Cow genome map


           Conread name:
           Ss1.1-Lym2-sn04_H10.f.5
        

               Conread position:
               72-229
               

               Cow position:
               chr28:33743494-33743651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               144
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               226-371
               

               Cow position:
               chr28:33744863-33745008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               139
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               361-457
               

               Cow position:
               chr28:33745177-33745273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               97
               

               Alignm identity:
               90
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               456-565
               

               Cow position:
               chr28:33745553-33745662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               110
               

               Alignm identity:
               93
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               567-656
               

               Cow position:
               chr28:33746218-33746307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               90
               

               Alignm identity:
               83
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               652-800
               

               Cow position:
               chr28:33746833-33746981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               129
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               799-1803
               

               Cow position:
               chr28:33747954-33748976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               1023
               

               Alignm identity:
               905
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               280, 0
               

               Conread position:
               1801-1943
               

               Cow position:
               chr28:33749373-33749515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               133
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1936-3576
               

               Cow position:
               chr28:33749850-33751500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               1692
               

               Alignm identity:
               1374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 26
               

               Conread position:
               2916-3503
               

               Cow position:
               chr28:34242639-34242044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               609
               

               Alignm identity:
               506
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               172, 202
               
Show alignments to all cow chromosomes.