Cow genome map

Conread name: Ss1.1-Lym2-sn56_D12.f1.5

Conread position: 5-93
Cow position: chr20:19369324-19369235 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 77
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 16, 0

Conread position: 5-128
Cow position: chr20:4781409-4781533 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 9, 0

Conread position: 5-139
Cow position: chr20:14879634-14879765 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 9, 34

Conread position: 5-141
Cow position: chr20:22235162-22235296 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 16, 33

Conread position: 5-151
Cow position: chr20:3781579-3781436 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 12, 40

Conread position: 5-151
Cow position: chr20:15569103-15568955 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 108
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 5-151
Cow position: chr20:33177029-33177180 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 16, 60

Conread position: 5-151
Cow position: chr20:35958492-35958636 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 110
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 16, 38

Conread position: 5-157
Cow position: chr20:5636327-5636480 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 121
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 16, 0

Conread position: 5-157
Cow position: chr20:6602888-6603036 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 16, 34

Conread position: 5-157
Cow position: chr20:7442276-7442131 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 16, 36

Conread position: 5-157
Cow position: chr20:15312506-15312660 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 16, 0

Conread position: 5-157
Cow position: chr20:19313218-19313067 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 16, 85

Conread position: 5-157
Cow position: chr20:22704135-22704288 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 9, 0

Conread position: 5-157
Cow position: chr20:23505675-23505823 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 122
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 16, 56

Conread position: 5-157
Cow position: chr20:33435320-33435170 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 9, 51

Conread position: 5-157
Cow position: chr20:34240372-34240531 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 17, 0

Conread position: 5-157
Cow position: chr20:35797452-35797605 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 12, 73

Conread position: 5-157
Cow position: chr20:37200200-37200355 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 113
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 79, 0

Conread position: 5-157
Cow position: chr20:40511911-40511762 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 9, 40

Conread position: 5-157
Cow position: chr20:41309383-41309534 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 112
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 16, 86

Conread position: 5-159
Cow position: chr20:7806715-7806559 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 16, 123

Conread position: 5-159
Cow position: chr20:8556427-8556272 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 125
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 9, 0

Conread position: 5-159
Cow position: chr20:22445788-22445639 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 123
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 16, 38

Conread position: 5-162
Cow position: chr20:10884519-10884357 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 16, 152

Conread position: 6-155
Cow position: chr20:34325719-34325568 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 110
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 6-159
Cow position: chr20:10208650-10208804 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 8, 0

Conread position: 6-159
Cow position: chr20:28441174-28441327 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 8, 111

Conread position: 8-126
Cow position: chr20:32847203-32847321 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 13, 33

Conread position: 8-130
Cow position: chr20:22313308-22313189 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 13, 27

Conread position: 8-151
Cow position: chr20:32069007-32068862 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 107
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 8-152
Cow position: chr20:16935453-16935308 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 122
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 13, 0

Conread position: 8-154
Cow position: chr20:11550217-11550359 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 13, 44

Conread position: 8-157
Cow position: chr20:7659365-7659222 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 6, 37

Conread position: 8-157
Cow position: chr20:12996158-12996014 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 13, 37

Conread position: 8-157
Cow position: chr20:17733928-17733778 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 13, 55

Conread position: 8-157
Cow position: chr20:18837311-18837160 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 123
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 6, 0

Conread position: 8-157
Cow position: chr20:19146720-19146871 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 13, 0

Conread position: 8-157
Cow position: chr20:26996380-26996530 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 120
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 13, 0

Conread position: 8-159
Cow position: chr20:5826787-5826939 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 121
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 13, 0

Conread position: 8-159
Cow position: chr20:11340955-11340800 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 8-159
Cow position: chr20:11542433-11542285 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 7, 58

Conread position: 8-159
Cow position: chr20:13269473-13269620 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 121
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 13, 136

Conread position: 8-159
Cow position: chr20:14806736-14806884 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 121
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 13, 43

Conread position: 8-159
Cow position: chr20:36207652-36207803 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 120
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 13, 82

Conread position: 8-159
Cow position: chr20:39398338-39398484 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 47, 0

Conread position: 8-160
Cow position: chr20:13752090-13752233 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 13, 41

Conread position: 8-162
Cow position: chr20:8429591-8429751 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 14, 0

Conread position: 9-154
Cow position: chr20:36331577-36331431 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 12, 0

Conread position: 9-157
Cow position: chr20:23792458-23792606 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 123
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 5, 103

Conread position: 9-159
Cow position: chr20:20203067-20203214 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 5, 36

Conread position: 12-157
Cow position: chr20:7439001-7438857 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 63, 0

Conread position: 13-154
Cow position: chr20:39517859-39518000 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 14-155
Cow position: chr20:26748687-26748828 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 105
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 74, 36

Conread position: 16-150
Cow position: chr20:34597239-34597111 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 5, 0

Conread position: 20-130
Cow position: chr20:30710787-30710675 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 73, 0

Conread position: 20-154
Cow position: chr20:41089931-41089801 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 86, 0

Conread position: 20-155
Cow position: chr20:11741441-11741306 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 102
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 20-155
Cow position: chr20:28831827-28831963 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 67, 0

Conread position: 20-157
Cow position: chr20:6240666-6240525 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 20-157
Cow position: chr20:13994672-13994809 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 112
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 70, 129

Conread position: 20-157
Cow position: chr20:14433565-14433430 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 105
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 68, 24

Conread position: 20-157
Cow position: chr20:14735539-14735672 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 22, 0

Conread position: 20-157
Cow position: chr20:15235628-15235765 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 101
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 20-157
Cow position: chr20:24391843-24391976 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 66, 0

Conread position: 20-157
Cow position: chr20:32084222-32084085 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 114
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 20-159
Cow position: chr20:3254912-3255042 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 80, 0

Conread position: 20-159
Cow position: chr20:7210899-7211038 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 113
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 20-159
Cow position: chr20:10235715-10235852 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 113
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 131, 0

Conread position: 20-159
Cow position: chr20:12420758-12420621 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 120
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 29, 0

Conread position: 20-159
Cow position: chr20:18320932-18320793 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 113
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 20-159
Cow position: chr20:27408015-27407876 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 117
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 20-159
Cow position: chr20:28605068-28605207 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 112, 39

Conread position: 20-159
Cow position: chr20:36010652-36010794 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 67, 0

Conread position: 21-151
Cow position: chr20:4205827-4205958 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 55, 0

Conread position: 21-157
Cow position: chr20:22484724-22484859 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 72, 21

Conread position: 21-157
Cow position: chr20:39247773-39247907 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 42, 0

Conread position: 21-159
Cow position: chr20:6258200-6258064 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 108, 0

Conread position: 22-159
Cow position: chr20:8578109-8578246 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 114
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 23-159
Cow position: chr20:38768587-38768458 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 24-123
Cow position: chr20:22978185-22978283 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 82
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 25, 0

Conread position: 24-133
Cow position: chr20:40449873-40449984 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 89
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 48, 0

Conread position: 25-159
Cow position: chr20:3607090-3606964 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 27, 0

Conread position: 26-134
Cow position: chr20:7362835-7362942 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 26-159
Cow position: chr20:8307882-8308017 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 102
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 88, 0

Conread position: 29-157
Cow position: chr20:21928771-21928902 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 5, 0

Conread position: 29-159
Cow position: chr20:19363496-19363367 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 30, 110

Conread position: 30-151
Cow position: chr20:40256837-40256961 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 57, 0

Conread position: 31-157
Cow position: chr20:25162258-25162132 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 96
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 32-156
Cow position: chr20:34098087-34097962 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 98, 0

Conread position: 37-158
Cow position: chr20:35407739-35407860 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 92
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 0, 0

Conread position: 42-157
Cow position: chr20:11923362-11923246 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 51, 0

Conread position: 42-157
Cow position: chr20:20312865-20312750 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 89
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 0, 0

Conread position: 42-159
Cow position: chr20:32463640-32463523 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 44-150
Cow position: chr20:11043619-11043513 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 85
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 44-157
Cow position: chr20:13967377-13967263 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 44-159
Cow position: chr20:24069687-24069802 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 46-159
Cow position: chr20:28982584-28982697 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 89
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 49-159
Cow position: chr20:39267071-39266960 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 72, 0

Show alignments to all cow chromosomes.