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Cow genome map

           
Conread name:
           
Ss1.1-Lym2-sn70_D11.f.5
        

               
Conread position:
               
572-979
               

               
Cow position:
               
chr25:448418-448000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
110, 216
               

               
Conread position:
               
575-1003
               

               
Cow position:
               
chr25:13443654-13443224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
83, 47
               

               
Conread position:
               
604-1006
               

               
Cow position:
               
chr25:26137038-26136634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
36, 44
               

               
Conread position:
               
643-1006
               

               
Cow position:
               
chr25:41151135-41150778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
265, 95
               

               
Conread position:
               
645-1003
               

               
Cow position:
               
chr25:36081704-36082050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
655-830
               

               
Cow position:
               
chr25:5514847-5515025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
655-926
               

               
Cow position:
               
chr25:12778691-12778435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
655-944
               

               
Cow position:
               
chr25:26654749-26655029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
54, 21
               

               
Conread position:
               
656-1003
               

               
Cow position:
               
chr25:7306135-7306473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
19, 131
               

               
Conread position:
               
657-831
               

               
Cow position:
               
chr25:11054744-11054916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
123, 93
               

               
Conread position:
               
658-930
               

               
Cow position:
               
chr25:12319507-12319243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
121, 139
               

               
Conread position:
               
658-951
               

               
Cow position:
               
chr25:34169789-34170077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
17, 74
               

               
Conread position:
               
658-1003
               

               
Cow position:
               
chr25:18721275-18720944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
26, 70
               

               
Conread position:
               
659-899
               

               
Cow position:
               
chr25:34379264-34379026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
131, 39
               

               
Conread position:
               
659-999
               

               
Cow position:
               
chr25:40321449-40321117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
13, 47
               

               
Conread position:
               
659-1003
               

               
Cow position:
               
chr25:11585363-11585712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
127, 47
               

               
Conread position:
               
664-809
               

               
Cow position:
               
chr25:8347348-8347500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
664-856
               

               
Cow position:
               
chr25:36535591-36535397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
39, 175
               

               
Conread position:
               
664-886
               

               
Cow position:
               
chr25:12081476-12081256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
35, 131
               

               
Conread position:
               
664-887
               

               
Cow position:
               
chr25:38425206-38425428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
14, 125
               

               
Conread position:
               
664-926
               

               
Cow position:
               
chr25:11436961-11436701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
20, 61
               

               
Conread position:
               
664-932
               

               
Cow position:
               
chr25:20076338-20076609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
10, 30
               

               
Conread position:
               
664-951
               

               
Cow position:
               
chr25:28188104-28187816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
12, 183
               

               
Conread position:
               
664-1006
               

               
Cow position:
               
chr25:24669590-24669266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
665-854
               

               
Cow position:
               
chr25:36779342-36779535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
8, 176
               

               
Conread position:
               
665-968
               

               
Cow position:
               
chr25:31230390-31230103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
9, 100
               

               
Conread position:
               
666-1000
               

               
Cow position:
               
chr25:6470373-6470026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
9, 187
               

               
Conread position:
               
669-1006
               

               
Cow position:
               
chr25:7011122-7010784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
35, 100
               

               
Conread position:
               
670-899
               

               
Cow position:
               
chr25:11131433-11131663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
115, 97
               

               
Conread position:
               
670-947
               

               
Cow position:
               
chr25:23917695-23917969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
41, 97
               

               
Conread position:
               
670-951
               

               
Cow position:
               
chr25:22751157-22750875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
83, 119
               

               
Conread position:
               
670-1006
               

               
Cow position:
               
chr25:14791606-14791940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
111, 124
               

               
Conread position:
               
671-817
               

               
Cow position:
               
chr25:35333011-35333156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
38, 117
               

               
Conread position:
               
671-887
               

               
Cow position:
               
chr25:18905738-18905952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
38, 112
               

               
Conread position:
               
671-895
               

               
Cow position:
               
chr25:14196713-14196938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
148, 105
               

               
Conread position:
               
671-898
               

               
Cow position:
               
chr25:6687803-6688023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
671-899
               

               
Cow position:
               
chr25:15377181-15377405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
103, 61
               

               
Conread position:
               
671-899
               

               
Cow position:
               
chr25:21895033-21894806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
131, 115
               

               
Conread position:
               
671-922
               

               
Cow position:
               
chr25:36036927-36036677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
109, 81
               

               
Conread position:
               
671-932
               

               
Cow position:
               
chr25:6961300-6961041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
145, 19
               

               
Conread position:
               
671-936
               

               
Cow position:
               
chr25:8961627-8961885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
111, 79
               

               
Conread position:
               
671-937
               

               
Cow position:
               
chr25:20133459-20133200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
149, 120
               

               
Conread position:
               
671-949
               

               
Cow position:
               
chr25:21245754-21245475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
40, 115
               

               
Conread position:
               
671-951
               

               
Cow position:
               
chr25:6474242-6473958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
111, 37
               

               
Conread position:
               
671-951
               

               
Cow position:
               
chr25:15254478-15254219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
148, 48
               

               
Conread position:
               
671-951
               

               
Cow position:
               
chr25:30618919-30619194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
132, 36
               

               
Conread position:
               
671-980
               

               
Cow position:
               
chr25:788118-788417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
111, 63
               

               
Conread position:
               
671-991
               

               
Cow position:
               
chr25:30279350-30279023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
148, 19
               

               
Conread position:
               
671-997
               

               
Cow position:
               
chr25:6996635-6996962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
33, 126
               

               
Conread position:
               
671-998
               

               
Cow position:
               
chr25:18294464-18294133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
33, 103
               

               
Conread position:
               
671-998
               

               
Cow position:
               
chr25:20348712-20349052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
33, 90
               

               
Conread position:
               
671-1000
               

               
Cow position:
               
chr25:11315763-11316082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
30, 50
               

               
Conread position:
               
671-1001
               

               
Cow position:
               
chr25:2624662-2624975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
284, 79
               

               
Conread position:
               
671-1001
               

               
Cow position:
               
chr25:17190887-17190573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
85, 42
               

               
Conread position:
               
671-1001
               

               
Cow position:
               
chr25:21193087-21192760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
52, 174
               

               
Conread position:
               
671-1001
               

               
Cow position:
               
chr25:26087372-26087699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
35, 99
               

               
Conread position:
               
671-1002
               

               
Cow position:
               
chr25:7007768-7008102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
105, 56
               

               
Conread position:
               
671-1003
               

               
Cow position:
               
chr25:8120633-8120964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 94
               

               
Conread position:
               
671-1003
               

               
Cow position:
               
chr25:19679199-19679535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
108, 47
               

               
Conread position:
               
671-1003
               

               
Cow position:
               
chr25:21191344-21191660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 51
               

               
Conread position:
               
671-1003
               

               
Cow position:
               
chr25:35347761-35348089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 110
               

               
Conread position:
               
671-1004
               

               
Cow position:
               
chr25:17342306-17342645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
33, 152
               

               
Conread position:
               
671-1005
               

               
Cow position:
               
chr25:11661963-11661645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
148, 121
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr25:1838090-1838429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
37, 112
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr25:3992647-3992966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
147, 53
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr25:4521981-4521655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
148, 63
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr25:7216684-7217003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
109, 66
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr25:7673133-7673493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
59, 123
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr25:12609198-12609529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
116, 72
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr25:12755639-12755305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
35, 237
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr25:14512964-14513292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
84, 228
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr25:14720608-14720918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
148, 63
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr25:15273542-15273850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
148, 61
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr25:16319277-16318964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
114, 41
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr25:17704606-17704925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
32, 77
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr25:21668099-21668434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
126, 112
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr25:21893191-21893520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
117, 17
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr25:26089961-26089641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
103, 72
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr25:26523818-26524148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
246, 74
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr25:30319596-30319262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
35, 123
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr25:36746589-36746262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
146, 58
               

               
Conread position:
               
671-1007
               

               
Cow position:
               
chr25:17914633-17914971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
33, 115
               

               
Conread position:
               
671-1007
               

               
Cow position:
               
chr25:20785731-20785400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
105, 21
               

               
Conread position:
               
671-1007
               

               
Cow position:
               
chr25:30852610-30852952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
93, 58
               

               
Conread position:
               
672-885
               

               
Cow position:
               
chr25:32191525-32191725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
147, 66
               

               
Conread position:
               
672-997
               

               
Cow position:
               
chr25:26338304-26338640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
28, 118
               

               
Conread position:
               
672-999
               

               
Cow position:
               
chr25:17566439-17566770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
32, 118
               

               
Conread position:
               
672-1003
               

               
Cow position:
               
chr25:20402862-20402526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
32, 90
               

               
Conread position:
               
672-1006
               

               
Cow position:
               
chr25:5920792-5921132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
32, 130
               

               
Conread position:
               
672-1006
               

               
Cow position:
               
chr25:19129707-19130040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
78, 126
               

               
Conread position:
               
672-1006
               

               
Cow position:
               
chr25:26679082-26679413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 110
               

               
Conread position:
               
672-1006
               

               
Cow position:
               
chr25:38135601-38135939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
103, 166
               

               
Conread position:
               
672-1008
               

               
Cow position:
               
chr25:27532819-27532485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
30, 153
               

               
Conread position:
               
673-1002
               

               
Cow position:
               
chr25:5846948-5846623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
147, 32
               

               
Conread position:
               
674-871
               

               
Cow position:
               
chr25:9957184-9956987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
35, 132
               

               
Conread position:
               
675-815
               

               
Cow position:
               
chr25:12899615-12899754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
675-830
               

               
Cow position:
               
chr25:16001667-16001514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
144, 107
               

               
Conread position:
               
675-834
               

               
Cow position:
               
chr25:20211221-20211065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
144, 31
               

               
Conread position:
               
675-897
               

               
Cow position:
               
chr25:18564346-18564564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
34, 97
               

               
Conread position:
               
675-924
               

               
Cow position:
               
chr25:4547859-4547614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
144, 84
               

               
Conread position:
               
675-926
               

               
Cow position:
               
chr25:17975510-17975270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
144, 69
               

               
Conread position:
               
675-932
               

               
Cow position:
               
chr25:25051524-25051265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
44, 112
               

               
Conread position:
               
675-935
               

               
Cow position:
               
chr25:10218193-10217935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
24, 103
               

               
Conread position:
               
675-937
               

               
Cow position:
               
chr25:4681094-4681343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
675-943
               

               
Cow position:
               
chr25:38981960-38982216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
141, 107
               

               
Conread position:
               
675-949
               

               
Cow position:
               
chr25:5474369-5474103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
24, 94
               

               
Conread position:
               
675-994
               

               
Cow position:
               
chr25:6464177-6463854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
29, 142
               

               
Conread position:
               
675-997
               

               
Cow position:
               
chr25:8485638-8485306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
22, 110
               

               
Conread position:
               
675-998
               

               
Cow position:
               
chr25:26133895-26134224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
25, 102
               

               
Conread position:
               
675-1006
               

               
Cow position:
               
chr25:7750313-7750633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
107, 52
               

               
Conread position:
               
675-1006
               

               
Cow position:
               
chr25:13272430-13272755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
144, 38
               

               
Conread position:
               
675-1006
               

               
Cow position:
               
chr25:24651594-24651271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
26, 112
               

               
Conread position:
               
675-1007
               

               
Cow position:
               
chr25:7641593-7641268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
107, 58
               

               
Conread position:
               
675-1007
               

               
Cow position:
               
chr25:16921933-16921606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
144, 52
               

               
Conread position:
               
675-1008
               

               
Cow position:
               
chr25:20023532-20023206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
107, 128
               

               
Conread position:
               
675-1008
               

               
Cow position:
               
chr25:23245152-23244816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
42, 117
               

               
Conread position:
               
676-879
               

               
Cow position:
               
chr25:7449666-7449859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
143, 39
               

               
Conread position:
               
678-835
               

               
Cow position:
               
chr25:36033298-36033454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
108, 115
               

               
Conread position:
               
678-851
               

               
Cow position:
               
chr25:7801000-7801172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
107, 52
               

               
Conread position:
               
678-942
               

               
Cow position:
               
chr25:27531412-27531151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
123, 55
               

               
Conread position:
               
678-946
               

               
Cow position:
               
chr25:36761966-36762229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
31, 73
               

               
Conread position:
               
678-973
               

               
Cow position:
               
chr25:34979007-34978715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
104, 65
               

               
Conread position:
               
678-998
               

               
Cow position:
               
chr25:33959400-33959072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
26, 103
               

               
Conread position:
               
678-1003
               

               
Cow position:
               
chr25:20523370-20523055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
277, 64
               

               
Conread position:
               
678-1006
               

               
Cow position:
               
chr25:9990232-9989916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
143, 49
               

               
Conread position:
               
678-1006
               

               
Cow position:
               
chr25:10504477-10504149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
105, 73
               

               
Conread position:
               
678-1006
               

               
Cow position:
               
chr25:22315063-22315390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
108, 55
               

               
Conread position:
               
678-1006
               

               
Cow position:
               
chr25:22730693-22731011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
21, 57
               

               
Conread position:
               
678-1007
               

               
Cow position:
               
chr25:11066288-11065952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
26, 107
               

               
Conread position:
               
679-882
               

               
Cow position:
               
chr25:5837101-5836895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
109, 43
               

               
Conread position:
               
679-888
               

               
Cow position:
               
chr25:24051824-24052034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
100, 71
               

               
Conread position:
               
679-899
               

               
Cow position:
               
chr25:13569312-13569098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
27, 111
               

               
Conread position:
               
679-997
               

               
Cow position:
               
chr25:20664436-20664102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
30, 148
               

               
Conread position:
               
679-998
               

               
Cow position:
               
chr25:20007996-20008312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
140, 84
               

               
Conread position:
               
679-1006
               

               
Cow position:
               
chr25:22178782-22179096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 79
               

               
Conread position:
               
680-1006
               

               
Cow position:
               
chr25:10407552-10407225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
21, 63
               

               
Conread position:
               
681-1006
               

               
Cow position:
               
chr25:36020268-36020597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
19, 101
               

               
Conread position:
               
682-1007
               

               
Cow position:
               
chr25:33686815-33686495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
108, 22
               

               
Conread position:
               
683-992
               

               
Cow position:
               
chr25:15634611-15634294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
21, 93
               

               
Conread position:
               
683-1006
               

               
Cow position:
               
chr25:12510144-12509835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
136, 50
               

               
Conread position:
               
683-1006
               

               
Cow position:
               
chr25:22756474-22756798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
17, 109
               

               
Conread position:
               
684-897
               

               
Cow position:
               
chr25:3145710-3145922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
16, 97
               

               
Conread position:
               
684-952
               

               
Cow position:
               
chr25:25861488-25861217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
96, 13
               

               
Conread position:
               
684-1002
               

               
Cow position:
               
chr25:24207552-24207230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
137, 23
               

               
Conread position:
               
685-933
               

               
Cow position:
               
chr25:14157489-14157738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
98, 28
               

               
Conread position:
               
685-979
               

               
Cow position:
               
chr25:24572936-24573221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
134, 75
               

               
Conread position:
               
685-1006
               

               
Cow position:
               
chr25:6683195-6682864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
136, 52
               

               
Conread position:
               
685-1006
               

               
Cow position:
               
chr25:18202059-18201743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
19, 92
               

               
Conread position:
               
685-1006
               

               
Cow position:
               
chr25:26225154-26224850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
143, 22
               

               
Conread position:
               
689-1003
               

               
Cow position:
               
chr25:4245561-4245848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
130, 49
               

               
Conread position:
               
689-1007
               

               
Cow position:
               
chr25:22346644-22346970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 222
               

               
Conread position:
               
692-981
               

               
Cow position:
               
chr25:33457604-33457890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
127, 144
               

               
Conread position:
               
692-1006
               

               
Cow position:
               
chr25:4488794-4489089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
85, 58
               

               
Conread position:
               
693-1001
               

               
Cow position:
               
chr25:9843052-9843362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
126, 5
               

               
Conread position:
               
693-1002
               

               
Cow position:
               
chr25:11051405-11051704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
84, 26
               

               
Conread position:
               
694-951
               

               
Cow position:
               
chr25:22531161-22531410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
125, 51
               

               
Conread position:
               
697-880
               

               
Cow position:
               
chr25:26642462-26642647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
21, 141
               

               
Conread position:
               
697-1008
               

               
Cow position:
               
chr25:33557153-33557454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
122, 110
               

               
Conread position:
               
698-886
               

               
Cow position:
               
chr25:16714387-16714203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
698-899
               

               
Cow position:
               
chr25:19317141-19317344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
83, 106
               

               
Conread position:
               
698-931
               

               
Cow position:
               
chr25:12840842-12840607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
76, 141
               

               
Conread position:
               
698-1003
               

               
Cow position:
               
chr25:19364181-19363877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 97
               

               
Conread position:
               
698-1003
               

               
Cow position:
               
chr25:36872242-36872546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
123, 96
               

               
Conread position:
               
699-1006
               

               
Cow position:
               
chr25:17119626-17119930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
211, 64
               

               
Conread position:
               
699-1007
               

               
Cow position:
               
chr25:11433072-11432765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 145
               

               
Conread position:
               
705-1003
               

               
Cow position:
               
chr25:22317568-22317867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
115, 67
               

               
Conread position:
               
706-1006
               

               
Cow position:
               
chr25:13325467-13325755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
8, 33
               

               
Conread position:
               
708-951
               

               
Cow position:
               
chr25:13566852-13567100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
78, 133
               

               
Conread position:
               
708-1001
               

               
Cow position:
               
chr25:1824205-1823910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
123, 42
               

               
Conread position:
               
709-902
               

               
Cow position:
               
chr25:14117984-14118173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
69, 79
               

               
Conread position:
               
712-1001
               

               
Cow position:
               
chr25:23829234-23828949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
211, 25
               

               
Conread position:
               
713-950
               

               
Cow position:
               
chr25:36555794-36555560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
108, 69
               

               
Conread position:
               
719-981
               

               
Cow position:
               
chr25:8102569-8102834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
78, 56
               

               
Conread position:
               
719-997
               

               
Cow position:
               
chr25:9315922-9316201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
56, 11
               

               
Conread position:
               
719-1002
               

               
Cow position:
               
chr25:6928607-6928334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
265, 74
               

               
Conread position:
               
723-1006
               

               
Cow position:
               
chr25:7816885-7817171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
26, 81
               

               
Conread position:
               
723-1007
               

               
Cow position:
               
chr25:28930777-28930498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
195, 50
               

               
Conread position:
               
724-917
               

               
Cow position:
               
chr25:14809186-14809370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
95, 57
               

               
Conread position:
               
724-931
               

               
Cow position:
               
chr25:4947869-4948073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
95, 43
               

               
Conread position:
               
731-1001
               

               
Cow position:
               
chr25:7799466-7799732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
87, 50
               

               
Conread position:
               
732-947
               

               
Cow position:
               
chr25:23745171-23745385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
49, 60
               

               
Conread position:
               
732-1006
               

               
Cow position:
               
chr25:13621445-13621176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
56, 44
               

               
Conread position:
               
733-987
               

               
Cow position:
               
chr25:15714788-15715039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
86, 31
               

               
Conread position:
               
734-1006
               

               
Cow position:
               
chr25:35052705-35052432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
120, 41
               

               
Conread position:
               
737-951
               

               
Cow position:
               
chr25:40931194-40931402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
53, 31
               

               
Conread position:
               
741-949
               

               
Cow position:
               
chr25:23504970-23505179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
35, 67
               

               
Conread position:
               
742-930
               

               
Cow position:
               
chr25:6134169-6133980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
14, 97
               

               
Conread position:
               
747-1003
               

               
Cow position:
               
chr25:13767898-13768141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
64, 95
               

               
Conread position:
               
755-1006
               

               
Cow position:
               
chr25:1840258-1840507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
27, 51
               

               
Conread position:
               
756-1006
               

               
Cow position:
               
chr25:40682676-40682923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
63, 19
               

               
Conread position:
               
759-1002
               

               
Cow position:
               
chr25:19478614-19478872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
19, 42
               

               
Conread position:
               
765-1006
               

               
Cow position:
               
chr25:26306259-26306017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
54, 76
               

               
Conread position:
               
769-1006
               

               
Cow position:
               
chr25:22298585-22298818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
14, 74
               

               
Conread position:
               
775-1003
               

               
Cow position:
               
chr25:22348507-22348275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
44, 32
               

               
Conread position:
               
776-1001
               

               
Cow position:
               
chr25:35339232-35339009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
43, 17
               

               
Conread position:
               
776-1006
               

               
Cow position:
               
chr25:28597655-28597418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
43, 26
               

               
Conread position:
               
783-1000
               

               
Cow position:
               
chr25:9107559-9107353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
38, 11
               

               
Conread position:
               
794-1007
               

               
Cow position:
               
chr25:18288794-18288583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
25, 44
               

               
Conread position:
               
797-1002
               

               
Cow position:
               
chr25:13222877-13223080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
22, 45
               

               
Conread position:
               
804-1003
               

               
Cow position:
               
chr25:36873349-36873154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
15, 38
               

               
Conread position:
               
804-1006
               

               
Cow position:
               
chr25:3744761-3744548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 40
               

               
Conread position:
               
804-1006
               

               
Cow position:
               
chr25:28668067-28667864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
33, 130
               

               
Conread position:
               
808-1006
               

               
Cow position:
               
chr25:20202901-20203094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
11, 30
               

               
Conread position:
               
819-1007
               

               
Cow position:
               
chr25:1802607-1802798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
16, 113
               

               
Conread position:
               
820-1006
               

               
Cow position:
               
chr25:31657276-31657094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
135, 21
               

               
Conread position:
               
822-1006
               

               
Cow position:
               
chr25:11060135-11060321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
101, 19
               

               
Conread position:
               
841-1007
               

               
Cow position:
               
chr25:31926356-31926197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
843-1006
               

               
Cow position:
               
chr25:14210006-14210162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
844-1006
               

               
Cow position:
               
chr25:4157222-4157061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
111, 85
               

               
Conread position:
               
846-1003
               

               
Cow position:
               
chr25:10856688-10856533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
109, 83
               
Show alignments to all cow chromosomes.