Cow genome map

Conread name: Ss1.1-Lym2-sn56_D12.f1.5

Conread position: 5-144
Cow position: chr24:18732343-18732205 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 120, 12

Conread position: 5-146
Cow position: chr24:34532903-34533046 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 5-153
Cow position: chr24:201855-201715 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 17, 60

Conread position: 5-157
Cow position: chr24:7913778-7913933 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 5-157
Cow position: chr24:7917589-7917433 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 5-157
Cow position: chr24:11006995-11007149 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 16, 0

Conread position: 5-157
Cow position: chr24:18485220-18485068 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 16, 57

Conread position: 5-157
Cow position: chr24:27039818-27039976 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 9, 0

Conread position: 5-157
Cow position: chr24:27906214-27906367 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 16, 108

Conread position: 5-157
Cow position: chr24:28721667-28721820 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 18, 52

Conread position: 5-157
Cow position: chr24:29596036-29595880 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 5-157
Cow position: chr24:29781941-29782093 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 16, 20

Conread position: 5-157
Cow position: chr24:35794960-35794809 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 124
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 16, 125

Conread position: 5-159
Cow position: chr24:3430515-3430664 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 16, 20

Conread position: 5-159
Cow position: chr24:11876663-11876816 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 122
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 16, 44

Conread position: 5-159
Cow position: chr24:17363869-17363718 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 9, 61

Conread position: 5-159
Cow position: chr24:20024387-20024547 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 16, 0

Conread position: 5-159
Cow position: chr24:23695117-23694964 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 16, 111

Conread position: 5-159
Cow position: chr24:35675323-35675475 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 16, 72

Conread position: 5-159
Cow position: chr24:38347460-38347616 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 17, 42

Conread position: 5-162
Cow position: chr24:25320769-25320930 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 16, 0

Conread position: 5-163
Cow position: chr24:18734576-18734416 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 16, 0

Conread position: 5-206
Cow position: chr24:27341244-27341041 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 144
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 16, 106

Conread position: 6-154
Cow position: chr24:39219066-39218914 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 15, 41

Conread position: 8-155
Cow position: chr24:7748672-7748523 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 8-155
Cow position: chr24:32360745-32360594 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 8-157
Cow position: chr24:18324399-18324551 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 6, 0

Conread position: 8-157
Cow position: chr24:19658331-19658486 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 8-157
Cow position: chr24:25194049-25194199 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 13, 54

Conread position: 8-157
Cow position: chr24:30235652-30235796 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 6, 107

Conread position: 8-158
Cow position: chr24:20874459-20874610 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 125
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 13, 0

Conread position: 8-158
Cow position: chr24:22079239-22079392 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 13, 0

Conread position: 8-159
Cow position: chr24:5141723-5141875 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 125
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 13, 0

Conread position: 8-159
Cow position: chr24:11886940-11887089 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 124
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 6, 96

Conread position: 8-159
Cow position: chr24:14279671-14279824 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 13, 141

Conread position: 8-159
Cow position: chr24:29540128-29539976 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 13, 0

Conread position: 8-159
Cow position: chr24:39483256-39483408 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 120
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 13, 0

Conread position: 8-159
Cow position: chr24:39833733-39833581 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 13, 0

Conread position: 8-162
Cow position: chr24:37246435-37246277 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 6, 10

Conread position: 10-159
Cow position: chr24:36404361-36404213 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 5, 0

Conread position: 15-157
Cow position: chr24:32758973-32758830 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 105
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 98, 0

Conread position: 15-159
Cow position: chr24:27941219-27941078 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 49, 0

Conread position: 16-158
Cow position: chr24:6132085-6131945 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 106
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 121, 0

Conread position: 18-162
Cow position: chr24:39143398-39143545 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 80, 0

Conread position: 19-159
Cow position: chr24:11734517-11734651 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 99, 95

Conread position: 19-159
Cow position: chr24:31811979-31812118 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 107, 120

Conread position: 20-150
Cow position: chr24:18474953-18474823 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 106
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 20-151
Cow position: chr24:33724055-33723923 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 31, 73

Conread position: 20-157
Cow position: chr24:10125657-10125801 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 72, 0

Conread position: 20-157
Cow position: chr24:31324075-31324211 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 104
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 99, 28

Conread position: 20-157
Cow position: chr24:43635230-43635364 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 102, 0

Conread position: 20-159
Cow position: chr24:211777-211916 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 20-159
Cow position: chr24:6487715-6487848 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 112
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 94, 0

Conread position: 20-159
Cow position: chr24:7001272-7001135 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 113
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 104, 0

Conread position: 20-159
Cow position: chr24:28062744-28062882 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 120
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 131, 0

Conread position: 20-159
Cow position: chr24:28990361-28990493 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 113
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 41, 0

Conread position: 20-159
Cow position: chr24:39226794-39226931 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 84, 0

Conread position: 20-159
Cow position: chr24:39842057-39841918 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 21-147
Cow position: chr24:18374571-18374697 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 105
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 21-154
Cow position: chr24:30314239-30314103 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 74, 0

Conread position: 21-156
Cow position: chr24:41755659-41755791 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 25, 0

Conread position: 21-157
Cow position: chr24:17955650-17955512 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 104
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 66, 0

Conread position: 21-157
Cow position: chr24:42825701-42825565 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 21-159
Cow position: chr24:10499007-10499143 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 94, 0

Conread position: 21-159
Cow position: chr24:18025175-18025038 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 68, 0

Conread position: 21-159
Cow position: chr24:28496790-28496654 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 130, 0

Conread position: 21-159
Cow position: chr24:31359119-31359255 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 117
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 99, 0

Conread position: 22-146
Cow position: chr24:36486264-36486139 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 68, 0

Conread position: 22-157
Cow position: chr24:40673639-40673503 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 102
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 84, 0

Conread position: 24-154
Cow position: chr24:5754638-5754762 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 107
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 24, 0

Conread position: 25-157
Cow position: chr24:25677834-25677967 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 100
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 88, 0

Conread position: 29-155
Cow position: chr24:18695421-18695547 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 5, 34

Conread position: 29-157
Cow position: chr24:38375085-38375214 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 99
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 5, 0

Conread position: 29-159
Cow position: chr24:30178036-30178166 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 99
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 31-159
Cow position: chr24:30897735-30897607 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 32-156
Cow position: chr24:24250531-24250656 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 8, 0

Conread position: 33-158
Cow position: chr24:37650475-37650601 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 95, 0

Conread position: 37-159
Cow position: chr24:29180698-29180819 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 9, 0

Conread position: 44-157
Cow position: chr24:33222126-33222013 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 89
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 44-167
Cow position: chr24:29027860-29027983 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 48-152
Cow position: chr24:27465757-27465653 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 85
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 52-159
Cow position: chr24:37037723-37037828 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 91
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 58-159
Cow position: chr24:18357223-18357124 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 88
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 53, 0

Show alignments to all cow chromosomes.