Cow genome map

Conread name: Ss1.1-Lym2-sn29_A08.f.5

Conread position: 468-824
Cow position: chr26:32553971-32553604 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 239
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 24, 150

Conread position: 500-780
Cow position: chr26:7314850-7314586 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 203
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 265, 52

Conread position: 501-828
Cow position: chr26:13020898-13021225 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 17

Conread position: 502-825
Cow position: chr26:12964459-12964773 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 106

Conread position: 503-760
Cow position: chr26:33242129-33241877 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 0

Conread position: 505-820
Cow position: chr26:26293963-26294268 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 209
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 47, 58

Conread position: 505-828
Cow position: chr26:677744-678059 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 0

Conread position: 506-772
Cow position: chr26:34154385-34154108 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 186
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 58, 0

Conread position: 506-818
Cow position: chr26:31605648-31605336 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 220
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 71, 52

Conread position: 506-824
Cow position: chr26:25394260-25393955 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 222
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 9, 36

Conread position: 507-744
Cow position: chr26:25197087-25197313 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 161
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 66, 0

Conread position: 507-749
Cow position: chr26:33524849-33525096 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 170
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 55, 26

Conread position: 513-756
Cow position: chr26:107249-107016 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 174
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 141, 26

Conread position: 514-825
Cow position: chr26:14175501-14175202 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 223
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 287, 23

Conread position: 517-772
Cow position: chr26:13875272-13875018 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 180
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 117, 55

Conread position: 517-781
Cow position: chr26:7212359-7212621 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 188
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 28, 76

Conread position: 517-824
Cow position: chr26:19774070-19774377 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 211
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 124, 104

Conread position: 519-774
Cow position: chr26:34581016-34580778 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 178
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 54, 0

Conread position: 520-764
Cow position: chr26:6338017-6337776 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 171
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 51, 107

Conread position: 577-797
Cow position: chr26:32863501-32863717 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 153
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 189, 34

Conread position: 577-828
Cow position: chr26:9104111-9104359 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 164
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 20, 45

Conread position: 586-820
Cow position: chr26:23582785-23583018 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 164
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 39, 0

Conread position: 589-800
Cow position: chr26:28423442-28423234 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 146
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 33, 0

Conread position: 591-814
Cow position: chr26:19446286-19446059 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 175
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 180, 25

Conread position: 593-814
Cow position: chr26:13802265-13802047 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 151
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 115, 0

Conread position: 593-814
Cow position: chr26:26950304-26950518 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 157
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 174, 39

Conread position: 593-820
Cow position: chr26:22892291-22892516 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 163
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 169, 212

Conread position: 593-820
Cow position: chr26:24240831-24240604 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 167
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 170, 29

Conread position: 594-795
Cow position: chr26:32652582-32652781 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 146
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 14, 18

Conread position: 595-820
Cow position: chr26:23671567-23671342 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 151
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 71, 25

Conread position: 596-812
Cow position: chr26:20824969-20825173 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 151
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 80, 0

Conread position: 596-829
Cow position: chr26:23315921-23315689 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 172
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 90, 26

Conread position: 599-757
Cow position: chr26:13292667-13292509 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 111
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 599-790
Cow position: chr26:5836671-5836862 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 135
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 26, 171

Conread position: 599-824
Cow position: chr26:8811275-8811054 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 157
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 37, 59

Conread position: 599-827
Cow position: chr26:647576-647803 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 176
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 27, 115

Conread position: 599-828
Cow position: chr26:19110330-19110104 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 161
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 26, 0

Conread position: 599-828
Cow position: chr26:23924998-23924768 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 225

Conread position: 599-851
Cow position: chr26:8307380-8307626 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 183
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 231, 165

Conread position: 601-760
Cow position: chr26:11875075-11875233 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 114
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 151, 0

Conread position: 601-803
Cow position: chr26:33201924-33202124 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 143
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 157, 0

Conread position: 601-820
Cow position: chr26:28251301-28251078 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 168
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 109, 10

Conread position: 601-831
Cow position: chr26:33736409-33736634 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 162
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 55, 16

Conread position: 602-814
Cow position: chr26:35704527-35704318 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 158
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 192, 20

Conread position: 603-815
Cow position: chr26:26537379-26537593 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 158
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 52, 13

Conread position: 603-817
Cow position: chr26:19591625-19591412 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 152
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 154, 19

Conread position: 603-824
Cow position: chr26:16632644-16632412 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 159
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 49, 42

Conread position: 604-820
Cow position: chr26:33253173-33253391 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 149
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 10, 18

Conread position: 605-761
Cow position: chr26:34611038-34611195 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 19, 0

Conread position: 605-815
Cow position: chr26:20291552-20291755 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 160
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 17, 0

Conread position: 605-818
Cow position: chr26:22354556-22354344 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 144
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 46, 152

Conread position: 605-828
Cow position: chr26:8353111-8352881 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 154
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 156, 0

Conread position: 605-828
Cow position: chr26:27491359-27491581 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 165
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 165, 87

Conread position: 607-828
Cow position: chr26:7687106-7687320 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 161
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 16, 0

Conread position: 611-824
Cow position: chr26:8643077-8642869 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 151
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 157, 80

Conread position: 615-820
Cow position: chr26:33112253-33112454 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 27, 98

Conread position: 615-828
Cow position: chr26:32566143-32565936 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 144
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 118, 0

Conread position: 616-789
Cow position: chr26:19636425-19636249 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 65, 0

Conread position: 616-794
Cow position: chr26:12940531-12940359 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 156, 0

Conread position: 616-794
Cow position: chr26:33392525-33392347 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 40, 36

Conread position: 616-795
Cow position: chr26:18740926-18741107 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 127
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 154, 0

Conread position: 616-815
Cow position: chr26:20769982-20769782 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 148
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 156, 0

Conread position: 616-820
Cow position: chr26:6451308-6451107 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 145
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 157, 15

Conread position: 616-820
Cow position: chr26:32834448-32834645 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 140
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 104, 0

Conread position: 616-824
Cow position: chr26:33566913-33567121 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 143
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 97, 72

Conread position: 616-828
Cow position: chr26:12144987-12145199 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 159
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 148, 201

Conread position: 617-820
Cow position: chr26:22152357-22152156 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 139
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 141, 0

Conread position: 618-810
Cow position: chr26:22033608-22033420 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 138
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 143, 23

Conread position: 618-828
Cow position: chr26:17148833-17148624 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 149
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 149, 47

Conread position: 621-771
Cow position: chr26:5666175-5666024 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 109
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 621-815
Cow position: chr26:21636912-21637107 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 148
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 139, 14

Conread position: 622-828
Cow position: chr26:16783952-16783744 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 146
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 6, 186

Conread position: 622-830
Cow position: chr26:8699922-8700129 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 148
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 136, 0

Conread position: 623-828
Cow position: chr26:6514967-6514762 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 146
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 137, 132

Conread position: 623-828
Cow position: chr26:9492046-9491846 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 144, 69

Conread position: 623-828
Cow position: chr26:26888011-26888211 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 162
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 29, 0

Conread position: 624-816
Cow position: chr26:14481431-14481621 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 145
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 119, 0

Conread position: 625-828
Cow position: chr26:32955508-32955712 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 74, 144

Conread position: 626-818
Cow position: chr26:31556811-31557005 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 138
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 134, 0

Conread position: 644-766
Cow position: chr26:1328753-1328875 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 650-824
Cow position: chr26:5246381-5246555 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 122
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 125, 111

Conread position: 652-824
Cow position: chr26:18651541-18651710 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 140
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 62, 40

Conread position: 655-819
Cow position: chr26:23142012-23142178 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 101, 0

Conread position: 656-828
Cow position: chr26:32897778-32897951 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 111, 0

Conread position: 661-824
Cow position: chr26:12893341-12893501 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 117
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 98, 0

Conread position: 661-824
Cow position: chr26:21992188-21992027 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 97, 0

Conread position: 664-828
Cow position: chr26:33096475-33096639 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 121
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 57, 67

Conread position: 693-828
Cow position: chr26:5307197-5307056 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 115
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 71, 0

Conread position: 713-820
Cow position: chr26:8341489-8341381 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 87
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 50, 0

Show alignments to all cow chromosomes.