Cow genome map

Conread name: Ss1.1-Lym2-sn56_D12.f1.5

Conread position: 5-129
Cow position: chr27:6674393-6674266 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 16, 113

Conread position: 5-141
Cow position: chr27:16284625-16284489 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 103
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 16, 134

Conread position: 5-143
Cow position: chr27:18030904-18031046 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 5-143
Cow position: chr27:29831534-29831673 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 16, 52

Conread position: 5-147
Cow position: chr27:28496222-28496366 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 106
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 5-154
Cow position: chr27:19388171-19388020 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 119
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 9, 0

Conread position: 5-154
Cow position: chr27:27055730-27055580 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 16, 0

Conread position: 5-155
Cow position: chr27:27640839-27640997 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 9, 0

Conread position: 5-155
Cow position: chr27:30988950-30988801 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 16, 54

Conread position: 5-157
Cow position: chr27:8629719-8629870 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 16, 42

Conread position: 5-157
Cow position: chr27:15643328-15643174 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 16, 0

Conread position: 5-157
Cow position: chr27:19896909-19896758 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 9, 13

Conread position: 5-157
Cow position: chr27:21350863-21351018 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 113
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 5-157
Cow position: chr27:27064287-27064436 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 17, 90

Conread position: 5-157
Cow position: chr27:30362396-30362249 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 16, 52

Conread position: 5-157
Cow position: chr27:30868586-30868737 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 16, 85

Conread position: 5-158
Cow position: chr27:16620144-16619990 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 16, 0

Conread position: 5-158
Cow position: chr27:22771910-22771753 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 114
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 5-159
Cow position: chr27:11535944-11536102 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 16, 105

Conread position: 5-159
Cow position: chr27:15454364-15454216 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 16, 64

Conread position: 5-159
Cow position: chr27:16871763-16871912 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 17, 53

Conread position: 5-159
Cow position: chr27:22035221-22035374 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 16, 125

Conread position: 5-159
Cow position: chr27:27019948-27020103 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 9, 38

Conread position: 5-159
Cow position: chr27:30890443-30890288 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 9, 13

Conread position: 5-161
Cow position: chr27:19718076-19717923 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 9, 44

Conread position: 5-162
Cow position: chr27:6500217-6500056 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 5-162
Cow position: chr27:10980016-10979861 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 16, 104

Conread position: 5-162
Cow position: chr27:29431613-29431460 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 9, 108

Conread position: 5-170
Cow position: chr27:22418612-22418777 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 130
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 17, 73

Conread position: 6-148
Cow position: chr27:27460420-27460563 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 107
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 15, 0

Conread position: 6-159
Cow position: chr27:21668973-21669118 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 8, 37

Conread position: 8-122
Cow position: chr27:26322503-26322388 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 8-130
Cow position: chr27:21452920-21453048 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 13, 0

Conread position: 8-144
Cow position: chr27:13375882-13376013 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 13, 34

Conread position: 8-155
Cow position: chr27:9090652-9090798 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 13, 64

Conread position: 8-155
Cow position: chr27:14435695-14435546 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 13, 0

Conread position: 8-155
Cow position: chr27:26489752-26489900 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 110
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 6, 0

Conread position: 8-157
Cow position: chr27:15858941-15859084 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 13, 41

Conread position: 8-157
Cow position: chr27:20592133-20591984 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 13, 35

Conread position: 8-157
Cow position: chr27:27843843-27843992 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 13, 92

Conread position: 8-158
Cow position: chr27:15668617-15668767 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 13, 144

Conread position: 8-159
Cow position: chr27:14670231-14670387 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 125
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 13, 0

Conread position: 8-159
Cow position: chr27:19685565-19685710 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 119
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 13, 51

Conread position: 8-159
Cow position: chr27:22220703-22220557 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 121
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 6, 80

Conread position: 8-159
Cow position: chr27:26426358-26426208 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 6, 131

Conread position: 8-170
Cow position: chr27:13198066-13197910 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 13, 95

Conread position: 8-182
Cow position: chr27:14902499-14902674 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 14, 67

Conread position: 9-158
Cow position: chr27:4812728-4812878 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 119
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 5, 0

Conread position: 9-159
Cow position: chr27:22547256-22547407 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 122
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 12, 0

Conread position: 12-159
Cow position: chr27:16103947-16103809 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 14-159
Cow position: chr27:20789226-20789375 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 11, 126

Conread position: 16-157
Cow position: chr27:20354725-20354587 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 105
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 18-154
Cow position: chr27:23882235-23882372 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 69, 0

Conread position: 20-128
Cow position: chr27:7412519-7412409 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 82, 0

Conread position: 20-149
Cow position: chr27:13252146-13252017 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 97
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 20-154
Cow position: chr27:26509020-26509155 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 67, 0

Conread position: 20-156
Cow position: chr27:27245214-27245349 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 29, 0

Conread position: 20-157
Cow position: chr27:154505-154368 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 20-157
Cow position: chr27:2957543-2957408 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 21, 115

Conread position: 20-157
Cow position: chr27:13875871-13875734 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 20-157
Cow position: chr27:17397310-17397448 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 73, 0

Conread position: 20-157
Cow position: chr27:22268641-22268504 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 20-157
Cow position: chr27:26440920-26441058 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 93, 0

Conread position: 20-157
Cow position: chr27:28931651-28931791 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 105
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 64, 0

Conread position: 20-158
Cow position: chr27:8353613-8353476 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 96, 0

Conread position: 20-159
Cow position: chr27:427109-426971 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 90, 132

Conread position: 20-159
Cow position: chr27:4673157-4673020 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 118
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 32, 0

Conread position: 20-159
Cow position: chr27:16589576-16589712 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 113
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 35, 0

Conread position: 20-160
Cow position: chr27:29312533-29312672 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 69, 0

Conread position: 20-162
Cow position: chr27:26427992-26428135 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 67, 0

Conread position: 20-167
Cow position: chr27:13410033-13410182 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 108
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 68, 0

Conread position: 21-157
Cow position: chr27:28038202-28038338 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 102
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 21-158
Cow position: chr27:24321325-24321188 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 112
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 21-159
Cow position: chr27:30792801-30792937 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 59, 0

Conread position: 22-149
Cow position: chr27:28018471-28018344 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 65, 58

Conread position: 22-159
Cow position: chr27:1123169-1123032 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 115
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 22-159
Cow position: chr27:17331637-17331500 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 22-159
Cow position: chr27:28206932-28206802 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 105, 0

Conread position: 23-141
Cow position: chr27:12429542-12429419 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 6, 0

Conread position: 29-158
Cow position: chr27:815497-815368 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 29-159
Cow position: chr27:22171431-22171301 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 29-159
Cow position: chr27:28061632-28061759 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 5, 101

Conread position: 31-157
Cow position: chr27:8168300-8168428 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 98
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 32-158
Cow position: chr27:16478213-16478337 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 32-159
Cow position: chr27:27136391-27136518 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 96
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 33-151
Cow position: chr27:14343339-14343457 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 92
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 33-159
Cow position: chr27:1498444-1498318 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 104
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 33-159
Cow position: chr27:10395134-10395258 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 65, 24

Conread position: 42-152
Cow position: chr27:28164288-28164398 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 88
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 42-158
Cow position: chr27:4829685-4829799 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 68, 0

Conread position: 42-162
Cow position: chr27:6074039-6073918 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 78, 0

Conread position: 44-159
Cow position: chr27:25411401-25411519 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 66, 0

Conread position: 46-159
Cow position: chr27:16626010-16625899 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 5, 0

Conread position: 53-159
Cow position: chr27:23511096-23510991 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 87
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 7, 0

Show alignments to all cow chromosomes.