Cow genome map

Conread name: Ss1.1-Lym2-sn56_D12.f1.5

Conread position: 5-143
Cow position: chr15:241132-240991 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 5-148
Cow position: chr15:41583195-41583055 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 16, 40

Conread position: 5-149
Cow position: chr15:4485428-4485284 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 82, 15

Conread position: 5-149
Cow position: chr15:15041150-15041291 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 9, 13

Conread position: 5-151
Cow position: chr15:21388880-21389027 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 16, 39

Conread position: 5-151
Cow position: chr15:44437019-44436872 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 16, 40

Conread position: 5-152
Cow position: chr15:16640069-16639923 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 110
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 9, 134

Conread position: 5-157
Cow position: chr15:1329814-1329967 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 122
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 9, 0

Conread position: 5-157
Cow position: chr15:7430266-7430112 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 112
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 5-157
Cow position: chr15:16667214-16667363 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 112
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 9, 118

Conread position: 5-157
Cow position: chr15:19403263-19403116 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 83, 12

Conread position: 5-157
Cow position: chr15:22168343-22168193 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 16, 38

Conread position: 5-157
Cow position: chr15:31857877-31857724 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 120
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 16, 0

Conread position: 5-157
Cow position: chr15:36773409-36773564 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 5-157
Cow position: chr15:38883441-38883287 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 16, 0

Conread position: 5-157
Cow position: chr15:40009365-40009515 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 16, 33

Conread position: 5-157
Cow position: chr15:44051212-44051363 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 18, 135

Conread position: 5-157
Cow position: chr15:47990477-47990630 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 16, 67

Conread position: 5-157
Cow position: chr15:50322880-50322731 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 17, 50

Conread position: 5-158
Cow position: chr15:25584804-25584954 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 16, 102

Conread position: 5-158
Cow position: chr15:26896426-26896574 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 16, 110

Conread position: 5-158
Cow position: chr15:36422942-36422792 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 16, 90

Conread position: 5-158
Cow position: chr15:52611598-52611444 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 112
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 5-159
Cow position: chr15:3699997-3700152 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 16, 0

Conread position: 5-159
Cow position: chr15:5420597-5420747 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 17, 74

Conread position: 5-159
Cow position: chr15:11658280-11658435 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 129
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 16, 0

Conread position: 5-159
Cow position: chr15:12304926-12304775 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 122
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 18, 50

Conread position: 5-159
Cow position: chr15:13515657-13515502 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 128
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 9, 0

Conread position: 5-159
Cow position: chr15:14871031-14870877 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 124
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 9, 117

Conread position: 5-159
Cow position: chr15:25208480-25208629 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 122
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 16, 110

Conread position: 5-159
Cow position: chr15:30047254-30047409 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 124
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 9, 0

Conread position: 5-159
Cow position: chr15:34104551-34104404 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 16, 50

Conread position: 5-159
Cow position: chr15:42788865-42789014 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 16, 60

Conread position: 5-162
Cow position: chr15:51831308-51831467 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 115
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 5-185
Cow position: chr15:9871125-9871305 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 16, 157

Conread position: 6-164
Cow position: chr15:45132-45288 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 15, 52

Conread position: 7-158
Cow position: chr15:38103607-38103757 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 122
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 7, 11

Conread position: 7-159
Cow position: chr15:25907196-25907051 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 14, 84

Conread position: 8-121
Cow position: chr15:30316307-30316422 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 7, 0

Conread position: 8-147
Cow position: chr15:47843825-47843962 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 13, 107

Conread position: 8-155
Cow position: chr15:8027688-8027539 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 6, 0

Conread position: 8-157
Cow position: chr15:1804046-1804200 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 13, 0

Conread position: 8-157
Cow position: chr15:21523072-21522922 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 13, 17

Conread position: 8-157
Cow position: chr15:30001972-30001820 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 111
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 8-157
Cow position: chr15:40957861-40957714 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 13, 25

Conread position: 8-157
Cow position: chr15:43827490-43827638 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 13, 0

Conread position: 8-158
Cow position: chr15:24305196-24305345 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 13, 82

Conread position: 8-159
Cow position: chr15:4093642-4093799 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 8-159
Cow position: chr15:6586431-6586582 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 119
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 13, 137

Conread position: 8-159
Cow position: chr15:10456728-10456879 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 9, 19

Conread position: 8-159
Cow position: chr15:20390996-20391141 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 121
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 13, 52

Conread position: 8-159
Cow position: chr15:24044816-24044963 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 122
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 13, 33

Conread position: 8-159
Cow position: chr15:43913802-43913957 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 8-161
Cow position: chr15:38806213-38806372 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 13, 0

Conread position: 8-162
Cow position: chr15:15881217-15881059 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 13, 0

Conread position: 8-162
Cow position: chr15:19733647-19733492 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 113
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 8, 0

Conread position: 9-157
Cow position: chr15:36259321-36259467 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 120
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 25, 41

Conread position: 9-159
Cow position: chr15:20082041-20081896 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 119
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 13, 124

Conread position: 9-159
Cow position: chr15:32979753-32979906 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 112
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 10-157
Cow position: chr15:608430-608280 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 11, 0

Conread position: 10-157
Cow position: chr15:11646210-11646352 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 109
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 6, 0

Conread position: 10-162
Cow position: chr15:33303615-33303459 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 15-157
Cow position: chr15:41225287-41225425 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 106
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 104, 0

Conread position: 20-146
Cow position: chr15:18720583-18720456 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 98
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 68, 0

Conread position: 20-153
Cow position: chr15:40999796-40999929 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 20-154
Cow position: chr15:33306377-33306248 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 108
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 20, 0

Conread position: 20-155
Cow position: chr15:22871879-22871743 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 101
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 67, 0

Conread position: 20-157
Cow position: chr15:1083103-1083240 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 20-157
Cow position: chr15:1128266-1128130 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 83, 0

Conread position: 20-157
Cow position: chr15:20352102-20351966 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 78, 0

Conread position: 20-157
Cow position: chr15:44641167-44641032 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 66, 26

Conread position: 20-158
Cow position: chr15:6530574-6530713 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 116
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 49, 85

Conread position: 20-158
Cow position: chr15:23332612-23332741 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 20-159
Cow position: chr15:5715821-5715682 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 93, 15

Conread position: 20-159
Cow position: chr15:14505698-14505560 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 123, 0

Conread position: 20-159
Cow position: chr15:16307685-16307547 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 118
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 124, 0

Conread position: 20-159
Cow position: chr15:21832155-21832294 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 69, 37

Conread position: 20-159
Cow position: chr15:23486902-23487034 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 112
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 14, 0

Conread position: 20-159
Cow position: chr15:23703042-23702908 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 112
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 44, 0

Conread position: 20-159
Cow position: chr15:24128299-24128165 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 33, 97

Conread position: 20-159
Cow position: chr15:38877034-38877168 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 116
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 77, 0

Conread position: 20-159
Cow position: chr15:50302452-50302317 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 18, 0

Conread position: 20-159
Cow position: chr15:51822417-51822275 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 106
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 67, 0

Conread position: 21-126
Cow position: chr15:24822107-24822212 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 95
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 21-156
Cow position: chr15:26919006-26919139 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 68, 0

Conread position: 21-156
Cow position: chr15:39599708-39599578 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 109
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 34, 0

Conread position: 21-159
Cow position: chr15:21908205-21908069 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 25, 0

Conread position: 21-159
Cow position: chr15:22532509-22532371 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 120
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 23-151
Cow position: chr15:11995756-11995885 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 64, 0

Conread position: 23-152
Cow position: chr15:16112671-16112540 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 100
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 69, 0

Conread position: 24-159
Cow position: chr15:41125302-41125437 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 26-157
Cow position: chr15:47279873-47280005 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 100
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 66, 0

Conread position: 29-157
Cow position: chr15:16823201-16823073 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 98
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 29-157
Cow position: chr15:23275798-23275673 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 75, 0

Conread position: 29-158
Cow position: chr15:7456962-7456832 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 5, 0

Conread position: 32-159
Cow position: chr15:36888084-36887961 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 90, 0

Conread position: 33-157
Cow position: chr15:10336015-10335892 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 26, 0

Conread position: 33-159
Cow position: chr15:17763165-17763040 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 120, 10

Conread position: 33-173
Cow position: chr15:26158357-26158495 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 117, 0

Conread position: 38-154
Cow position: chr15:39598497-39598381 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 98
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 38-159
Cow position: chr15:11011350-11011471 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 44-159
Cow position: chr15:15707862-15707977 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 97
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 44-159
Cow position: chr15:23696662-23696777 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 92
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 47-159
Cow position: chr15:8354289-8354177 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 89
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.