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Cow genome map

           
Conread name:
           
Ss1.1-Lym2-sn29_A08.f.5
        

               
Conread position:
               
472-824
               

               
Cow position:
               
chr5:58447089-58446736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
46, 24
               

               
Conread position:
               
489-809
               

               
Cow position:
               
chr5:43408097-43408411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
163, 110
               

               
Conread position:
               
491-817
               

               
Cow position:
               
chr5:30233160-30232843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
28, 85
               

               
Conread position:
               
494-823
               

               
Cow position:
               
chr5:54311593-54311269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
499-734
               

               
Cow position:
               
chr5:33256219-33256452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 114
               

               
Conread position:
               
499-820
               

               
Cow position:
               
chr5:991706-991403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
500-814
               

               
Cow position:
               
chr5:63987185-63987508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 193
               

               
Conread position:
               
501-633
               

               
Cow position:
               
chr5:50964643-50964505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
501-679
               

               
Cow position:
               
chr5:34922733-34922911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
163, 17
               

               
Conread position:
               
501-758
               

               
Cow position:
               
chr5:44874453-44874191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
93, 151
               

               
Conread position:
               
501-810
               

               
Cow position:
               
chr5:24136964-24136660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
254, 17
               

               
Conread position:
               
501-824
               

               
Cow position:
               
chr5:35969772-35969474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
11, 79
               

               
Conread position:
               
501-824
               

               
Cow position:
               
chr5:43992584-43992255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
18, 261
               

               
Conread position:
               
501-825
               

               
Cow position:
               
chr5:64591840-64592162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 48
               

               
Conread position:
               
501-828
               

               
Cow position:
               
chr5:46512537-46512834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
501-829
               

               
Cow position:
               
chr5:29912669-29912347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
193, 17
               

               
Conread position:
               
502-795
               

               
Cow position:
               
chr5:31052617-31052347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
503-779
               

               
Cow position:
               
chr5:58555385-58555112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
242, 90
               

               
Conread position:
               
505-722
               

               
Cow position:
               
chr5:38647882-38647674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
505-731
               

               
Cow position:
               
chr5:60595883-60596106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
10, 85
               

               
Conread position:
               
505-794
               

               
Cow position:
               
chr5:4166892-4166607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
56, 72
               

               
Conread position:
               
505-794
               

               
Cow position:
               
chr5:49341805-49342088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
10, 96
               

               
Conread position:
               
505-820
               

               
Cow position:
               
chr5:37646298-37646611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
252, 20
               

               
Conread position:
               
505-828
               

               
Cow position:
               
chr5:5110833-5111146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
109, 16
               

               
Conread position:
               
505-829
               

               
Cow position:
               
chr5:25495125-25495423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
309, 13
               

               
Conread position:
               
506-727
               

               
Cow position:
               
chr5:73536836-73536610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
158, 105
               

               
Conread position:
               
506-764
               

               
Cow position:
               
chr5:24069638-24069382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
88, 124
               

               
Conread position:
               
506-828
               

               
Cow position:
               
chr5:50822028-50821711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
114, 19
               

               
Conread position:
               
507-828
               

               
Cow position:
               
chr5:31640670-31640349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
72, 11
               

               
Conread position:
               
507-828
               

               
Cow position:
               
chr5:55966648-55966950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
513-745
               

               
Cow position:
               
chr5:35647594-35647354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
514-782
               

               
Cow position:
               
chr5:61875772-61875517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
514-824
               

               
Cow position:
               
chr5:54767665-54767976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
57, 221
               

               
Conread position:
               
514-828
               

               
Cow position:
               
chr5:49440634-49440943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
515-674
               

               
Cow position:
               
chr5:29831300-29831461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
517-820
               

               
Cow position:
               
chr5:34301159-34300853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
56, 180
               

               
Conread position:
               
517-824
               

               
Cow position:
               
chr5:23678466-23678769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
244, 94
               

               
Conread position:
               
518-807
               

               
Cow position:
               
chr5:49501604-49501875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
27, 22
               

               
Conread position:
               
518-813
               

               
Cow position:
               
chr5:60598973-60599250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
518-829
               

               
Cow position:
               
chr5:41545653-41545966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
76, 44
               

               
Conread position:
               
518-843
               

               
Cow position:
               
chr5:23168587-23168917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
524-828
               

               
Cow position:
               
chr5:44726103-44726397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
544-824
               

               
Cow position:
               
chr5:13717363-13717634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
563-824
               

               
Cow position:
               
chr5:55956106-55955840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
22, 69
               

               
Conread position:
               
572-795
               

               
Cow position:
               
chr5:61102900-61102676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 150
               

               
Conread position:
               
572-803
               

               
Cow position:
               
chr5:35982552-35982787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
572-814
               

               
Cow position:
               
chr5:34887005-34887257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
42, 62
               

               
Conread position:
               
572-820
               

               
Cow position:
               
chr5:4221155-4220921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
573-795
               

               
Cow position:
               
chr5:33538060-33537830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
32, 7
               

               
Conread position:
               
578-819
               

               
Cow position:
               
chr5:7044525-7044769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
45, 8
               

               
Conread position:
               
579-820
               

               
Cow position:
               
chr5:54060453-54060214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
184, 124
               

               
Conread position:
               
579-824
               

               
Cow position:
               
chr5:37893509-37893266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
178, 47
               

               
Conread position:
               
582-794
               

               
Cow position:
               
chr5:22667244-22667040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
184, 39
               

               
Conread position:
               
586-825
               

               
Cow position:
               
chr5:50533218-50533455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
70, 66
               

               
Conread position:
               
588-787
               

               
Cow position:
               
chr5:27306474-27306274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
20, 142
               

               
Conread position:
               
588-795
               

               
Cow position:
               
chr5:20288094-20288302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
589-744
               

               
Cow position:
               
chr5:46704133-46704287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
591-828
               

               
Cow position:
               
chr5:7755407-7755633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
591-828
               

               
Cow position:
               
chr5:56877645-56877416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
65, 31
               

               
Conread position:
               
592-762
               

               
Cow position:
               
chr5:50824757-50824586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
592-823
               

               
Cow position:
               
chr5:73418127-73418349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
592-828
               

               
Cow position:
               
chr5:19524062-19523829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
44, 24
               

               
Conread position:
               
592-841
               

               
Cow position:
               
chr5:52165015-52165263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
239, 63
               

               
Conread position:
               
593-828
               

               
Cow position:
               
chr5:35826764-35826532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
179, 38
               

               
Conread position:
               
594-824
               

               
Cow position:
               
chr5:50575943-50575718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
594-829
               

               
Cow position:
               
chr5:14314690-14314453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
163, 0
               

               
Conread position:
               
595-789
               

               
Cow position:
               
chr5:22795375-22795181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
157, 96
               

               
Conread position:
               
595-824
               

               
Cow position:
               
chr5:29828203-29827982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
123, 21
               

               
Conread position:
               
595-835
               

               
Cow position:
               
chr5:30628996-30629237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
84, 49
               

               
Conread position:
               
596-792
               

               
Cow position:
               
chr5:26548979-26549177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
596-814
               

               
Cow position:
               
chr5:45397731-45397515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
21, 77
               

               
Conread position:
               
596-823
               

               
Cow position:
               
chr5:41165246-41165020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
171, 26
               

               
Conread position:
               
596-824
               

               
Cow position:
               
chr5:35208419-35208196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
204, 26
               

               
Conread position:
               
596-825
               

               
Cow position:
               
chr5:30276850-30276629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
43, 35
               

               
Conread position:
               
596-829
               

               
Cow position:
               
chr5:62378938-62378719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
596-836
               

               
Cow position:
               
chr5:60183964-60183721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
114, 25
               

               
Conread position:
               
597-824
               

               
Cow position:
               
chr5:67212517-67212289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
170, 28
               

               
Conread position:
               
598-782
               

               
Cow position:
               
chr5:57230181-57230365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
167, 23
               

               
Conread position:
               
598-814
               

               
Cow position:
               
chr5:61726119-61725911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
598-815
               

               
Cow position:
               
chr5:56524330-56524111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
69, 18
               

               
Conread position:
               
598-828
               

               
Cow position:
               
chr5:44446707-44446939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
599-745
               

               
Cow position:
               
chr5:38169050-38168905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
50, 18
               

               
Conread position:
               
599-795
               

               
Cow position:
               
chr5:17602048-17602239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
161, 107
               

               
Conread position:
               
599-799
               

               
Cow position:
               
chr5:66531072-66530875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
168, 25
               

               
Conread position:
               
599-800
               

               
Cow position:
               
chr5:69099876-69099675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
164, 24
               

               
Conread position:
               
599-814
               

               
Cow position:
               
chr5:40242199-40241985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
162, 22
               

               
Conread position:
               
599-815
               

               
Cow position:
               
chr5:12673323-12673526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
599-820
               

               
Cow position:
               
chr5:47601967-47601756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
599-820
               

               
Cow position:
               
chr5:59626815-59627037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 45
               

               
Conread position:
               
599-827
               

               
Cow position:
               
chr5:57074175-57074403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 18
               

               
Conread position:
               
599-828
               

               
Cow position:
               
chr5:21617612-21617386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 18
               

               
Conread position:
               
599-828
               

               
Cow position:
               
chr5:21829024-21828795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
165, 69
               

               
Conread position:
               
599-828
               

               
Cow position:
               
chr5:45845533-45845763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
57, 23
               

               
Conread position:
               
599-828
               

               
Cow position:
               
chr5:56071015-56070785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 24
               

               
Conread position:
               
599-828
               

               
Cow position:
               
chr5:65941096-65941321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
164, 15
               

               
Conread position:
               
599-829
               

               
Cow position:
               
chr5:30253898-30253669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
157, 0
               

               
Conread position:
               
599-831
               

               
Cow position:
               
chr5:50600203-50599982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
81, 17
               

               
Conread position:
               
600-815
               

               
Cow position:
               
chr5:66366669-66366449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
41, 11
               

               
Conread position:
               
600-826
               

               
Cow position:
               
chr5:9893968-9894198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
170, 21
               

               
Conread position:
               
600-827
               

               
Cow position:
               
chr5:68719024-68718799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
25, 90
               

               
Conread position:
               
600-828
               

               
Cow position:
               
chr5:17767996-17768215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
42, 17
               

               
Conread position:
               
601-743
               

               
Cow position:
               
chr5:2240836-2240976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
601-766
               

               
Cow position:
               
chr5:9233835-9234000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
39, 15
               

               
Conread position:
               
601-767
               

               
Cow position:
               
chr5:39035935-39035769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
10, 45
               

               
Conread position:
               
601-794
               

               
Cow position:
               
chr5:69337975-69337786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
40, 45
               

               
Conread position:
               
601-824
               

               
Cow position:
               
chr5:47323615-47323398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
601-827
               

               
Cow position:
               
chr5:35685090-35684864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
161, 90
               

               
Conread position:
               
601-828
               

               
Cow position:
               
chr5:56028388-56028598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
601-829
               

               
Cow position:
               
chr5:32338813-32339036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
106, 15
               

               
Conread position:
               
601-831
               

               
Cow position:
               
chr5:17554878-17555106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
99, 48
               

               
Conread position:
               
601-831
               

               
Cow position:
               
chr5:66257791-66257564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
601-840
               

               
Cow position:
               
chr5:4280601-4280365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
118, 21
               

               
Conread position:
               
601-841
               

               
Cow position:
               
chr5:16206000-16206240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
78, 112
               

               
Conread position:
               
602-790
               

               
Cow position:
               
chr5:66466468-66466285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
603-810
               

               
Cow position:
               
chr5:12434694-12434480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
161, 23
               

               
Conread position:
               
603-821
               

               
Cow position:
               
chr5:45419984-45420198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
603-825
               

               
Cow position:
               
chr5:65753014-65752789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
603-825
               

               
Cow position:
               
chr5:66551741-66551967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
11, 21
               

               
Conread position:
               
603-828
               

               
Cow position:
               
chr5:69461486-69461263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
81, 19
               

               
Conread position:
               
604-770
               

               
Cow position:
               
chr5:17105000-17104839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
604-828
               

               
Cow position:
               
chr5:74643528-74643742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
605-730
               

               
Cow position:
               
chr5:34288103-34288224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
605-768
               

               
Cow position:
               
chr5:60523884-60523721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
12, 87
               

               
Conread position:
               
605-772
               

               
Cow position:
               
chr5:60668857-60668684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
107, 52
               

               
Conread position:
               
605-801
               

               
Cow position:
               
chr5:72006340-72006537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
157, 12
               

               
Conread position:
               
605-813
               

               
Cow position:
               
chr5:56338870-56339074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
605-820
               

               
Cow position:
               
chr5:16893621-16893836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
149, 26
               

               
Conread position:
               
605-820
               

               
Cow position:
               
chr5:42050704-42050488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
23, 130
               

               
Conread position:
               
605-820
               

               
Cow position:
               
chr5:55019442-55019232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
605-821
               

               
Cow position:
               
chr5:17086871-17087086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
156, 6
               

               
Conread position:
               
605-823
               

               
Cow position:
               
chr5:40109643-40109425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
160, 79
               

               
Conread position:
               
605-824
               

               
Cow position:
               
chr5:45574769-45574548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
115, 11
               

               
Conread position:
               
605-825
               

               
Cow position:
               
chr5:43929585-43929805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
160, 111
               

               
Conread position:
               
605-825
               

               
Cow position:
               
chr5:60016317-60016099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
9, 88
               

               
Conread position:
               
605-827
               

               
Cow position:
               
chr5:25230868-25231078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
147, 44
               

               
Conread position:
               
605-828
               

               
Cow position:
               
chr5:26467779-26467552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
605-828
               

               
Cow position:
               
chr5:57575922-57575698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
106, 26
               

               
Conread position:
               
605-828
               

               
Cow position:
               
chr5:66339224-66339008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
60, 12
               

               
Conread position:
               
605-829
               

               
Cow position:
               
chr5:54375353-54375579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
92, 17
               

               
Conread position:
               
605-843
               

               
Cow position:
               
chr5:44028154-44028393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
21, 89
               

               
Conread position:
               
606-803
               

               
Cow position:
               
chr5:57101635-57101828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
55, 11
               

               
Conread position:
               
607-825
               

               
Cow position:
               
chr5:65967584-65967796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
158, 15
               

               
Conread position:
               
609-828
               

               
Cow position:
               
chr5:24996076-24996294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
165, 70
               

               
Conread position:
               
612-768
               

               
Cow position:
               
chr5:74974187-74974341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
612-820
               

               
Cow position:
               
chr5:58793461-58793672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
25, 143
               

               
Conread position:
               
612-828
               

               
Cow position:
               
chr5:43403049-43402829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
23, 27
               

               
Conread position:
               
616-767
               

               
Cow position:
               
chr5:34914913-34915064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
616-790
               

               
Cow position:
               
chr5:57686597-57686774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
616-828
               

               
Cow position:
               
chr5:7698140-7697934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
616-828
               

               
Cow position:
               
chr5:38833261-38833052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
136, 96
               

               
Conread position:
               
616-829
               

               
Cow position:
               
chr5:11229533-11229741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
46, 90
               

               
Conread position:
               
616-829
               

               
Cow position:
               
chr5:22242625-22242846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
62, 79
               

               
Conread position:
               
616-829
               

               
Cow position:
               
chr5:28302603-28302819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
100, 182
               

               
Conread position:
               
617-794
               

               
Cow position:
               
chr5:15364021-15363843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
617-802
               

               
Cow position:
               
chr5:56517243-56517057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
98, 76
               

               
Conread position:
               
617-820
               

               
Cow position:
               
chr5:74016079-74015877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
33, 26
               

               
Conread position:
               
617-828
               

               
Cow position:
               
chr5:14629666-14629884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
617-828
               

               
Cow position:
               
chr5:36038862-36039075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
59, 84
               

               
Conread position:
               
617-828
               

               
Cow position:
               
chr5:56014870-56014663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
149, 187
               

               
Conread position:
               
617-829
               

               
Cow position:
               
chr5:72895825-72895615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
180, 0
               

               
Conread position:
               
618-764
               

               
Cow position:
               
chr5:69383392-69383247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
618-794
               

               
Cow position:
               
chr5:74580928-74580752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
6, 126
               

               
Conread position:
               
618-803
               

               
Cow position:
               
chr5:20422055-20422234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
32, 25
               

               
Conread position:
               
618-806
               

               
Cow position:
               
chr5:67118559-67118369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
618-828
               

               
Cow position:
               
chr5:6045434-6045220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
618-828
               

               
Cow position:
               
chr5:62172549-62172345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
618-828
               

               
Cow position:
               
chr5:63234691-63234897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
158, 92
               

               
Conread position:
               
618-829
               

               
Cow position:
               
chr5:70951751-70951948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
620-819
               

               
Cow position:
               
chr5:26150286-26150483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
622-758
               

               
Cow position:
               
chr5:21223457-21223322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
40, 35
               

               
Conread position:
               
622-779
               

               
Cow position:
               
chr5:45186986-45187142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
133, 30
               

               
Conread position:
               
622-820
               

               
Cow position:
               
chr5:1461223-1461024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
144, 130
               

               
Conread position:
               
622-820
               

               
Cow position:
               
chr5:15721940-15722129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
622-825
               

               
Cow position:
               
chr5:29903389-29903586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
622-825
               

               
Cow position:
               
chr5:30303025-30302825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
143, 70
               

               
Conread position:
               
622-827
               

               
Cow position:
               
chr5:45804194-45803989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
12, 34
               

               
Conread position:
               
622-828
               

               
Cow position:
               
chr5:6286299-6286495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
622-831
               

               
Cow position:
               
chr5:63992038-63992243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
207, 181
               

               
Conread position:
               
622-835
               

               
Cow position:
               
chr5:46509730-46509945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
6, 160
               

               
Conread position:
               
623-820
               

               
Cow position:
               
chr5:35976643-35976458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
623-820
               

               
Cow position:
               
chr5:72951977-72951778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
623-824
               

               
Cow position:
               
chr5:30949782-30949983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
144, 174
               

               
Conread position:
               
623-828
               

               
Cow position:
               
chr5:20783755-20783553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
60, 94
               

               
Conread position:
               
623-828
               

               
Cow position:
               
chr5:53835849-53835642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
120, 52
               

               
Conread position:
               
623-828
               

               
Cow position:
               
chr5:64026886-64027079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
623-828
               

               
Cow position:
               
chr5:64175993-64176188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
624-828
               

               
Cow position:
               
chr5:15426670-15426458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
138, 103
               

               
Conread position:
               
625-821
               

               
Cow position:
               
chr5:62142807-62142606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
625-825
               

               
Cow position:
               
chr5:8820882-8821081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
145, 74
               

               
Conread position:
               
626-828
               

               
Cow position:
               
chr5:57934978-57935180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
626-829
               

               
Cow position:
               
chr5:15598108-15598305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
135, 40
               

               
Conread position:
               
627-829
               

               
Cow position:
               
chr5:64139689-64139494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
631-750
               

               
Cow position:
               
chr5:12169644-12169762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
631-828
               

               
Cow position:
               
chr5:48009734-48009920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
161, 96
               

               
Conread position:
               
633-843
               

               
Cow position:
               
chr5:49474422-49474637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
637-790
               

               
Cow position:
               
chr5:20407559-20407713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
652-790
               

               
Cow position:
               
chr5:51065633-51065498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
657-824
               

               
Cow position:
               
chr5:32696724-32696888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
660-828
               

               
Cow position:
               
chr5:63865891-63865724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
103, 31
               

               
Conread position:
               
660-829
               

               
Cow position:
               
chr5:64321850-64321680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
137, 98
               

               
Conread position:
               
661-824
               

               
Cow position:
               
chr5:24349202-24349041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
664-803
               

               
Cow position:
               
chr5:63192649-63192788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
100, 28
               

               
Conread position:
               
671-828
               

               
Cow position:
               
chr5:31144702-31144859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
93, 124
               

               
Conread position:
               
673-828
               

               
Cow position:
               
chr5:34638967-34638813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
678-813
               

               
Cow position:
               
chr5:50799612-50799478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
85, 61
               

               
Conread position:
               
681-817
               

               
Cow position:
               
chr5:45472357-45472220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
713-820
               

               
Cow position:
               
chr5:60126416-60126308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
713-829
               

               
Cow position:
               
chr5:3549738-3549858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
50, 105
               
Show alignments to all cow chromosomes.