11-209 |
Cow position: | chr27:12554899-12555099 (view UCSC Genome Browser custom track) |
Alignm length: | 203 |
Alignm identity: | 145 |
Alignm E-value: | 1e-27 |
Alignm gaps (pig, cow): | 135, 21 |
Conread position: | 18-143 |
Cow position: | chr27:12006041-12006164 (view UCSC Genome Browser custom track) |
Alignm length: | 126 |
Alignm identity: | 97 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 18, 0 |
Conread position: | 18-151 |
Cow position: | chr27:11606246-11606377 (view UCSC Genome Browser custom track) |
Alignm length: | 134 |
Alignm identity: | 102 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 15, 0 |
Conread position: | 18-165 |
Cow position: | chr27:3340286-3340436 (view UCSC Genome Browser custom track) |
Alignm length: | 153 |
Alignm identity: | 114 |
Alignm E-value: | 6e-22 |
Alignm gaps (pig, cow): | 132, 15 |
Conread position: | 18-171 |
Cow position: | chr27:523661-523504 (view UCSC Genome Browser custom track) |
Alignm length: | 160 |
Alignm identity: | 119 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 42, 18 |
Conread position: | 18-171 |
Cow position: | chr27:724184-724028 (view UCSC Genome Browser custom track) |
Alignm length: | 159 |
Alignm identity: | 119 |
Alignm E-value: | 7e-24 |
Alignm gaps (pig, cow): | 132, 18 |
Conread position: | 18-171 |
Cow position: | chr27:791406-791562 (view UCSC Genome Browser custom track) |
Alignm length: | 159 |
Alignm identity: | 118 |
Alignm E-value: | 7e-23 |
Alignm gaps (pig, cow): | 132, 18 |
Conread position: | 18-171 |
Cow position: | chr27:1481533-1481377 (view UCSC Genome Browser custom track) |
Alignm length: | 159 |
Alignm identity: | 119 |
Alignm E-value: | 7e-24 |
Alignm gaps (pig, cow): | 132, 18 |
Conread position: | 18-171 |
Cow position: | chr27:3650121-3649965 (view UCSC Genome Browser custom track) |
Alignm length: | 159 |
Alignm identity: | 119 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 134, 18 |
Conread position: | 18-171 |
Cow position: | chr27:8202360-8202516 (view UCSC Genome Browser custom track) |
Alignm length: | 159 |
Alignm identity: | 121 |
Alignm E-value: | 9e-26 |
Alignm gaps (pig, cow): | 132, 15 |
Conread position: | 18-171 |
Cow position: | chr27:11095169-11095325 (view UCSC Genome Browser custom track) |
Alignm length: | 159 |
Alignm identity: | 119 |
Alignm E-value: | 7e-24 |
Alignm gaps (pig, cow): | 132, 15 |
Conread position: | 18-171 |
Cow position: | chr27:12006788-12006632 (view UCSC Genome Browser custom track) |
Alignm length: | 159 |
Alignm identity: | 119 |
Alignm E-value: | 7e-24 |
Alignm gaps (pig, cow): | 132, 18 |
Conread position: | 18-171 |
Cow position: | chr27:12147532-12147376 (view UCSC Genome Browser custom track) |
Alignm length: | 159 |
Alignm identity: | 119 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 135, 18 |
Conread position: | 18-171 |
Cow position: | chr27:13422524-13422680 (view UCSC Genome Browser custom track) |
Alignm length: | 159 |
Alignm identity: | 118 |
Alignm E-value: | 7e-23 |
Alignm gaps (pig, cow): | 132, 15 |
Conread position: | 18-171 |
Cow position: | chr27:15178744-15178900 (view UCSC Genome Browser custom track) |
Alignm length: | 159 |
Alignm identity: | 119 |
Alignm E-value: | 7e-24 |
Alignm gaps (pig, cow): | 132, 15 |
Conread position: | 18-171 |
Cow position: | chr27:20001176-20001332 (view UCSC Genome Browser custom track) |
Alignm length: | 159 |
Alignm identity: | 123 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 134, 18 |
Conread position: | 18-171 |
Cow position: | chr27:22797019-22797175 (view UCSC Genome Browser custom track) |
Alignm length: | 159 |
Alignm identity: | 120 |
Alignm E-value: | 8e-25 |
Alignm gaps (pig, cow): | 132, 18 |
Conread position: | 18-171 |
Cow position: | chr27:29035742-29035898 (view UCSC Genome Browser custom track) |
Alignm length: | 159 |
Alignm identity: | 121 |
Alignm E-value: | 3e-25 |
Alignm gaps (pig, cow): | 127, 18 |
Conread position: | 18-171 |
Cow position: | chr27:29374266-29374422 (view UCSC Genome Browser custom track) |
Alignm length: | 159 |
Alignm identity: | 119 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 135, 18 |
Conread position: | 18-171 |
Cow position: | chr27:29446465-29446621 (view UCSC Genome Browser custom track) |
Alignm length: | 159 |
Alignm identity: | 119 |
Alignm E-value: | 7e-24 |
Alignm gaps (pig, cow): | 132, 15 |
Conread position: | 18-173 |
Cow position: | chr27:23893974-23893816 (view UCSC Genome Browser custom track) |
Alignm length: | 161 |
Alignm identity: | 121 |
Alignm E-value: | 8e-25 |
Alignm gaps (pig, cow): | 132, 18 |
Conread position: | 18-175 |
Cow position: | chr27:526551-526391 (view UCSC Genome Browser custom track) |
Alignm length: | 163 |
Alignm identity: | 125 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 134, 15 |
Conread position: | 18-175 |
Cow position: | chr27:4768960-4768801 (view UCSC Genome Browser custom track) |
Alignm length: | 162 |
Alignm identity: | 123 |
Alignm E-value: | 3e-26 |
Alignm gaps (pig, cow): | 139, 18 |
Conread position: | 18-176 |
Cow position: | chr27:8187472-8187311 (view UCSC Genome Browser custom track) |
Alignm length: | 164 |
Alignm identity: | 122 |
Alignm E-value: | 7e-24 |
Alignm gaps (pig, cow): | 134, 15 |
Conread position: | 18-185 |
Cow position: | chr27:11651736-11651566 (view UCSC Genome Browser custom track) |
Alignm length: | 173 |
Alignm identity: | 128 |
Alignm E-value: | 9e-26 |
Alignm gaps (pig, cow): | 132, 18 |
Conread position: | 18-194 |
Cow position: | chr27:15100279-15100102 (view UCSC Genome Browser custom track) |
Alignm length: | 180 |
Alignm identity: | 131 |
Alignm E-value: | 9e-26 |
Alignm gaps (pig, cow): | 134, 15 |
Conread position: | 18-200 |
Cow position: | chr27:30306626-30306811 (view UCSC Genome Browser custom track) |
Alignm length: | 189 |
Alignm identity: | 137 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 135, 15 |
Conread position: | 19-194 |
Cow position: | chr27:10384069-10383892 (view UCSC Genome Browser custom track) |
Alignm length: | 180 |
Alignm identity: | 128 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 134, 18 |
Conread position: | 21-178 |
Cow position: | chr27:26598409-26598570 (view UCSC Genome Browser custom track) |
Alignm length: | 165 |
Alignm identity: | 125 |
Alignm E-value: | 7e-24 |
Alignm gaps (pig, cow): | 19, 114 |
Conread position: | 21-200 |
Cow position: | chr27:22400313-22400493 (view UCSC Genome Browser custom track) |
Alignm length: | 186 |
Alignm identity: | 136 |
Alignm E-value: | 6e-22 |
Alignm gaps (pig, cow): | 128, 14 |
Conread position: | 21-240 |
Cow position: | chr27:8429888-8429671 (view UCSC Genome Browser custom track) |
Alignm length: | 226 |
Alignm identity: | 156 |
Alignm E-value: | 5e-21 |
Alignm gaps (pig, cow): | 133, 20 |
Conread position: | 22-171 |
Cow position: | chr27:4982996-4982847 (view UCSC Genome Browser custom track) |
Alignm length: | 152 |
Alignm identity: | 111 |
Alignm E-value: | 5e-21 |
Alignm gaps (pig, cow): | 128, 19 |
Conread position: | 22-185 |
Cow position: | chr27:15871696-15871862 (view UCSC Genome Browser custom track) |
Alignm length: | 169 |
Alignm identity: | 123 |
Alignm E-value: | 7e-23 |
Alignm gaps (pig, cow): | 128, 19 |
Conread position: | 33-185 |
Cow position: | chr27:16030770-16030927 (view UCSC Genome Browser custom track) |
Alignm length: | 158 |
Alignm identity: | 122 |
Alignm E-value: | 4e-28 |
Alignm gaps (pig, cow): | 119, 0 |
Conread position: | 33-194 |
Cow position: | chr27:11481558-11481392 (view UCSC Genome Browser custom track) |
Alignm length: | 167 |
Alignm identity: | 123 |
Alignm E-value: | 3e-25 |
Alignm gaps (pig, cow): | 119, 0 |
Conread position: | 35-185 |
Cow position: | chr27:2557367-2557524 (view UCSC Genome Browser custom track) |
Alignm length: | 158 |
Alignm identity: | 117 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 8, 0 |
Conread position: | 36-171 |
Cow position: | chr27:1030930-1031070 (view UCSC Genome Browser custom track) |
Alignm length: | 141 |
Alignm identity: | 108 |
Alignm E-value: | 7e-23 |
Alignm gaps (pig, cow): | 116, 0 |
Conread position: | 36-171 |
Cow position: | chr27:5106805-5106665 (view UCSC Genome Browser custom track) |
Alignm length: | 141 |
Alignm identity: | 108 |
Alignm E-value: | 7e-23 |
Alignm gaps (pig, cow): | 116, 0 |
Conread position: | 36-178 |
Cow position: | chr27:13182666-13182813 (view UCSC Genome Browser custom track) |
Alignm length: | 148 |
Alignm identity: | 110 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 117, 0 |
Conread position: | 36-187 |
Cow position: | chr27:5853370-5853214 (view UCSC Genome Browser custom track) |
Alignm length: | 158 |
Alignm identity: | 117 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 117, 32 |
Conread position: | 36-191 |
Cow position: | chr27:13198446-13198605 (view UCSC Genome Browser custom track) |
Alignm length: | 161 |
Alignm identity: | 118 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 114, 151 |
Conread position: | 36-191 |
Cow position: | chr27:15312745-15312906 (view UCSC Genome Browser custom track) |
Alignm length: | 162 |
Alignm identity: | 120 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 116, 0 |
Conread position: | 36-194 |
Cow position: | chr27:10579567-10579404 (view UCSC Genome Browser custom track) |
Alignm length: | 164 |
Alignm identity: | 120 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 116, 0 |
Conread position: | 36-194 |
Cow position: | chr27:12190898-12190735 (view UCSC Genome Browser custom track) |
Alignm length: | 164 |
Alignm identity: | 119 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 117, 0 |
Conread position: | 36-194 |
Cow position: | chr27:15508877-15508714 (view UCSC Genome Browser custom track) |
Alignm length: | 164 |
Alignm identity: | 120 |
Alignm E-value: | 7e-24 |
Alignm gaps (pig, cow): | 118, 0 |
Conread position: | 37-185 |
Cow position: | chr27:2001467-2001315 (view UCSC Genome Browser custom track) |
Alignm length: | 154 |
Alignm identity: | 113 |
Alignm E-value: | 5e-21 |
Alignm gaps (pig, cow): | 113, 77 |
Conread position: | 37-185 |
Cow position: | chr27:8959394-8959546 (view UCSC Genome Browser custom track) |
Alignm length: | 154 |
Alignm identity: | 115 |
Alignm E-value: | 7e-23 |
Alignm gaps (pig, cow): | 113, 135 |
Conread position: | 37-194 |
Cow position: | chr27:165298-165459 (view UCSC Genome Browser custom track) |
Alignm length: | 163 |
Alignm identity: | 118 |
Alignm E-value: | 5e-21 |
Alignm gaps (pig, cow): | 115, 27 |
Conread position: | 37-200 |
Cow position: | chr27:27292016-27291851 (view UCSC Genome Browser custom track) |
Alignm length: | 166 |
Alignm identity: | 119 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 158, 0 |
Conread position: | 41-185 |
Cow position: | chr27:13353924-13353776 (view UCSC Genome Browser custom track) |
Alignm length: | 150 |
Alignm identity: | 116 |
Alignm E-value: | 3e-25 |
Alignm gaps (pig, cow): | 111, 78 |
Conread position: | 41-185 |
Cow position: | chr27:19299947-19300096 (view UCSC Genome Browser custom track) |
Alignm length: | 150 |
Alignm identity: | 113 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 111, 0 |
Conread position: | 41-194 |
Cow position: | chr27:1081558-1081711 (view UCSC Genome Browser custom track) |
Alignm length: | 155 |
Alignm identity: | 115 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 109, 23 |
Conread position: | 41-194 |
Cow position: | chr27:1293866-1293708 (view UCSC Genome Browser custom track) |
Alignm length: | 159 |
Alignm identity: | 117 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 111, 0 |
Conread position: | 42-178 |
Cow position: | chr27:26545373-26545232 (view UCSC Genome Browser custom track) |
Alignm length: | 142 |
Alignm identity: | 106 |
Alignm E-value: | 5e-21 |
Alignm gaps (pig, cow): | 110, 0 |
Conread position: | 42-185 |
Cow position: | chr27:19931939-19932087 (view UCSC Genome Browser custom track) |
Alignm length: | 149 |
Alignm identity: | 112 |
Alignm E-value: | 7e-23 |
Alignm gaps (pig, cow): | 111, 0 |
Conread position: | 42-187 |
Cow position: | chr27:19523092-19523243 (view UCSC Genome Browser custom track) |
Alignm length: | 152 |
Alignm identity: | 113 |
Alignm E-value: | 6e-22 |
Alignm gaps (pig, cow): | 110, 0 |
Conread position: | 42-187 |
Cow position: | chr27:26330550-26330399 (view UCSC Genome Browser custom track) |
Alignm length: | 152 |
Alignm identity: | 112 |
Alignm E-value: | 5e-21 |
Alignm gaps (pig, cow): | 110, 0 |
Conread position: | 42-194 |
Cow position: | chr27:12549662-12549819 (view UCSC Genome Browser custom track) |
Alignm length: | 158 |
Alignm identity: | 116 |
Alignm E-value: | 7e-23 |
Alignm gaps (pig, cow): | 110, 0 |
Conread position: | 42-194 |
Cow position: | chr27:15033274-15033430 (view UCSC Genome Browser custom track) |
Alignm length: | 158 |
Alignm identity: | 116 |
Alignm E-value: | 6e-22 |
Alignm gaps (pig, cow): | 110, 77 |
Conread position: | 42-195 |
Cow position: | chr27:18970349-18970191 (view UCSC Genome Browser custom track) |
Alignm length: | 159 |
Alignm identity: | 116 |
Alignm E-value: | 6e-22 |
Alignm gaps (pig, cow): | 112, 0 |
Conread position: | 42-200 |
Cow position: | chr27:21452063-21451901 (view UCSC Genome Browser custom track) |
Alignm length: | 164 |
Alignm identity: | 123 |
Alignm E-value: | 3e-25 |
Alignm gaps (pig, cow): | 111, 37 |
Conread position: | 44-233 |
Cow position: | chr27:8587098-8586901 (view UCSC Genome Browser custom track) |
Alignm length: | 199 |
Alignm identity: | 141 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 91, 185 |
Conread position: | 45-200 |
Cow position: | chr27:3653085-3653242 (view UCSC Genome Browser custom track) |
Alignm length: | 161 |
Alignm identity: | 121 |
Alignm E-value: | 7e-23 |
Alignm gaps (pig, cow): | 107, 140 |
Conread position: | 49-173 |
Cow position: | chr27:16110765-16110636 (view UCSC Genome Browser custom track) |
Alignm length: | 130 |
Alignm identity: | 101 |
Alignm E-value: | 6e-22 |
Alignm gaps (pig, cow): | 103, 0 |
Conread position: | 54-200 |
Cow position: | chr27:14999288-14999438 (view UCSC Genome Browser custom track) |
Alignm length: | 153 |
Alignm identity: | 115 |
Alignm E-value: | 5e-21 |
Alignm gaps (pig, cow): | 100, 69 |
Show alignments to all cow chromosomes.