Cow genome map
| Conread name: | Ss1.1-Lym2-sn59_F12.f.5 |
| Conread position: | 1-229 |
| Cow position: | chr5:54889991-54890215 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 172 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-231 |
| Cow position: | chr5:49136264-49136491 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-242 |
| Cow position: | chr5:48397419-48397646 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-251 |
| Cow position: | chr5:50959286-50959042 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-251 |
| Cow position: | chr5:52480376-52480128 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 20 |
| Conread position: | 1-303 |
| Cow position: | chr5:9221509-9221212 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 109, 20 |
| Conread position: | 2-130 |
| Cow position: | chr5:3460821-3460949 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 123, 19 |
| Conread position: | 2-182 |
| Cow position: | chr5:35084467-35084294 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 119, 21 |
| Conread position: | 2-216 |
| Cow position: | chr5:29738167-29738374 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 167 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 97, 21 |
| Conread position: | 2-242 |
| Cow position: | chr5:10043887-10044119 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 183 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 2-251 |
| Cow position: | chr5:61070183-61069936 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 2-253 |
| Cow position: | chr5:35447156-35447390 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 192 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 2-253 |
| Cow position: | chr5:36721671-36721427 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 119, 26 |
| Conread position: | 2-253 |
| Cow position: | chr5:46293524-46293278 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 2-253 |
| Cow position: | chr5:47759262-47759506 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 2-254 |
| Cow position: | chr5:31117047-31116807 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 14 |
| Conread position: | 4-269 |
| Cow position: | chr5:41965030-41964768 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 20 |
| Conread position: | 5-253 |
| Cow position: | chr5:5228809-5228571 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 5-254 |
| Cow position: | chr5:14305186-14304944 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 7-251 |
| Cow position: | chr5:27476053-27475815 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 8-253 |
| Cow position: | chr5:47383237-47383002 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 186 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 10-251 |
| Cow position: | chr5:6597760-6597522 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 30-251 |
| Cow position: | chr5:71057003-71057225 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 39, 158 |
| Conread position: | 31-269 |
| Cow position: | chr5:33059725-33059490 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 134, 43 |
| Conread position: | 43-214 |
| Cow position: | chr5:22772614-22772791 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 36, 105 |
| Conread position: | 64-253 |
| Cow position: | chr5:58304619-58304807 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 150 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 88-253 |
| Cow position: | chr5:29512399-29512563 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 86, 0 |
Show alignments to all cow chromosomes.