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Cow genome map

           
Conread name:
           
Ss1.1-Lym2-sn70_D11.f.5
        

               
Conread position:
               
648-926
               

               
Cow position:
               
chr29:17154597-17154884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
25, 199
               

               
Conread position:
               
655-898
               

               
Cow position:
               
chr29:41364948-41365187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
9, 18
               

               
Conread position:
               
656-1006
               

               
Cow position:
               
chr29:11915654-11916008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
22, 148
               

               
Conread position:
               
657-1006
               

               
Cow position:
               
chr29:42364175-42363832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
15, 107
               

               
Conread position:
               
658-998
               

               
Cow position:
               
chr29:24045831-24046177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
52, 147
               

               
Conread position:
               
659-902
               

               
Cow position:
               
chr29:11562455-11562695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
22, 93
               

               
Conread position:
               
659-931
               

               
Cow position:
               
chr29:13372507-13372774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
164, 123
               

               
Conread position:
               
659-1007
               

               
Cow position:
               
chr29:31674472-31674819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 18
               

               
Conread position:
               
660-868
               

               
Cow position:
               
chr29:31926446-31926241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
49, 9
               

               
Conread position:
               
660-877
               

               
Cow position:
               
chr29:17301374-17301591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
130, 11
               

               
Conread position:
               
660-950
               

               
Cow position:
               
chr29:11398078-11397797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
156, 14
               

               
Conread position:
               
660-1003
               

               
Cow position:
               
chr29:21706547-21706213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
39, 104
               

               
Conread position:
               
661-897
               

               
Cow position:
               
chr29:17409175-17409413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
42, 117
               

               
Conread position:
               
664-887
               

               
Cow position:
               
chr29:9638470-9638253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
45, 12
               

               
Conread position:
               
664-895
               

               
Cow position:
               
chr29:16309587-16309818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
17, 105
               

               
Conread position:
               
664-909
               

               
Cow position:
               
chr29:10235284-10235045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 51
               

               
Conread position:
               
664-937
               

               
Cow position:
               
chr29:22175533-22175796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
12, 34
               

               
Conread position:
               
664-940
               

               
Cow position:
               
chr29:11054013-11053740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
35, 96
               

               
Conread position:
               
664-941
               

               
Cow position:
               
chr29:11646945-11647215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
117, 10
               

               
Conread position:
               
664-1003
               

               
Cow position:
               
chr29:35677703-35677357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
40, 97
               

               
Conread position:
               
664-1006
               

               
Cow position:
               
chr29:2055902-2056247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
17, 127
               

               
Conread position:
               
664-1006
               

               
Cow position:
               
chr29:40117414-40117752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
29, 140
               

               
Conread position:
               
664-1007
               

               
Cow position:
               
chr29:35458930-35458581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 45
               

               
Conread position:
               
665-1003
               

               
Cow position:
               
chr29:22068905-22068557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
10, 182
               

               
Conread position:
               
667-952
               

               
Cow position:
               
chr29:6844781-6844502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
37, 94
               

               
Conread position:
               
670-854
               

               
Cow position:
               
chr29:31594277-31594093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
108, 118
               

               
Conread position:
               
670-893
               

               
Cow position:
               
chr29:10456706-10456492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
149, 106
               

               
Conread position:
               
670-986
               

               
Cow position:
               
chr29:1556785-1557094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
670-1002
               

               
Cow position:
               
chr29:17109821-17110136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
285, 93
               

               
Conread position:
               
671-824
               

               
Cow position:
               
chr29:3395960-3396112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
111, 120
               

               
Conread position:
               
671-877
               

               
Cow position:
               
chr29:18735786-18735582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
160, 33
               

               
Conread position:
               
671-885
               

               
Cow position:
               
chr29:9718915-9718707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
148, 59
               

               
Conread position:
               
671-885
               

               
Cow position:
               
chr29:24103691-24103476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
108, 92
               

               
Conread position:
               
671-889
               

               
Cow position:
               
chr29:6925866-6926074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
145, 94
               

               
Conread position:
               
671-891
               

               
Cow position:
               
chr29:868627-868846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
35, 107
               

               
Conread position:
               
671-891
               

               
Cow position:
               
chr29:29314801-29314581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
122, 135
               

               
Conread position:
               
671-898
               

               
Cow position:
               
chr29:6293622-6293400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
27, 113
               

               
Conread position:
               
671-898
               

               
Cow position:
               
chr29:22714870-22714645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
147, 118
               

               
Conread position:
               
671-899
               

               
Cow position:
               
chr29:2984738-2984969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
28, 177
               

               
Conread position:
               
671-899
               

               
Cow position:
               
chr29:24252092-24252314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
97, 74
               

               
Conread position:
               
671-918
               

               
Cow position:
               
chr29:23984105-23983857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
38, 174
               

               
Conread position:
               
671-919
               

               
Cow position:
               
chr29:15738487-15738242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
163, 44
               

               
Conread position:
               
671-928
               

               
Cow position:
               
chr29:28446402-28446148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
82, 132
               

               
Conread position:
               
671-931
               

               
Cow position:
               
chr29:17607274-17607527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
146, 57
               

               
Conread position:
               
671-932
               

               
Cow position:
               
chr29:4334581-4334832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
32, 80
               

               
Conread position:
               
671-943
               

               
Cow position:
               
chr29:36216971-36217235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
148, 92
               

               
Conread position:
               
671-947
               

               
Cow position:
               
chr29:87164-86883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
39, 131
               

               
Conread position:
               
671-950
               

               
Cow position:
               
chr29:26654183-26653915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
31, 79
               

               
Conread position:
               
671-951
               

               
Cow position:
               
chr29:23244026-23243749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
170, 0
               

               
Conread position:
               
671-951
               

               
Cow position:
               
chr29:25088607-25088875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
215, 51
               

               
Conread position:
               
671-951
               

               
Cow position:
               
chr29:32211202-32210942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
148, 79
               

               
Conread position:
               
671-951
               

               
Cow position:
               
chr29:45005769-45005498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
108, 17
               

               
Conread position:
               
671-952
               

               
Cow position:
               
chr29:13639516-13639236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
115, 92
               

               
Conread position:
               
671-952
               

               
Cow position:
               
chr29:34745808-34745529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
11, 167
               

               
Conread position:
               
671-979
               

               
Cow position:
               
chr29:24624105-24624407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
109, 22
               

               
Conread position:
               
671-991
               

               
Cow position:
               
chr29:12025617-12025304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
38, 124
               

               
Conread position:
               
671-994
               

               
Cow position:
               
chr29:21933261-21932946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
33, 77
               

               
Conread position:
               
671-998
               

               
Cow position:
               
chr29:4625142-4624818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
33, 51
               

               
Conread position:
               
671-999
               

               
Cow position:
               
chr29:38581829-38582150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
29, 104
               

               
Conread position:
               
671-1002
               

               
Cow position:
               
chr29:5892704-5893029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
148, 17
               

               
Conread position:
               
671-1003
               

               
Cow position:
               
chr29:2744418-2744085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
115, 141
               

               
Conread position:
               
671-1003
               

               
Cow position:
               
chr29:4480318-4479983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 112
               

               
Conread position:
               
671-1003
               

               
Cow position:
               
chr29:4875039-4874706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
67, 230
               

               
Conread position:
               
671-1003
               

               
Cow position:
               
chr29:10838804-10839123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
148, 105
               

               
Conread position:
               
671-1003
               

               
Cow position:
               
chr29:12784103-12783771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
38, 112
               

               
Conread position:
               
671-1003
               

               
Cow position:
               
chr29:29769497-29769170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
148, 110
               

               
Conread position:
               
671-1003
               

               
Cow position:
               
chr29:35501797-35501481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
148, 78
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr29:4120697-4121043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
31, 151
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr29:5409293-5408955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
28, 101
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr29:6337514-6337838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
29, 166
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr29:17462932-17462592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
17, 75
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr29:19762130-19762450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
148, 78
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr29:23844689-23845027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
95, 128
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr29:24952542-24952874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
282, 116
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr29:25091966-25092291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 91
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr29:28195660-28195346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
26, 115
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr29:31928835-31929173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
82, 129
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr29:34773880-34773562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 113
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr29:35084369-35084036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
38, 101
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr29:35291944-35292273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
111, 61
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr29:36210016-36210337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
255, 38
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr29:37618160-37618495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
104, 77
               

               
Conread position:
               
671-1007
               

               
Cow position:
               
chr29:25737564-25737231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 167
               

               
Conread position:
               
671-1007
               

               
Cow position:
               
chr29:39111461-39111136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 172
               

               
Conread position:
               
671-1008
               

               
Cow position:
               
chr29:9709550-9709882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
102, 42
               

               
Conread position:
               
671-1008
               

               
Cow position:
               
chr29:16609595-16609939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 170
               

               
Conread position:
               
672-864
               

               
Cow position:
               
chr29:42849078-42849269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
128, 102
               

               
Conread position:
               
672-895
               

               
Cow position:
               
chr29:10018429-10018654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
32, 61
               

               
Conread position:
               
672-898
               

               
Cow position:
               
chr29:15940778-15940552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
119, 36
               

               
Conread position:
               
672-922
               

               
Cow position:
               
chr29:19821142-19821385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
147, 116
               

               
Conread position:
               
672-938
               

               
Cow position:
               
chr29:20903429-20903174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
110, 35
               

               
Conread position:
               
672-951
               

               
Cow position:
               
chr29:40959993-40959719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
34, 86
               

               
Conread position:
               
672-996
               

               
Cow position:
               
chr29:29057036-29057353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
32, 65
               

               
Conread position:
               
672-1002
               

               
Cow position:
               
chr29:43328495-43328815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
105, 146
               

               
Conread position:
               
672-1003
               

               
Cow position:
               
chr29:36530722-36531050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 78
               

               
Conread position:
               
672-1006
               

               
Cow position:
               
chr29:14501449-14501782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
28, 58
               

               
Conread position:
               
672-1006
               

               
Cow position:
               
chr29:17296986-17297325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
34, 105
               

               
Conread position:
               
673-943
               

               
Cow position:
               
chr29:28166357-28166101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
146, 70
               

               
Conread position:
               
673-946
               

               
Cow position:
               
chr29:26615866-26615590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
137, 110
               

               
Conread position:
               
673-979
               

               
Cow position:
               
chr29:19428514-19428816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
42, 110
               

               
Conread position:
               
674-1003
               

               
Cow position:
               
chr29:22613283-22613605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 164
               

               
Conread position:
               
675-831
               

               
Cow position:
               
chr29:45383983-45384139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
144, 122
               

               
Conread position:
               
675-891
               

               
Cow position:
               
chr29:22778320-22778105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
34, 119
               

               
Conread position:
               
675-925
               

               
Cow position:
               
chr29:43009224-43008979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
104, 119
               

               
Conread position:
               
675-951
               

               
Cow position:
               
chr29:38580837-38581111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
144, 14
               

               
Conread position:
               
675-955
               

               
Cow position:
               
chr29:6286301-6286030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
28, 108
               

               
Conread position:
               
675-1003
               

               
Cow position:
               
chr29:4520193-4520516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
111, 164
               

               
Conread position:
               
675-1006
               

               
Cow position:
               
chr29:12680016-12680345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
109, 118
               

               
Conread position:
               
675-1006
               

               
Cow position:
               
chr29:31489179-31489511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
105, 119
               

               
Conread position:
               
675-1007
               

               
Cow position:
               
chr29:22162395-22162076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 163
               

               
Conread position:
               
678-891
               

               
Cow position:
               
chr29:40166107-40166315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
107, 71
               

               
Conread position:
               
678-902
               

               
Cow position:
               
chr29:44682236-44682022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
110, 45
               

               
Conread position:
               
678-907
               

               
Cow position:
               
chr29:27329753-27329980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
140, 115
               

               
Conread position:
               
678-931
               

               
Cow position:
               
chr29:39567548-39567792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
96, 111
               

               
Conread position:
               
678-932
               

               
Cow position:
               
chr29:9912033-9912287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
108, 167
               

               
Conread position:
               
678-979
               

               
Cow position:
               
chr29:29974905-29975199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
141, 35
               

               
Conread position:
               
678-994
               

               
Cow position:
               
chr29:465536-465223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
26, 44
               

               
Conread position:
               
678-994
               

               
Cow position:
               
chr29:20910836-20910515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
22, 129
               

               
Conread position:
               
678-1006
               

               
Cow position:
               
chr29:16657549-16657878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
21, 172
               

               
Conread position:
               
678-1006
               

               
Cow position:
               
chr29:18462694-18462367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
100, 65
               

               
Conread position:
               
678-1006
               

               
Cow position:
               
chr29:28197145-28196833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
11, 31
               

               
Conread position:
               
679-894
               

               
Cow position:
               
chr29:463792-463578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
27, 54
               

               
Conread position:
               
679-922
               

               
Cow position:
               
chr29:27826388-27826622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
138, 61
               

               
Conread position:
               
679-938
               

               
Cow position:
               
chr29:41811720-41811472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
139, 34
               

               
Conread position:
               
679-943
               

               
Cow position:
               
chr29:27588785-27589044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
679-994
               

               
Cow position:
               
chr29:29942871-29942551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
20, 161
               

               
Conread position:
               
679-1006
               

               
Cow position:
               
chr29:32799850-32799516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
20, 133
               

               
Conread position:
               
680-938
               

               
Cow position:
               
chr29:4002759-4003008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
101, 51
               

               
Conread position:
               
680-1001
               

               
Cow position:
               
chr29:31943743-31944050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
139, 57
               

               
Conread position:
               
680-1006
               

               
Cow position:
               
chr29:10058673-10058356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
102, 69
               

               
Conread position:
               
680-1006
               

               
Cow position:
               
chr29:14838944-14838620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 33
               

               
Conread position:
               
680-1006
               

               
Cow position:
               
chr29:28739486-28739814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
34, 80
               

               
Conread position:
               
682-979
               

               
Cow position:
               
chr29:21443479-21443176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
22, 122
               

               
Conread position:
               
682-979
               

               
Cow position:
               
chr29:29795523-29795220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
21, 158
               

               
Conread position:
               
683-1006
               

               
Cow position:
               
chr29:41530716-41531038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
136, 13
               

               
Conread position:
               
684-1006
               

               
Cow position:
               
chr29:11666828-11667135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
16, 76
               

               
Conread position:
               
684-1006
               

               
Cow position:
               
chr29:26259343-26259663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
16, 98
               

               
Conread position:
               
689-931
               

               
Cow position:
               
chr29:29176743-29176506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
129, 104
               

               
Conread position:
               
689-1000
               

               
Cow position:
               
chr29:34359108-34358797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
99, 57
               

               
Conread position:
               
691-1001
               

               
Cow position:
               
chr29:27846343-27846666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
130, 58
               

               
Conread position:
               
697-1003
               

               
Cow position:
               
chr29:26017623-26017316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
13, 67
               

               
Conread position:
               
697-1006
               

               
Cow position:
               
chr29:30227393-30227093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
122, 79
               

               
Conread position:
               
697-1006
               

               
Cow position:
               
chr29:30440811-30441126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
84, 98
               

               
Conread position:
               
698-883
               

               
Cow position:
               
chr29:21941480-21941664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
142, 76
               

               
Conread position:
               
698-951
               

               
Cow position:
               
chr29:13028319-13028571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
109, 21
               

               
Conread position:
               
698-977
               

               
Cow position:
               
chr29:28775576-28775305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
143, 60
               

               
Conread position:
               
698-1003
               

               
Cow position:
               
chr29:25474801-25475117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
136, 116
               

               
Conread position:
               
698-1006
               

               
Cow position:
               
chr29:23874343-23874649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
88, 21
               

               
Conread position:
               
699-1006
               

               
Cow position:
               
chr29:28814097-28813785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
124, 82
               

               
Conread position:
               
700-1006
               

               
Cow position:
               
chr29:5063031-5063330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
119, 19
               

               
Conread position:
               
706-1006
               

               
Cow position:
               
chr29:5046541-5046840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
117, 87
               

               
Conread position:
               
707-1003
               

               
Cow position:
               
chr29:21508460-21508163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
70, 94
               

               
Conread position:
               
707-1008
               

               
Cow position:
               
chr29:1614815-1615116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
83, 136
               

               
Conread position:
               
708-1000
               

               
Cow position:
               
chr29:1007707-1007999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
73, 118
               

               
Conread position:
               
710-932
               

               
Cow position:
               
chr29:6015015-6015238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
72, 84
               

               
Conread position:
               
710-937
               

               
Cow position:
               
chr29:12626086-12625859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
103, 124
               

               
Conread position:
               
710-941
               

               
Cow position:
               
chr29:8862585-8862360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
103, 82
               

               
Conread position:
               
710-979
               

               
Cow position:
               
chr29:28674814-28674543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
52, 48
               

               
Conread position:
               
710-997
               

               
Cow position:
               
chr29:17168298-17168583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
79, 64
               

               
Conread position:
               
710-1006
               

               
Cow position:
               
chr29:26477432-26477732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
116, 104
               

               
Conread position:
               
713-951
               

               
Cow position:
               
chr29:8926567-8926334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
75, 36
               

               
Conread position:
               
714-922
               

               
Cow position:
               
chr29:24578755-24578965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
41, 130
               

               
Conread position:
               
714-1006
               

               
Cow position:
               
chr29:26778777-26779063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
66, 31
               

               
Conread position:
               
723-1006
               

               
Cow position:
               
chr29:4492346-4492619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
63, 75
               

               
Conread position:
               
726-1003
               

               
Cow position:
               
chr29:21665996-21666270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
94, 53
               

               
Conread position:
               
726-1006
               

               
Cow position:
               
chr29:15947080-15947356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
95, 24
               

               
Conread position:
               
726-1006
               

               
Cow position:
               
chr29:20924812-20925095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 58
               

               
Conread position:
               
729-952
               

               
Cow position:
               
chr29:18085482-18085704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
90, 8
               

               
Conread position:
               
731-1003
               

               
Cow position:
               
chr29:19949215-19949489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
37, 119
               

               
Conread position:
               
732-1006
               

               
Cow position:
               
chr29:20770258-20770531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
57, 107
               

               
Conread position:
               
737-922
               

               
Cow position:
               
chr29:18012474-18012660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
45, 100
               

               
Conread position:
               
738-1000
               

               
Cow position:
               
chr29:36248956-36249219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
88, 9
               

               
Conread position:
               
738-1003
               

               
Cow position:
               
chr29:30548694-30548957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
81, 104
               

               
Conread position:
               
741-954
               

               
Cow position:
               
chr29:28840077-28840288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
79, 97
               

               
Conread position:
               
742-931
               

               
Cow position:
               
chr29:23220577-23220390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
77, 95
               

               
Conread position:
               
744-1003
               

               
Cow position:
               
chr29:29324487-29324236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
75, 31
               

               
Conread position:
               
749-944
               

               
Cow position:
               
chr29:38978461-38978655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
71, 89
               

               
Conread position:
               
755-1003
               

               
Cow position:
               
chr29:44139308-44139061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
64, 83
               

               
Conread position:
               
755-1006
               

               
Cow position:
               
chr29:38980133-38979893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
64, 32
               

               
Conread position:
               
756-1006
               

               
Cow position:
               
chr29:41112936-41112703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
63, 27
               

               
Conread position:
               
760-1006
               

               
Cow position:
               
chr29:30681769-30681516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
61, 42
               

               
Conread position:
               
764-1006
               

               
Cow position:
               
chr29:23155174-23155422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
55, 33
               

               
Conread position:
               
772-1000
               

               
Cow position:
               
chr29:23825260-23825031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
17, 73
               

               
Conread position:
               
772-1003
               

               
Cow position:
               
chr29:44991471-44991241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
47, 69
               

               
Conread position:
               
786-927
               

               
Cow position:
               
chr29:742685-742542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
13, 54
               

               
Conread position:
               
786-1003
               

               
Cow position:
               
chr29:32197663-32197878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
33, 51
               

               
Conread position:
               
794-1006
               

               
Cow position:
               
chr29:17804510-17804717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
19, 8
               

               
Conread position:
               
794-1007
               

               
Cow position:
               
chr29:26540566-26540352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
25, 48
               

               
Conread position:
               
796-1003
               

               
Cow position:
               
chr29:39038292-39038085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
23, 6
               

               
Conread position:
               
797-1000
               

               
Cow position:
               
chr29:22723578-22723777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
22, 45
               

               
Conread position:
               
805-1006
               

               
Cow position:
               
chr29:9378622-9378822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 37
               

               
Conread position:
               
806-1003
               

               
Cow position:
               
chr29:7290762-7290953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
13, 36
               

               
Conread position:
               
807-1008
               

               
Cow position:
               
chr29:36781317-36781121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
13, 35
               

               
Conread position:
               
809-1003
               

               
Cow position:
               
chr29:19363700-19363892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
11, 33
               

               
Conread position:
               
841-1006
               

               
Cow position:
               
chr29:17282089-17282248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
57, 0
               
Show alignments to all cow chromosomes.