Cow genome map

Conread name: Ss1.1-Lym2-sn56_D12.f1.5

Conread position: 5-102
Cow position: chr25:9842802-9842900 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 82
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 5-119
Cow position: chr25:19478490-19478604 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 92
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 16, 95

Conread position: 5-127
Cow position: chr25:10330600-10330476 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 103
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 16, 93

Conread position: 5-133
Cow position: chr25:16921992-16921864 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 16, 112

Conread position: 5-133
Cow position: chr25:21266812-21266937 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 16, 38

Conread position: 5-135
Cow position: chr25:17704551-17704683 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 100
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 5-148
Cow position: chr25:18448639-18448780 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 9, 85

Conread position: 5-151
Cow position: chr25:7329346-7329492 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 118
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 16, 125

Conread position: 5-151
Cow position: chr25:14196658-14196805 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 107
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 5-151
Cow position: chr25:17342251-17342401 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 9, 13

Conread position: 5-153
Cow position: chr25:1735514-1735366 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 16, 83

Conread position: 5-154
Cow position: chr25:26087317-26087469 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 16, 0

Conread position: 5-155
Cow position: chr25:20460925-20461077 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 119
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 16, 0

Conread position: 5-155
Cow position: chr25:23324562-23324410 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 112
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 9, 13

Conread position: 5-157
Cow position: chr25:6424786-6424636 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 12, 103

Conread position: 5-157
Cow position: chr25:6474297-6474145 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 17, 85

Conread position: 5-157
Cow position: chr25:7216630-7216781 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 17, 43

Conread position: 5-157
Cow position: chr25:25754195-25754045 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 9, 59

Conread position: 5-157
Cow position: chr25:28188147-28187995 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 16, 53

Conread position: 5-157
Cow position: chr25:36026809-36026960 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 16, 43

Conread position: 5-159
Cow position: chr25:8120578-8120734 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 16, 149

Conread position: 5-159
Cow position: chr25:8347311-8347462 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 16, 49

Conread position: 5-159
Cow position: chr25:12899556-12899710 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 16, 75

Conread position: 5-159
Cow position: chr25:17566389-17566541 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 16, 38

Conread position: 5-159
Cow position: chr25:20023591-20023436 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 123
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 12, 0

Conread position: 5-159
Cow position: chr25:21191289-21191440 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 10, 106

Conread position: 5-159
Cow position: chr25:36033238-36033391 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 16, 58

Conread position: 5-162
Cow position: chr25:15319722-15319875 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 16, 29

Conread position: 5-164
Cow position: chr25:21209146-21208995 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 16, 109

Conread position: 6-157
Cow position: chr25:5514809-5514962 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 7-151
Cow position: chr25:12817176-12817321 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 8-151
Cow position: chr25:7306103-7306247 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 105
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 8-151
Cow position: chr25:21895081-21894941 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 6, 35

Conread position: 8-155
Cow position: chr25:11585323-11585466 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 6, 87

Conread position: 8-157
Cow position: chr25:20133510-20133361 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 13, 36

Conread position: 8-157
Cow position: chr25:35347709-35347859 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 6, 0

Conread position: 8-158
Cow position: chr25:2624610-2624759 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 6, 122

Conread position: 8-159
Cow position: chr25:7800941-7801092 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 123
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 13, 109

Conread position: 8-159
Cow position: chr25:12778727-12778581 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 123
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 13, 107

Conread position: 8-159
Cow position: chr25:19679147-19679297 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 123
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 13, 99

Conread position: 8-159
Cow position: chr25:20785779-20785632 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 121
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 13, 40

Conread position: 8-159
Cow position: chr25:21193139-21192981 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 124
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 13, 0

Conread position: 8-159
Cow position: chr25:30279402-30279257 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 15, 67

Conread position: 8-159
Cow position: chr25:33550310-33550461 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 13, 92

Conread position: 8-159
Cow position: chr25:36036975-36036828 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 6, 34

Conread position: 8-162
Cow position: chr25:4547915-4547761 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 9, 85

Conread position: 8-171
Cow position: chr25:25861555-25861392 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 13, 90

Conread position: 9-133
Cow position: chr25:12097648-12097769 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 5, 64

Conread position: 13-159
Cow position: chr25:25051573-25051427 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 91, 50

Conread position: 15-128
Cow position: chr25:12117179-12117066 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 88
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 15-157
Cow position: chr25:18905694-18905837 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 116
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 73, 0

Conread position: 19-155
Cow position: chr25:13672205-13672343 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 68, 0

Conread position: 19-159
Cow position: chr25:32453581-32453445 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 115
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 110, 0

Conread position: 20-148
Cow position: chr25:26238689-26238813 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 24, 0

Conread position: 20-155
Cow position: chr25:10365934-10365803 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 73, 16

Conread position: 20-155
Cow position: chr25:14791570-14791703 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 14, 0

Conread position: 20-155
Cow position: chr25:29136342-29136208 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 68, 103

Conread position: 20-157
Cow position: chr25:4681051-4681182 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 109
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 93, 0

Conread position: 20-157
Cow position: chr25:7581610-7581473 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 20-157
Cow position: chr25:9961359-9961219 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 68, 0

Conread position: 20-157
Cow position: chr25:23323020-23323156 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 73, 37

Conread position: 20-157
Cow position: chr25:26089996-26089865 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 109
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 28, 0

Conread position: 20-157
Cow position: chr25:31732918-31732782 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 20-157
Cow position: chr25:35110312-35110174 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 73, 0

Conread position: 20-157
Cow position: chr25:36081691-36081828 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 20-157
Cow position: chr25:36779310-36779448 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 103
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 67, 0

Conread position: 20-158
Cow position: chr25:36746628-36746496 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 96, 0

Conread position: 20-159
Cow position: chr25:5837148-5837012 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 90, 0

Conread position: 20-159
Cow position: chr25:7750268-7750403 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 36, 96

Conread position: 20-159
Cow position: chr25:11662002-11661863 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 112
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 20-159
Cow position: chr25:19129671-19129807 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 124, 17

Conread position: 21-156
Cow position: chr25:38972651-38972786 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 21-158
Cow position: chr25:7641635-7641502 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 99, 0

Conread position: 21-162
Cow position: chr25:18894904-18894763 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 129, 125

Conread position: 22-162
Cow position: chr25:38569646-38569510 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 23-157
Cow position: chr25:13272390-13272518 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 77, 0

Conread position: 24-157
Cow position: chr25:5341473-5341604 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 100
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 35, 0

Conread position: 29-157
Cow position: chr25:15440957-15440825 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 58, 0

Conread position: 29-159
Cow position: chr25:11978877-11978749 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 79, 0

Conread position: 29-159
Cow position: chr25:20211255-20211128 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 29-159
Cow position: chr25:24669609-24669483 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 106
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 5, 36

Conread position: 33-159
Cow position: chr25:2136178-2136307 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 99
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 38-157
Cow position: chr25:21042215-21042333 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 40-159
Cow position: chr25:32191505-32191622 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 86, 0

Conread position: 42-128
Cow position: chr25:2110913-2110999 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 76
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 42-159
Cow position: chr25:41151124-41151008 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 84, 0

Conread position: 43-159
Cow position: chr25:26679065-26679181 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 96
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 44-164
Cow position: chr25:6961315-6961196 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 34, 0

Conread position: 48-157
Cow position: chr25:35333000-35333110 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 88
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 45, 0

Conread position: 57-157
Cow position: chr25:21668097-21668197 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 84
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.