Cow genome map
| Conread name: | Ss1.1-Lym2-sn56_D12.f1.5 |
| Conread position: | 5-130 |
| Cow position: | chr29:5098959-5098835 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 55 |
| Conread position: | 5-142 |
| Cow position: | chr29:28446457-28446319 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 5-151 |
| Cow position: | chr29:7041036-7040898 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 16, 67 |
| Conread position: | 5-151 |
| Cow position: | chr29:16609540-16609688 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 5-151 |
| Cow position: | chr29:16657488-16657636 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 5-152 |
| Cow position: | chr29:36216920-36217064 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 16, 50 |
| Conread position: | 5-155 |
| Cow position: | chr29:24080246-24080094 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 5-156 |
| Cow position: | chr29:35501846-35501701 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 9, 48 |
| Conread position: | 5-157 |
| Cow position: | chr29:22778379-22778225 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 5-159 |
| Cow position: | chr29:3100459-3100303 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 5-159 |
| Cow position: | chr29:11562417-11562567 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 16, 60 |
| Conread position: | 5-159 |
| Cow position: | chr29:18735840-18735687 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 16, 53 |
| Conread position: | 5-159 |
| Cow position: | chr29:24103746-24103592 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 16, 147 |
| Conread position: | 5-159 |
| Cow position: | chr29:26615922-26615768 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 18, 42 |
| Conread position: | 5-159 |
| Cow position: | chr29:40166045-40166194 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 63, 125 |
| Conread position: | 5-200 |
| Cow position: | chr29:40096759-40096955 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 9, 116 |
| Conread position: | 6-156 |
| Cow position: | chr29:28868436-28868586 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 8, 138 |
| Conread position: | 6-156 |
| Cow position: | chr29:40117372-40117521 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 15, 65 |
| Conread position: | 6-157 |
| Cow position: | chr29:16756858-16757010 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 147 |
| Conread position: | 6-170 |
| Cow position: | chr29:2532865-2533024 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 108 |
| Conread position: | 7-157 |
| Cow position: | chr29:1022094-1022247 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 8-146 |
| Cow position: | chr29:5892652-5892783 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 6, 65 |
| Conread position: | 8-157 |
| Cow position: | chr29:87216-87064 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 8-157 |
| Cow position: | chr29:4520141-4520287 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 13, 35 |
| Conread position: | 8-157 |
| Cow position: | chr29:19338785-19338939 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 13, 87 |
| Conread position: | 8-158 |
| Cow position: | chr29:22714922-22714771 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 8-159 |
| Cow position: | chr29:4480370-4480218 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 8-159 |
| Cow position: | chr29:17607222-17607369 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 13, 108 |
| Conread position: | 8-159 |
| Cow position: | chr29:29974846-29974997 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 13, 90 |
| Conread position: | 8-161 |
| Cow position: | chr29:1556738-1556887 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 13, 37 |
| Conread position: | 8-162 |
| Cow position: | chr29:17795226-17795382 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 9-145 |
| Cow position: | chr29:26985031-26985168 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 9-162 |
| Cow position: | chr29:38581774-38581934 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 10-146 |
| Cow position: | chr29:10659535-10659397 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 10-157 |
| Cow position: | chr29:15940827-15940682 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 12-157 |
| Cow position: | chr29:732428-732570 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 117, 65 |
| Conread position: | 13-159 |
| Cow position: | chr29:5186687-5186543 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 14-157 |
| Cow position: | chr29:21534867-21534724 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 100, 67 |
| Conread position: | 15-159 |
| Cow position: | chr29:21000453-21000597 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-155 |
| Cow position: | chr29:17041463-17041600 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 70, 25 |
| Conread position: | 19-159 |
| Cow position: | chr29:28197190-28197053 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 54, 35 |
| Conread position: | 20-151 |
| Cow position: | chr29:24952503-24952634 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-157 |
| Cow position: | chr29:8125776-8125639 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-157 |
| Cow position: | chr29:9718954-9718818 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 20-157 |
| Cow position: | chr29:30188522-30188387 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 73, 37 |
| Conread position: | 20-158 |
| Cow position: | chr29:23984144-23984005 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 20-159 |
| Cow position: | chr29:10818618-10818481 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 20-159 |
| Cow position: | chr29:19762091-19762224 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 20-159 |
| Cow position: | chr29:20903469-20903333 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 20-159 |
| Cow position: | chr29:25737597-25737464 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 20-159 |
| Cow position: | chr29:36530682-36530820 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 135, 118 |
| Conread position: | 21-156 |
| Cow position: | chr29:12679974-12680109 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-157 |
| Cow position: | chr29:32963374-32963508 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 21-158 |
| Cow position: | chr29:28166398-28166262 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 17, 109 |
| Conread position: | 21-159 |
| Cow position: | chr29:4875077-4874934 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 21-159 |
| Cow position: | chr29:23244064-23243926 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-159 |
| Cow position: | chr29:32211240-32211104 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 21-159 |
| Cow position: | chr29:43009265-43009128 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 21-159 |
| Cow position: | chr29:43328458-43328594 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 22-159 |
| Cow position: | chr29:25091929-25092064 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 23-151 |
| Cow position: | chr29:26771254-26771380 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 24-159 |
| Cow position: | chr29:27588743-27588875 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 9, 26 |
| Conread position: | 25-155 |
| Cow position: | chr29:11052919-11053050 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 25-159 |
| Cow position: | chr29:9709518-9709649 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 29-157 |
| Cow position: | chr29:4065909-4066038 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 29-157 |
| Cow position: | chr29:4334550-4334678 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 7, 111 |
| Conread position: | 29-157 |
| Cow position: | chr29:9686178-9686050 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-157 |
| Cow position: | chr29:44682273-44682147 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 29-159 |
| Cow position: | chr29:45005799-45005677 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 32-163 |
| Cow position: | chr29:19125170-19125302 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 33-151 |
| Cow position: | chr29:3502885-3502998 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 37-155 |
| Cow position: | chr29:34773902-34773784 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 38-159 |
| Cow position: | chr29:22162422-22162299 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 40-157 |
| Cow position: | chr29:31674465-31674580 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 48-163 |
| Cow position: | chr29:39111472-39111357 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 50-158 |
| Cow position: | chr29:29314810-29314702 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.