Cow genome map

Conread name: Ss1.1-Lym2-sn01_H04.f.5

Conread position: 1-182
Cow position: chr27:25800547-25800738 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 140
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 11, 0

Conread position: 2-194
Cow position: chr27:8427512-8427319 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 141
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 151, 16

Conread position: 2-197
Cow position: chr27:30446741-30446935 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 137
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 135, 39

Conread position: 2-200
Cow position: chr27:12282341-12282139 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 143
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 16, 40

Conread position: 2-223
Cow position: chr27:26033867-26034090 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 161
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 31, 38

Conread position: 3-151
Cow position: chr27:3111934-3112077 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 3-202
Cow position: chr27:15645138-15644933 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 149
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 151, 25

Conread position: 4-185
Cow position: chr27:9333321-9333137 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 133
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 148, 28

Conread position: 4-211
Cow position: chr27:5990398-5990603 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 143
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 39, 27

Conread position: 5-171
Cow position: chr27:16117510-16117677 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 135
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 147, 13

Conread position: 6-193
Cow position: chr27:11434814-11434631 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 134
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 140, 30

Conread position: 6-234
Cow position: chr27:1636431-1636203 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 161
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 147, 27

Conread position: 8-208
Cow position: chr27:19731181-19731382 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 145
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 145, 28

Conread position: 9-153
Cow position: chr27:24066023-24065881 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 107
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 9-246
Cow position: chr27:17338453-17338689 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 157
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 177, 22

Conread position: 10-213
Cow position: chr27:19286719-19286506 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 146
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 7, 0

Conread position: 11-209
Cow position: chr27:12554899-12555099 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 145
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 135, 21

Conread position: 18-143
Cow position: chr27:12006041-12006164 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 18-151
Cow position: chr27:11606246-11606377 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 18-165
Cow position: chr27:3340286-3340436 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 132, 15

Conread position: 18-171
Cow position: chr27:523661-523504 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 42, 18

Conread position: 18-171
Cow position: chr27:724184-724028 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 132, 18

Conread position: 18-171
Cow position: chr27:791406-791562 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 132, 18

Conread position: 18-171
Cow position: chr27:1481533-1481377 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 132, 18

Conread position: 18-171
Cow position: chr27:3650121-3649965 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 134, 18

Conread position: 18-171
Cow position: chr27:8202360-8202516 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 132, 15

Conread position: 18-171
Cow position: chr27:11095169-11095325 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 132, 15

Conread position: 18-171
Cow position: chr27:12006788-12006632 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 132, 18

Conread position: 18-171
Cow position: chr27:12147532-12147376 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 135, 18

Conread position: 18-171
Cow position: chr27:13422524-13422680 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 132, 15

Conread position: 18-171
Cow position: chr27:15178744-15178900 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 132, 15

Conread position: 18-171
Cow position: chr27:20001176-20001332 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 134, 18

Conread position: 18-171
Cow position: chr27:22797019-22797175 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 132, 18

Conread position: 18-171
Cow position: chr27:29035742-29035898 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 127, 18

Conread position: 18-171
Cow position: chr27:29374266-29374422 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 135, 18

Conread position: 18-171
Cow position: chr27:29446465-29446621 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 132, 15

Conread position: 18-173
Cow position: chr27:23893974-23893816 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 132, 18

Conread position: 18-175
Cow position: chr27:526551-526391 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 134, 15

Conread position: 18-175
Cow position: chr27:4768960-4768801 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 139, 18

Conread position: 18-176
Cow position: chr27:8187472-8187311 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 134, 15

Conread position: 18-185
Cow position: chr27:11651736-11651566 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 132, 18

Conread position: 18-194
Cow position: chr27:15100279-15100102 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 134, 15

Conread position: 18-200
Cow position: chr27:30306626-30306811 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 137
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 135, 15

Conread position: 19-194
Cow position: chr27:10384069-10383892 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 128
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 134, 18

Conread position: 21-178
Cow position: chr27:26598409-26598570 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 19, 114

Conread position: 21-200
Cow position: chr27:22400313-22400493 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 136
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 128, 14

Conread position: 21-240
Cow position: chr27:8429888-8429671 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 156
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 133, 20

Conread position: 22-171
Cow position: chr27:4982996-4982847 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 128, 19

Conread position: 22-185
Cow position: chr27:15871696-15871862 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 128, 19

Conread position: 33-185
Cow position: chr27:16030770-16030927 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 119, 0

Conread position: 33-194
Cow position: chr27:11481558-11481392 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 119, 0

Conread position: 35-185
Cow position: chr27:2557367-2557524 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 8, 0

Conread position: 36-171
Cow position: chr27:1030930-1031070 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 116, 0

Conread position: 36-171
Cow position: chr27:5106805-5106665 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 116, 0

Conread position: 36-178
Cow position: chr27:13182666-13182813 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 117, 0

Conread position: 36-187
Cow position: chr27:5853370-5853214 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 117, 32

Conread position: 36-191
Cow position: chr27:13198446-13198605 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 114, 151

Conread position: 36-191
Cow position: chr27:15312745-15312906 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 116, 0

Conread position: 36-194
Cow position: chr27:10579567-10579404 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 116, 0

Conread position: 36-194
Cow position: chr27:12190898-12190735 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 117, 0

Conread position: 36-194
Cow position: chr27:15508877-15508714 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 118, 0

Conread position: 37-185
Cow position: chr27:2001467-2001315 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 113, 77

Conread position: 37-185
Cow position: chr27:8959394-8959546 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 113, 135

Conread position: 37-194
Cow position: chr27:165298-165459 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 115, 27

Conread position: 37-200
Cow position: chr27:27292016-27291851 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 119
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 158, 0

Conread position: 41-185
Cow position: chr27:13353924-13353776 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 111, 78

Conread position: 41-185
Cow position: chr27:19299947-19300096 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 111, 0

Conread position: 41-194
Cow position: chr27:1081558-1081711 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 109, 23

Conread position: 41-194
Cow position: chr27:1293866-1293708 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 111, 0

Conread position: 42-178
Cow position: chr27:26545373-26545232 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 106
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 110, 0

Conread position: 42-185
Cow position: chr27:19931939-19932087 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 111, 0

Conread position: 42-187
Cow position: chr27:19523092-19523243 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 110, 0

Conread position: 42-187
Cow position: chr27:26330550-26330399 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 110, 0

Conread position: 42-194
Cow position: chr27:12549662-12549819 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 110, 0

Conread position: 42-194
Cow position: chr27:15033274-15033430 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 110, 77

Conread position: 42-195
Cow position: chr27:18970349-18970191 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 112, 0

Conread position: 42-200
Cow position: chr27:21452063-21451901 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 111, 37

Conread position: 44-233
Cow position: chr27:8587098-8586901 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 141
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 91, 185

Conread position: 45-200
Cow position: chr27:3653085-3653242 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 107, 140

Conread position: 49-173
Cow position: chr27:16110765-16110636 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 103, 0

Conread position: 54-200
Cow position: chr27:14999288-14999438 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 100, 69

Show alignments to all cow chromosomes.