Cow genome map
| Conread name: | Ss1.1-Lym2-sn29_A08.f.5 |
| Conread position: | 467-824 |
| Cow position: | chr9:7362788-7363144 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 13, 155 |
| Conread position: | 480-829 |
| Cow position: | chr9:46317007-46316659 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 43 |
| Conread position: | 496-831 |
| Cow position: | chr9:9461848-9461527 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 226 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 16, 47 |
| Conread position: | 499-828 |
| Cow position: | chr9:4268180-4267858 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 500-751 |
| Cow position: | chr9:59699729-59699497 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 12, 40 |
| Conread position: | 501-651 |
| Cow position: | chr9:42986487-42986334 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 110, 17 |
| Conread position: | 501-703 |
| Cow position: | chr9:34264909-34265097 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 501-708 |
| Cow position: | chr9:1323858-1323652 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 11, 128 |
| Conread position: | 501-760 |
| Cow position: | chr9:5104585-5104344 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 501-807 |
| Cow position: | chr9:19067594-19067889 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 71 |
| Conread position: | 501-825 |
| Cow position: | chr9:3782166-3782482 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 70, 17 |
| Conread position: | 501-828 |
| Cow position: | chr9:10118843-10118539 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 14, 99 |
| Conread position: | 502-829 |
| Cow position: | chr9:1937928-1938258 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 10, 72 |
| Conread position: | 505-824 |
| Cow position: | chr9:33597803-33598102 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 505-825 |
| Cow position: | chr9:9654499-9654189 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 268, 13 |
| Conread position: | 505-825 |
| Cow position: | chr9:29824846-29825159 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 242, 17 |
| Conread position: | 505-828 |
| Cow position: | chr9:39681130-39681465 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 68, 159 |
| Conread position: | 506-721 |
| Cow position: | chr9:34811285-34811496 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 506-749 |
| Cow position: | chr9:55354424-55354659 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 506-824 |
| Cow position: | chr9:44467540-44467231 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 67, 229 |
| Conread position: | 506-828 |
| Cow position: | chr9:5763828-5763508 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 108, 31 |
| Conread position: | 513-820 |
| Cow position: | chr9:52513629-52513335 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 241, 80 |
| Conread position: | 514-815 |
| Cow position: | chr9:18342552-18342843 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 514-820 |
| Cow position: | chr9:44832237-44831937 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 88, 12 |
| Conread position: | 514-824 |
| Cow position: | chr9:55084496-55084176 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 95, 168 |
| Conread position: | 514-825 |
| Cow position: | chr9:7634060-7634396 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 58, 28 |
| Conread position: | 514-828 |
| Cow position: | chr9:8562641-8562963 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 239, 101 |
| Conread position: | 515-744 |
| Cow position: | chr9:6293395-6293638 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 515-829 |
| Cow position: | chr9:52840063-52839760 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 80, 29 |
| Conread position: | 517-691 |
| Cow position: | chr9:36826728-36826895 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 517-828 |
| Cow position: | chr9:9753561-9753268 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 204 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 520-825 |
| Cow position: | chr9:56772905-56773202 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 224 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 190, 47 |
| Conread position: | 520-829 |
| Cow position: | chr9:62668060-62668376 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 51, 132 |
| Conread position: | 544-814 |
| Cow position: | chr9:26310351-26310620 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 52, 68 |
| Conread position: | 544-824 |
| Cow position: | chr9:1520896-1520616 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 146, 91 |
| Conread position: | 568-821 |
| Cow position: | chr9:38645477-38645224 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 201, 108 |
| Conread position: | 572-767 |
| Cow position: | chr9:9502960-9503149 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 579-811 |
| Cow position: | chr9:32982193-32981963 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 137, 32 |
| Conread position: | 579-824 |
| Cow position: | chr9:17411313-17411070 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 580-829 |
| Cow position: | chr9:17872230-17871980 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 177, 5 |
| Conread position: | 583-794 |
| Cow position: | chr9:53751078-53750863 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 72, 28 |
| Conread position: | 585-828 |
| Cow position: | chr9:767262-767027 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 130, 30 |
| Conread position: | 586-824 |
| Cow position: | chr9:5456290-5456056 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 50, 60 |
| Conread position: | 591-794 |
| Cow position: | chr9:44770301-44770106 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 166, 20 |
| Conread position: | 591-825 |
| Cow position: | chr9:23388781-23388555 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 172, 32 |
| Conread position: | 591-829 |
| Cow position: | chr9:52267863-52267630 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 71, 35 |
| Conread position: | 593-802 |
| Cow position: | chr9:29195133-29194923 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 30, 40 |
| Conread position: | 593-823 |
| Cow position: | chr9:5263391-5263622 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 31, 74 |
| Conread position: | 593-843 |
| Cow position: | chr9:18380757-18381005 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 99 |
| Conread position: | 595-820 |
| Cow position: | chr9:13169766-13169544 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 595-824 |
| Cow position: | chr9:50081144-50080925 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 595-825 |
| Cow position: | chr9:13205673-13205445 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 5, 82 |
| Conread position: | 595-828 |
| Cow position: | chr9:36491005-36490766 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 76, 22 |
| Conread position: | 596-795 |
| Cow position: | chr9:8629020-8628823 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 163, 15 |
| Conread position: | 596-804 |
| Cow position: | chr9:9459881-9460077 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 93, 20 |
| Conread position: | 596-820 |
| Cow position: | chr9:3186021-3186245 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 596-824 |
| Cow position: | chr9:55795654-55795882 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 169, 76 |
| Conread position: | 596-828 |
| Cow position: | chr9:19555271-19555499 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 23, 15 |
| Conread position: | 596-828 |
| Cow position: | chr9:20847833-20848057 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 171, 19 |
| Conread position: | 596-828 |
| Cow position: | chr9:38792915-38793139 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 68, 26 |
| Conread position: | 596-829 |
| Cow position: | chr9:53762591-53762824 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 114, 26 |
| Conread position: | 597-815 |
| Cow position: | chr9:62357634-62357416 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 17, 97 |
| Conread position: | 599-770 |
| Cow position: | chr9:57131395-57131565 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 599-794 |
| Cow position: | chr9:37199028-37199215 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 599-795 |
| Cow position: | chr9:17840780-17840582 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 158 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 599-819 |
| Cow position: | chr9:52578642-52578419 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 20, 54 |
| Conread position: | 599-820 |
| Cow position: | chr9:34286697-34286920 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 599-820 |
| Cow position: | chr9:51620342-51620555 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 25, 94 |
| Conread position: | 599-824 |
| Cow position: | chr9:9406153-9405929 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 159, 33 |
| Conread position: | 599-825 |
| Cow position: | chr9:6189465-6189249 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 599-828 |
| Cow position: | chr9:4341259-4341044 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 178 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 599-828 |
| Cow position: | chr9:17741042-17740822 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 599-828 |
| Cow position: | chr9:24887104-24887325 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 157, 0 |
| Conread position: | 599-828 |
| Cow position: | chr9:41728159-41728383 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 178 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 167, 22 |
| Conread position: | 599-828 |
| Cow position: | chr9:43757440-43757663 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 98, 17 |
| Conread position: | 599-831 |
| Cow position: | chr9:26345063-26344839 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 601-820 |
| Cow position: | chr9:55256650-55256433 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 150, 16 |
| Conread position: | 601-820 |
| Cow position: | chr9:58132050-58131846 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 601-824 |
| Cow position: | chr9:32670047-32669826 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 40, 45 |
| Conread position: | 601-824 |
| Cow position: | chr9:42446082-42445858 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 156, 20 |
| Conread position: | 601-825 |
| Cow position: | chr9:9596051-9595832 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 99, 20 |
| Conread position: | 601-829 |
| Cow position: | chr9:12910501-12910275 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 602-819 |
| Cow position: | chr9:54493038-54493254 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 159, 20 |
| Conread position: | 602-820 |
| Cow position: | chr9:22443723-22443510 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 602-829 |
| Cow position: | chr9:56453239-56453455 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 22, 37 |
| Conread position: | 603-820 |
| Cow position: | chr9:31079177-31078965 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 603-824 |
| Cow position: | chr9:28726830-28726599 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 603-824 |
| Cow position: | chr9:50139189-50139406 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 118, 13 |
| Conread position: | 603-828 |
| Cow position: | chr9:21460249-21460027 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 162, 88 |
| Conread position: | 603-828 |
| Cow position: | chr9:27279211-27279434 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 159, 0 |
| Conread position: | 603-828 |
| Cow position: | chr9:34958153-34957929 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 158, 8 |
| Conread position: | 603-829 |
| Cow position: | chr9:3738322-3738095 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 162, 178 |
| Conread position: | 603-843 |
| Cow position: | chr9:57897206-57896977 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 225, 19 |
| Conread position: | 604-815 |
| Cow position: | chr9:39011564-39011358 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 153, 22 |
| Conread position: | 605-789 |
| Cow position: | chr9:9686508-9686327 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 605-814 |
| Cow position: | chr9:54528418-54528623 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 605-817 |
| Cow position: | chr9:9403274-9403061 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 71, 16 |
| Conread position: | 605-820 |
| Cow position: | chr9:29006464-29006680 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 150, 33 |
| Conread position: | 605-820 |
| Cow position: | chr9:45141694-45141484 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 605-823 |
| Cow position: | chr9:33584779-33584562 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 170 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 160, 12 |
| Conread position: | 605-824 |
| Cow position: | chr9:5500758-5500979 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 81, 12 |
| Conread position: | 605-824 |
| Cow position: | chr9:21888074-21888288 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 605-828 |
| Cow position: | chr9:33119984-33119760 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 605-828 |
| Cow position: | chr9:34375020-34374810 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 605-828 |
| Cow position: | chr9:49293237-49293020 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 605-828 |
| Cow position: | chr9:64091585-64091810 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 152, 34 |
| Conread position: | 605-829 |
| Cow position: | chr9:26279265-26279045 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 109, 99 |
| Conread position: | 605-843 |
| Cow position: | chr9:8534792-8534549 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 40, 205 |
| Conread position: | 606-820 |
| Cow position: | chr9:9551996-9552210 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 155, 22 |
| Conread position: | 606-825 |
| Cow position: | chr9:28747612-28747400 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 606-825 |
| Cow position: | chr9:44921499-44921268 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 615-783 |
| Cow position: | chr9:63361805-63361635 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 616-782 |
| Cow position: | chr9:41785127-41785291 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 616-789 |
| Cow position: | chr9:54615385-54615214 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 154, 71 |
| Conread position: | 616-820 |
| Cow position: | chr9:48627943-48628146 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 144, 155 |
| Conread position: | 616-820 |
| Cow position: | chr9:59013424-59013216 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 145, 80 |
| Conread position: | 616-824 |
| Cow position: | chr9:6952016-6952228 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 92, 81 |
| Conread position: | 616-824 |
| Cow position: | chr9:51720982-51720781 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 616-828 |
| Cow position: | chr9:61302915-61303129 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 616-829 |
| Cow position: | chr9:5219257-5219042 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 616-829 |
| Cow position: | chr9:30123844-30124047 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 150, 76 |
| Conread position: | 616-831 |
| Cow position: | chr9:7952816-7953028 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 616-831 |
| Cow position: | chr9:43870890-43871107 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 616-840 |
| Cow position: | chr9:19902997-19903216 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 617-812 |
| Cow position: | chr9:28754735-28754929 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 140, 15 |
| Conread position: | 617-814 |
| Cow position: | chr9:55321553-55321753 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 617-824 |
| Cow position: | chr9:17310645-17310441 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 158, 27 |
| Conread position: | 617-825 |
| Cow position: | chr9:60395132-60394928 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 617-828 |
| Cow position: | chr9:6596314-6596109 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 617-831 |
| Cow position: | chr9:6192543-6192333 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 71, 14 |
| Conread position: | 618-766 |
| Cow position: | chr9:39758435-39758583 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 621-823 |
| Cow position: | chr9:8636587-8636790 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 178, 0 |
| Conread position: | 621-828 |
| Cow position: | chr9:1867371-1867575 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 621-828 |
| Cow position: | chr9:11299760-11299565 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 621-828 |
| Cow position: | chr9:58670663-58670857 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 142, 23 |
| Conread position: | 621-828 |
| Cow position: | chr9:60027117-60027327 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 95, 99 |
| Conread position: | 622-811 |
| Cow position: | chr9:45285614-45285418 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 157 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 622-814 |
| Cow position: | chr9:20090967-20091159 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 95, 138 |
| Conread position: | 622-828 |
| Cow position: | chr9:5509644-5509847 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 24 |
| Conread position: | 623-757 |
| Cow position: | chr9:6685821-6685955 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 623-814 |
| Cow position: | chr9:25556894-25557083 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 142, 175 |
| Conread position: | 623-818 |
| Cow position: | chr9:3378676-3378868 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 623-824 |
| Cow position: | chr9:20416584-20416389 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 625-816 |
| Cow position: | chr9:23956056-23955870 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 625-820 |
| Cow position: | chr9:11168654-11168847 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 625-828 |
| Cow position: | chr9:50607021-50606823 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 626-824 |
| Cow position: | chr9:19493541-19493341 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 631-819 |
| Cow position: | chr9:21080493-21080679 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 638-824 |
| Cow position: | chr9:5227235-5227049 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 125, 75 |
| Conread position: | 643-828 |
| Cow position: | chr9:1756203-1756019 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 649-824 |
| Cow position: | chr9:21030256-21030430 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 649-825 |
| Cow position: | chr9:43875771-43875591 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 650-824 |
| Cow position: | chr9:40005423-40005597 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 110, 106 |
| Conread position: | 651-824 |
| Cow position: | chr9:35904796-35904624 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 5, 105 |
| Conread position: | 651-828 |
| Cow position: | chr9:23431198-23431020 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 5, 50 |
| Conread position: | 655-827 |
| Cow position: | chr9:11969140-11969312 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 77, 87 |
| Conread position: | 657-820 |
| Cow position: | chr9:17799581-17799747 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 657-827 |
| Cow position: | chr9:27029749-27029578 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 109, 100 |
| Conread position: | 664-835 |
| Cow position: | chr9:15805960-15805792 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 101, 93 |
| Conread position: | 671-820 |
| Cow position: | chr9:5441959-5442109 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 672-828 |
| Cow position: | chr9:36827106-36827256 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 680-828 |
| Cow position: | chr9:22360989-22361141 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 87, 78 |
| Conread position: | 714-831 |
| Cow position: | chr9:42509129-42509243 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 49, 0 |
Show alignments to all cow chromosomes.