Cow genome map

Conread name: Ss1.1-Lym2-sn56_D12.f1.5

Conread position: 3-159
Cow position: chr23:16881352-16881205 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 123
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 18, 11

Conread position: 3-159
Cow position: chr23:24867107-24867263 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 18, 5

Conread position: 5-121
Cow position: chr23:8698249-8698367 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 16, 0

Conread position: 5-121
Cow position: chr23:29742191-29742303 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 16, 81

Conread position: 5-128
Cow position: chr23:1610657-1610781 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 9, 0

Conread position: 5-128
Cow position: chr23:15287328-15287203 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 96
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 5-129
Cow position: chr23:29824260-29824135 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 5-133
Cow position: chr23:3262693-3262564 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 87, 0

Conread position: 5-151
Cow position: chr23:2055508-2055655 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 109
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 5-151
Cow position: chr23:20259371-20259223 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 110
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 5-151
Cow position: chr23:20437757-20437609 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 110
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 5-151
Cow position: chr23:20443492-20443344 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 109
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 5-152
Cow position: chr23:22530612-22530463 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 9, 0

Conread position: 5-156
Cow position: chr23:9595024-9594876 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 16, 38

Conread position: 5-157
Cow position: chr23:670426-670575 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 16, 102

Conread position: 5-157
Cow position: chr23:1924030-1923881 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 16, 38

Conread position: 5-157
Cow position: chr23:6244781-6244634 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 16, 105

Conread position: 5-157
Cow position: chr23:10554206-10554053 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 5-157
Cow position: chr23:11380452-11380297 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 9, 13

Conread position: 5-157
Cow position: chr23:13511539-13511690 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 111
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 111, 0

Conread position: 5-157
Cow position: chr23:13599147-13599300 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 16, 0

Conread position: 5-157
Cow position: chr23:16631070-16631225 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 16, 103

Conread position: 5-157
Cow position: chr23:18322614-18322460 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 9, 0

Conread position: 5-157
Cow position: chr23:30999381-30999534 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 17, 0

Conread position: 5-157
Cow position: chr23:38455379-38455226 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 82, 0

Conread position: 5-157
Cow position: chr23:40778068-40778222 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 111
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 5-158
Cow position: chr23:6367411-6367565 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 16, 92

Conread position: 5-158
Cow position: chr23:7845095-7845249 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 16, 0

Conread position: 5-159
Cow position: chr23:1290099-1290251 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 9, 53

Conread position: 5-159
Cow position: chr23:1878065-1877916 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 17, 50

Conread position: 5-159
Cow position: chr23:1883199-1883350 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 16, 44

Conread position: 5-159
Cow position: chr23:2259794-2259638 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 9, 0

Conread position: 5-159
Cow position: chr23:2282372-2282217 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 17, 0

Conread position: 5-159
Cow position: chr23:4980738-4980588 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 16, 40

Conread position: 5-159
Cow position: chr23:11045290-11045443 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 16, 22

Conread position: 5-159
Cow position: chr23:14191355-14191510 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 9, 0

Conread position: 5-159
Cow position: chr23:18902245-18902090 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 16, 0

Conread position: 5-159
Cow position: chr23:26986468-26986315 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 111
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 134, 0

Conread position: 5-159
Cow position: chr23:29034119-29034274 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 16, 0

Conread position: 5-162
Cow position: chr23:4338801-4338651 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 9, 124

Conread position: 5-162
Cow position: chr23:27996939-27997094 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 16, 54

Conread position: 7-159
Cow position: chr23:40891169-40891317 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 7, 48

Conread position: 8-125
Cow position: chr23:5395616-5395499 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 13, 92

Conread position: 8-141
Cow position: chr23:6767699-6767830 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 13, 50

Conread position: 8-144
Cow position: chr23:30585853-30585719 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 13, 82

Conread position: 8-145
Cow position: chr23:41348840-41348701 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 6, 0

Conread position: 8-151
Cow position: chr23:14164591-14164451 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 13, 28

Conread position: 8-157
Cow position: chr23:1337496-1337345 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 8-157
Cow position: chr23:5451130-5451280 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 13, 0

Conread position: 8-157
Cow position: chr23:20057058-20056911 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 13, 50

Conread position: 8-159
Cow position: chr23:1585580-1585430 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 6, 122

Conread position: 8-159
Cow position: chr23:1690597-1690745 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 13, 131

Conread position: 8-159
Cow position: chr23:1776822-1776676 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 122
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 13, 27

Conread position: 8-159
Cow position: chr23:21452924-21452774 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 13, 35

Conread position: 8-159
Cow position: chr23:29459280-29459133 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 121
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 6, 50

Conread position: 8-159
Cow position: chr23:29626223-29626372 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 6, 28

Conread position: 8-159
Cow position: chr23:33717735-33717583 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 122
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 6, 0

Conread position: 9-157
Cow position: chr23:1068503-1068357 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 13, 31

Conread position: 9-157
Cow position: chr23:10014345-10014494 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 10-159
Cow position: chr23:5426238-5426388 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 120
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 13, 0

Conread position: 11-157
Cow position: chr23:1429981-1429845 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 12-159
Cow position: chr23:2457275-2457420 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 9, 118

Conread position: 19-156
Cow position: chr23:2488164-2488031 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 109
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 81, 0

Conread position: 20-145
Cow position: chr23:22399223-22399347 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 112, 0

Conread position: 20-150
Cow position: chr23:26632621-26632751 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 20-151
Cow position: chr23:361094-360966 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 45, 0

Conread position: 20-151
Cow position: chr23:1885354-1885222 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 68, 0

Conread position: 20-155
Cow position: chr23:221888-222022 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 112
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 54, 0

Conread position: 20-156
Cow position: chr23:344356-344220 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 111
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 20-156
Cow position: chr23:9268411-9268547 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 112
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 20-157
Cow position: chr23:18296629-18296764 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 66, 22

Conread position: 20-158
Cow position: chr23:3394675-3394539 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 94, 0

Conread position: 20-159
Cow position: chr23:11473685-11473551 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 15, 0

Conread position: 20-159
Cow position: chr23:21764739-21764875 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 115
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 37, 0

Conread position: 21-157
Cow position: chr23:186997-187133 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 100
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 21-158
Cow position: chr23:534052-534184 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 115
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 23, 0

Conread position: 21-159
Cow position: chr23:1700733-1700863 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 68, 0

Conread position: 21-159
Cow position: chr23:35254414-35254281 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 104
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 21-160
Cow position: chr23:1640634-1640770 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 17, 101

Conread position: 22-159
Cow position: chr23:22588446-22588307 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 29, 23

Conread position: 23-157
Cow position: chr23:37065662-37065798 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 65, 0

Conread position: 23-157
Cow position: chr23:39752939-39753072 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 112, 0

Conread position: 23-167
Cow position: chr23:24509523-24509668 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 120
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 138, 0

Conread position: 29-136
Cow position: chr23:27029757-27029864 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 85
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 30-157
Cow position: chr23:3247415-3247540 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 18, 0

Conread position: 33-157
Cow position: chr23:26949030-26949155 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 95
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 54, 0

Conread position: 34-159
Cow position: chr23:7360950-7361074 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 96
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 37-151
Cow position: chr23:1767665-1767779 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 91
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 77, 40

Conread position: 37-162
Cow position: chr23:16563676-16563801 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 42-159
Cow position: chr23:36309261-36309378 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 43-159
Cow position: chr23:9599337-9599447 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 86, 0

Conread position: 50-159
Cow position: chr23:21502789-21502682 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 88
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 74, 0

Conread position: 65-159
Cow position: chr23:12363755-12363661 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 80
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 76-159
Cow position: chr23:5795352-5795435 (view UCSC Genome Browser custom track)
Alignm length: 84
Alignm identity: 74
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.