Cow genome map

Conread name: Ss1.1-Lym2-sn01_H04.f.5

Conread position: 1-133
Cow position: chrX:3628242-3628114 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 16, 0

Conread position: 1-151
Cow position: chrX:4622485-4622633 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 1-152
Cow position: chrX:23382716-23382864 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 144, 34

Conread position: 2-148
Cow position: chrX:3582651-3582508 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 25, 0

Conread position: 2-185
Cow position: chrX:2324174-2323989 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 135
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 148, 39

Conread position: 2-185
Cow position: chrX:24769389-24769575 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 139
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 150, 33

Conread position: 2-194
Cow position: chrX:12102497-12102692 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 140
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 150, 33

Conread position: 2-200
Cow position: chrX:19589731-19589929 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 154
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 121, 34

Conread position: 2-200
Cow position: chrX:20504114-20503910 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 149
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 148, 39

Conread position: 2-200
Cow position: chrX:20976579-20976782 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 144
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 127, 38

Conread position: 2-200
Cow position: chrX:38840099-38839901 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 143
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 152, 15

Conread position: 2-211
Cow position: chrX:24923321-24923109 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 157
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 38, 31

Conread position: 2-211
Cow position: chrX:27646879-27646672 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 150, 37

Conread position: 3-147
Cow position: chrX:21031382-21031242 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 15, 0

Conread position: 3-178
Cow position: chrX:37960069-37959897 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 129, 14

Conread position: 3-182
Cow position: chrX:37544452-37544264 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 135
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 11, 85

Conread position: 3-185
Cow position: chrX:4501889-4501709 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 138
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 98, 9

Conread position: 3-189
Cow position: chrX:20970383-20970197 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 136
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 151, 25

Conread position: 3-197
Cow position: chrX:516979-516782 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 145
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 5, 38

Conread position: 3-200
Cow position: chrX:677626-677829 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 151
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 33, 19

Conread position: 3-230
Cow position: chrX:15345333-15345118 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 159
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 133, 31

Conread position: 4-165
Cow position: chrX:29055385-29055224 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 117
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 133, 37

Conread position: 4-194
Cow position: chrX:25280358-25280547 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 140
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 150, 32

Conread position: 4-194
Cow position: chrX:27407996-27408188 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 138
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 150, 32

Conread position: 4-210
Cow position: chrX:5934643-5934438 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 154
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 148, 32

Conread position: 4-216
Cow position: chrX:6193862-6194071 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 147
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 186, 31

Conread position: 4-286
Cow position: chrX:20564233-20564492 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 202
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 152, 31

Conread position: 5-176
Cow position: chrX:25451787-25451615 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 145, 36

Conread position: 5-189
Cow position: chrX:28820201-28820014 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 140
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 149, 42

Conread position: 5-200
Cow position: chrX:17663454-17663648 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 134
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 176, 27

Conread position: 5-222
Cow position: chrX:1960681-1960467 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 149
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 38, 28

Conread position: 5-222
Cow position: chrX:20869769-20869988 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 160
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 122, 31

Conread position: 5-234
Cow position: chrX:37681848-37682081 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 167
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 143, 13

Conread position: 6-150
Cow position: chrX:4177283-4177141 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 107
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 6-177
Cow position: chrX:14267741-14267915 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 44, 16

Conread position: 6-185
Cow position: chrX:12145566-12145384 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 144, 27

Conread position: 6-194
Cow position: chrX:6493196-6493008 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 146, 35

Conread position: 6-194
Cow position: chrX:29942614-29942429 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 129
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 35, 0

Conread position: 6-199
Cow position: chrX:23522035-23522222 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 139
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 128, 12

Conread position: 6-216
Cow position: chrX:40827280-40827492 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 150
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 147, 34

Conread position: 7-165
Cow position: chrX:34206538-34206380 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 116
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 97, 34

Conread position: 7-171
Cow position: chrX:4343214-4343047 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 145, 26

Conread position: 7-171
Cow position: chrX:11145874-11146037 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 145, 26

Conread position: 7-171
Cow position: chrX:22076879-22077046 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 145, 26

Conread position: 7-171
Cow position: chrX:32643949-32643782 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 146, 29

Conread position: 7-177
Cow position: chrX:6372644-6372470 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 145, 26

Conread position: 7-185
Cow position: chrX:2103868-2103687 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 132
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 145, 25

Conread position: 7-185
Cow position: chrX:2932257-2932438 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 133
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 145, 26

Conread position: 7-188
Cow position: chrX:23587262-23587079 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 138
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 145, 29

Conread position: 7-199
Cow position: chrX:22963348-22963541 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 147
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 74, 21

Conread position: 7-200
Cow position: chrX:39558903-39559093 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 134
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 61, 12

Conread position: 7-211
Cow position: chrX:8421709-8421514 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 150
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 150, 23

Conread position: 7-216
Cow position: chrX:20801236-20801030 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 146
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 192, 33

Conread position: 7-227
Cow position: chrX:17902040-17902257 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 165
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 146, 26

Conread position: 8-152
Cow position: chrX:24529069-24528930 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 8-185
Cow position: chrX:18898187-18898367 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 145, 27

Conread position: 8-193
Cow position: chrX:23829152-23829335 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 131, 28

Conread position: 12-211
Cow position: chrX:16553250-16553050 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 139
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 133, 21

Conread position: 13-200
Cow position: chrX:1550422-1550235 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 136
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 139, 23

Conread position: 14-188
Cow position: chrX:3952308-3952133 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 140, 22

Conread position: 14-222
Cow position: chrX:25359633-25359430 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 147
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 169, 22

Conread position: 16-185
Cow position: chrX:38151142-38150970 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 136, 25

Conread position: 16-200
Cow position: chrX:33836948-33836768 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 136, 19

Conread position: 16-203
Cow position: chrX:37684063-37684252 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 145
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 136, 12

Conread position: 17-152
Cow position: chrX:3145456-3145323 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 17-185
Cow position: chrX:2559507-2559678 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 135, 16

Conread position: 17-185
Cow position: chrX:12360341-12360170 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 135, 16

Conread position: 17-188
Cow position: chrX:20998823-20998998 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 87, 19

Conread position: 17-196
Cow position: chrX:16035058-16035240 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 133
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 19, 29

Conread position: 17-200
Cow position: chrX:6202960-6202774 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 132
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 139, 16

Conread position: 17-200
Cow position: chrX:31728916-31728730 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 137
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 101, 26

Conread position: 17-200
Cow position: chrX:40365290-40365475 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 139
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 137, 24

Conread position: 17-223
Cow position: chrX:2382920-2382708 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 150
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 117, 24

Conread position: 17-243
Cow position: chrX:22812515-22812290 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 160
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 136, 24

Conread position: 18-151
Cow position: chrX:5408507-5408376 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 15, 0

Conread position: 18-151
Cow position: chrX:18024492-18024361 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 15, 0

Conread position: 18-151
Cow position: chrX:28588423-28588292 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 101
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 18-151
Cow position: chrX:30965553-30965422 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 101
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 18-165
Cow position: chrX:30752227-30752077 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 134, 18

Conread position: 18-170
Cow position: chrX:16478367-16478212 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 134, 15

Conread position: 18-171
Cow position: chrX:2293148-2293304 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 132, 18

Conread position: 18-171
Cow position: chrX:2813030-2813186 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 134, 18

Conread position: 18-171
Cow position: chrX:3081679-3081835 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 134, 22

Conread position: 18-171
Cow position: chrX:5406512-5406356 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 131, 15

Conread position: 18-171
Cow position: chrX:5892680-5892524 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 132, 18

Conread position: 18-171
Cow position: chrX:6454148-6453993 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 127, 15

Conread position: 18-171
Cow position: chrX:7119192-7119348 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 132, 15

Conread position: 18-171
Cow position: chrX:7486316-7486160 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 134, 18

Conread position: 18-171
Cow position: chrX:8641240-8641084 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 134, 15

Conread position: 18-171
Cow position: chrX:9011779-9011623 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 134, 15

Conread position: 18-171
Cow position: chrX:10465237-10465081 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 135, 18

Conread position: 18-171
Cow position: chrX:11408882-11409038 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 135, 18

Conread position: 18-171
Cow position: chrX:12001695-12001851 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 132, 15

Conread position: 18-171
Cow position: chrX:13030759-13030915 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 132, 18

Conread position: 18-171
Cow position: chrX:14049742-14049898 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 132, 15

Conread position: 18-171
Cow position: chrX:15346517-15346673 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 132, 15

Conread position: 18-171
Cow position: chrX:19109589-19109745 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 127, 15

Conread position: 18-171
Cow position: chrX:19399230-19399074 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 117, 15

Conread position: 18-171
Cow position: chrX:19473708-19473863 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 135, 15

Conread position: 18-171
Cow position: chrX:20021029-20020875 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 134, 18

Conread position: 18-171
Cow position: chrX:26275590-26275434 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 134, 18

Conread position: 18-171
Cow position: chrX:26617469-26617625 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 132, 18

Conread position: 18-171
Cow position: chrX:28313877-28313721 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 132, 18

Conread position: 18-171
Cow position: chrX:30196749-30196593 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 134, 15

Conread position: 18-171
Cow position: chrX:30199540-30199696 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 134, 15

Conread position: 18-171
Cow position: chrX:31978389-31978545 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 134, 22

Conread position: 18-171
Cow position: chrX:32039390-32039542 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 132, 15

Conread position: 18-171
Cow position: chrX:33763796-33763640 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 132, 15

Conread position: 18-171
Cow position: chrX:35533303-35533150 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 134, 15

Conread position: 18-171
Cow position: chrX:36195544-36195388 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 132, 15

Conread position: 18-171
Cow position: chrX:36479183-36479339 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 135, 15

Conread position: 18-171
Cow position: chrX:36729836-36729680 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 132, 17

Conread position: 18-171
Cow position: chrX:37852591-37852435 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 134, 15

Conread position: 18-171
Cow position: chrX:39730687-39730843 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 132, 15

Conread position: 18-171
Cow position: chrX:41886280-41886124 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 135, 18

Conread position: 18-173
Cow position: chrX:3096303-3096459 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 134, 18

Conread position: 18-173
Cow position: chrX:22521769-22521927 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 134, 15

Conread position: 18-175
Cow position: chrX:30159543-30159699 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 132, 18

Conread position: 18-177
Cow position: chrX:23135030-23134869 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 134, 15

Conread position: 18-178
Cow position: chrX:15114123-15113961 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 126
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 134, 22

Conread position: 18-185
Cow position: chrX:9641980-9642150 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 134, 15

Conread position: 18-185
Cow position: chrX:10923119-10923289 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 132, 18

Conread position: 18-185
Cow position: chrX:11358613-11358783 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 132, 15

Conread position: 18-185
Cow position: chrX:16465752-16465583 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 134, 22

Conread position: 18-185
Cow position: chrX:18222865-18222695 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 134, 15

Conread position: 18-185
Cow position: chrX:18451627-18451797 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 132, 18

Conread position: 18-185
Cow position: chrX:22612837-22612667 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 134, 15

Conread position: 18-185
Cow position: chrX:28706554-28706384 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 132, 18

Conread position: 18-185
Cow position: chrX:30816817-30816987 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 134, 18

Conread position: 18-185
Cow position: chrX:30825100-30824930 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 132, 18

Conread position: 18-185
Cow position: chrX:32331083-32330913 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 127, 15

Conread position: 18-185
Cow position: chrX:34719965-34719795 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 132, 18

Conread position: 18-185
Cow position: chrX:36535283-36535453 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 134, 17

Conread position: 18-185
Cow position: chrX:37080067-37080237 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 134, 15

Conread position: 18-185
Cow position: chrX:39185625-39185455 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 132, 15

Conread position: 18-185
Cow position: chrX:45236918-45236748 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 132, 22

Conread position: 18-187
Cow position: chrX:27422829-27423004 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 45, 22

Conread position: 18-187
Cow position: chrX:30172255-30172428 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 134, 18

Conread position: 18-191
Cow position: chrX:5866598-5866427 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 124
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 15, 0

Conread position: 18-191
Cow position: chrX:16086671-16086842 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 15, 0

Conread position: 18-194
Cow position: chrX:7096910-7096731 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 134, 14

Conread position: 18-194
Cow position: chrX:10932125-10931946 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 134, 22

Conread position: 18-194
Cow position: chrX:34761518-34761339 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 134, 22

Conread position: 18-194
Cow position: chrX:39560200-39560379 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 134, 14

Conread position: 18-194
Cow position: chrX:46297112-46296933 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 134, 22

Conread position: 18-200
Cow position: chrX:15621080-15621262 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 134, 15

Conread position: 18-200
Cow position: chrX:27759159-27758977 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 127, 15

Conread position: 18-200
Cow position: chrX:28518268-28518450 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 138
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 134, 12

Conread position: 18-200
Cow position: chrX:34519178-34518996 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 138
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 134, 15

Conread position: 18-200
Cow position: chrX:38330834-38330652 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 135
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 133, 15

Conread position: 18-200
Cow position: chrX:38961394-38961580 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 141
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 134, 15

Conread position: 18-215
Cow position: chrX:26230064-26230260 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 142
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 116, 15

Conread position: 18-227
Cow position: chrX:13928299-13928507 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 154
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 135, 15

Conread position: 18-231
Cow position: chrX:5331985-5332202 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 156
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 132, 15

Conread position: 18-231
Cow position: chrX:5334367-5334584 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 156
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 132, 15

Conread position: 18-231
Cow position: chrX:24509319-24509098 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 157
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 132, 15

Conread position: 18-231
Cow position: chrX:29225930-29225709 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 158
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 132, 18

Conread position: 19-145
Cow position: chrX:19437634-19437760 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 115, 22

Conread position: 19-185
Cow position: chrX:22493458-22493289 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 133, 13

Conread position: 19-194
Cow position: chrX:22811340-22811163 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 133, 22

Conread position: 21-151
Cow position: chrX:24735393-24735264 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 84, 19

Conread position: 21-187
Cow position: chrX:23341545-23341712 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 131, 11

Conread position: 21-194
Cow position: chrX:23451996-23452172 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 132, 11

Conread position: 21-195
Cow position: chrX:14162641-14162464 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 128
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 131, 11

Conread position: 25-185
Cow position: chrX:3417690-3417855 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 127, 0

Conread position: 25-210
Cow position: chrX:37364169-37363978 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 133
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 129, 0

Conread position: 26-194
Cow position: chrX:40788578-40788407 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 124
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 111, 15

Conread position: 26-198
Cow position: chrX:21206252-21206424 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 7, 13

Conread position: 29-142
Cow position: chrX:7316423-7316311 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 72, 0

Conread position: 29-200
Cow position: chrX:21592730-21592561 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 124, 54

Conread position: 30-151
Cow position: chrX:11588242-11588365 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 31-200
Cow position: chrX:31372905-31372732 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 135
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 12, 149

Conread position: 32-243
Cow position: chrX:42540039-42539823 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 153
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 120, 146

Conread position: 33-171
Cow position: chrX:13971800-13971943 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 119, 0

Conread position: 33-185
Cow position: chrX:18194129-18193972 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 120, 0

Conread position: 34-186
Cow position: chrX:2500193-2500350 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 118, 0

Conread position: 34-194
Cow position: chrX:323353-323187 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 118, 0

Conread position: 35-187
Cow position: chrX:29849193-29849350 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 117, 8

Conread position: 35-197
Cow position: chrX:9854712-9854548 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 116
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 36-151
Cow position: chrX:10427972-10427857 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 36-171
Cow position: chrX:362017-362157 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 114, 0

Conread position: 36-171
Cow position: chrX:5123923-5124063 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 117, 0

Conread position: 36-171
Cow position: chrX:8529976-8529836 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 116, 0

Conread position: 36-171
Cow position: chrX:20888173-20888309 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 114, 0

Conread position: 36-171
Cow position: chrX:25289243-25289383 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 116, 0

Conread position: 36-171
Cow position: chrX:29841733-29841873 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 114, 0

Conread position: 36-172
Cow position: chrX:42120739-42120598 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 116, 0

Conread position: 36-176
Cow position: chrX:30822020-30821875 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 116, 0

Conread position: 36-178
Cow position: chrX:40224809-40224953 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 116, 21

Conread position: 36-185
Cow position: chrX:3361257-3361103 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 116, 0

Conread position: 36-185
Cow position: chrX:5306037-5305883 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 101, 0

Conread position: 36-185
Cow position: chrX:9169178-9169332 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 116, 0

Conread position: 36-185
Cow position: chrX:14598282-14598128 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 116, 0

Conread position: 36-185
Cow position: chrX:15260183-15260337 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 116, 0

Conread position: 36-185
Cow position: chrX:18656369-18656523 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 116, 0

Conread position: 36-185
Cow position: chrX:20032395-20032549 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 116, 0

Conread position: 36-185
Cow position: chrX:24467689-24467842 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 116, 136

Conread position: 36-185
Cow position: chrX:26760132-26760286 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 116, 0

Conread position: 36-185
Cow position: chrX:26974346-26974192 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 116, 0

Conread position: 36-185
Cow position: chrX:27318667-27318513 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 116, 0

Conread position: 36-185
Cow position: chrX:29912775-29912621 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 116, 0

Conread position: 36-185
Cow position: chrX:38014530-38014376 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 116, 0

Conread position: 36-185
Cow position: chrX:39548835-39548681 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 116, 0

Conread position: 36-186
Cow position: chrX:8434768-8434922 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 116, 14

Conread position: 36-187
Cow position: chrX:30053032-30053187 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 114, 153

Conread position: 36-194
Cow position: chrX:160864-160705 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 117, 149

Conread position: 36-194
Cow position: chrX:12097731-12097568 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 114, 0

Conread position: 36-194
Cow position: chrX:20742423-20742265 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 114, 75

Conread position: 36-194
Cow position: chrX:22600977-22601138 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 7, 48

Conread position: 36-194
Cow position: chrX:23572380-23572543 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 116, 0

Conread position: 36-194
Cow position: chrX:25459203-25459365 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 112, 0

Conread position: 36-194
Cow position: chrX:30163802-30163965 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 117, 0

Conread position: 36-196
Cow position: chrX:31496172-31496012 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 113
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 36-197
Cow position: chrX:12996419-12996583 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 108, 136

Conread position: 36-200
Cow position: chrX:15340421-15340588 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 112, 147

Conread position: 36-200
Cow position: chrX:22888094-22887929 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 114, 74

Conread position: 36-200
Cow position: chrX:24109171-24109335 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 114, 147

Conread position: 36-200
Cow position: chrX:38051996-38052162 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 114, 142

Conread position: 36-200
Cow position: chrX:40384482-40384315 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 98, 143

Conread position: 36-215
Cow position: chrX:23280445-23280264 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 116, 149

Conread position: 36-216
Cow position: chrX:4750936-4751122 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 131
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 117, 0

Conread position: 36-223
Cow position: chrX:46093389-46093575 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 133
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 161, 93

Conread position: 37-151
Cow position: chrX:1576828-1576942 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 37-151
Cow position: chrX:27594745-27594859 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 90
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 37-171
Cow position: chrX:5646669-5646808 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 113, 0

Conread position: 37-171
Cow position: chrX:13206387-13206248 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 115, 0

Conread position: 37-171
Cow position: chrX:18488279-18488418 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 115, 0

Conread position: 37-171
Cow position: chrX:22564252-22564391 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 112, 0

Conread position: 37-171
Cow position: chrX:24320837-24320976 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 115, 0

Conread position: 37-171
Cow position: chrX:29907767-29907906 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 115, 0

Conread position: 37-171
Cow position: chrX:34253664-34253525 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 105
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 113, 0

Conread position: 37-185
Cow position: chrX:5280418-5280571 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 115, 0

Conread position: 37-185
Cow position: chrX:6581369-6581216 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 115, 0

Conread position: 37-185
Cow position: chrX:12458132-12457980 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 116, 27

Conread position: 37-185
Cow position: chrX:14458732-14458885 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 115, 0

Conread position: 37-185
Cow position: chrX:28503771-28503618 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 115, 0

Conread position: 37-187
Cow position: chrX:19609111-19608957 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 115, 152

Conread position: 37-188
Cow position: chrX:18462540-18462696 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 115, 0

Conread position: 37-194
Cow position: chrX:5289251-5289413 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 115, 0

Conread position: 37-200
Cow position: chrX:9128491-9128326 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 115, 148

Conread position: 40-171
Cow position: chrX:15091337-15091473 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 110, 0

Conread position: 40-186
Cow position: chrX:21768236-21768085 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 112, 0

Conread position: 40-210
Cow position: chrX:28133546-28133371 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 126
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 110, 74

Conread position: 41-144
Cow position: chrX:14030449-14030346 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 84
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 41-165
Cow position: chrX:14462740-14462615 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 96
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 109, 0

Conread position: 41-171
Cow position: chrX:2048543-2048408 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 111, 0

Conread position: 41-171
Cow position: chrX:14781915-14782049 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 112, 93

Conread position: 41-171
Cow position: chrX:17994890-17994755 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 110, 0

Conread position: 41-171
Cow position: chrX:26506510-26506645 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 111, 0

Conread position: 41-171
Cow position: chrX:29169910-29170045 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 110, 0

Conread position: 41-171
Cow position: chrX:40580732-40580867 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 111, 0

Conread position: 41-177
Cow position: chrX:28752909-28753050 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 111, 0

Conread position: 41-178
Cow position: chrX:11976015-11976157 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 111, 0

Conread position: 41-178
Cow position: chrX:16279083-16278941 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 111, 0

Conread position: 41-178
Cow position: chrX:23986681-23986539 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 111, 0

Conread position: 41-185
Cow position: chrX:2160196-2160047 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 109, 0

Conread position: 41-185
Cow position: chrX:3464645-3464795 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 111, 0

Conread position: 41-185
Cow position: chrX:5320288-5320436 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 111, 26

Conread position: 41-185
Cow position: chrX:10444984-10445133 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 110, 0

Conread position: 41-185
Cow position: chrX:16285642-16285493 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 111, 0

Conread position: 41-185
Cow position: chrX:17055000-17054851 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 111, 0

Conread position: 41-185
Cow position: chrX:21686050-21685901 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 111, 0

Conread position: 41-194
Cow position: chrX:16040250-16040406 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 111, 0

Conread position: 41-194
Cow position: chrX:16526220-16526063 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 111, 54

Conread position: 41-194
Cow position: chrX:20953963-20953806 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 111, 9

Conread position: 41-194
Cow position: chrX:39713982-39713824 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 111, 0

Conread position: 41-200
Cow position: chrX:24173734-24173891 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 108, 131

Conread position: 42-171
Cow position: chrX:31604918-31605052 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 108, 0

Conread position: 42-176
Cow position: chrX:30060318-30060179 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 105
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 110, 0

Conread position: 42-185
Cow position: chrX:18950306-18950454 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 110, 0

Conread position: 42-185
Cow position: chrX:21582872-21582725 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 111, 98

Conread position: 42-185
Cow position: chrX:30228684-30228832 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 110, 0

Conread position: 42-185
Cow position: chrX:30455192-30455340 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 111, 0

Conread position: 42-185
Cow position: chrX:41156741-41156593 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 110, 0

Conread position: 42-194
Cow position: chrX:12179109-12178952 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 114
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 110, 0

Conread position: 42-194
Cow position: chrX:16782710-16782553 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 110, 0

Conread position: 42-194
Cow position: chrX:29722646-29722492 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 111, 0

Conread position: 42-194
Cow position: chrX:30143854-30144011 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 114
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 110, 0

Conread position: 42-194
Cow position: chrX:40545192-40545349 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 115
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 109, 0

Conread position: 42-198
Cow position: chrX:12033493-12033649 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 105, 126

Conread position: 42-199
Cow position: chrX:23974013-23974172 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 108, 136

Conread position: 42-200
Cow position: chrX:6543695-6543532 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 111, 147

Conread position: 42-200
Cow position: chrX:19657927-19657767 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 116
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 139, 0

Conread position: 42-200
Cow position: chrX:41791282-41791445 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 107, 0

Conread position: 42-234
Cow position: chrX:37885910-37886106 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 140
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 112, 63

Conread position: 42-242
Cow position: chrX:28156965-28156761 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 143
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 111, 146

Conread position: 43-190
Cow position: chrX:10146238-10146390 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 110, 0

Conread position: 44-188
Cow position: chrX:36250436-36250580 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 109, 42

Conread position: 44-211
Cow position: chrX:7747920-7748091 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 101, 37

Conread position: 45-171
Cow position: chrX:37816018-37815887 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 107, 0

Conread position: 45-210
Cow position: chrX:26622213-26622376 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 117
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 129, 0

Conread position: 46-185
Cow position: chrX:24413456-24413312 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 106, 0

Conread position: 48-206
Cow position: chrX:22281522-22281683 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 111, 0

Conread position: 49-194
Cow position: chrX:7444330-7444180 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 103, 0

Conread position: 49-194
Cow position: chrX:39292795-39292945 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 103, 0

Conread position: 51-225
Cow position: chrX:27385514-27385692 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 103, 7

Conread position: 58-194
Cow position: chrX:24588322-24588463 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 94, 0

Conread position: 58-216
Cow position: chrX:17097869-17098035 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 96, 28

Show alignments to all cow chromosomes.