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Cow genome map

           
Conread name:
           
Ss1.1-Lym2-sn70_D11.f.5
        

               
Conread position:
               
494-952
               

               
Cow position:
               
chr6:15242962-15243427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
89, 15
               

               
Conread position:
               
610-832
               

               
Cow position:
               
chr6:49685419-49685640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
210, 81
               

               
Conread position:
               
623-936
               

               
Cow position:
               
chr6:42565532-42565844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
58, 35
               

               
Conread position:
               
650-1007
               

               
Cow position:
               
chr6:53460700-53460342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 192
               

               
Conread position:
               
654-1006
               

               
Cow position:
               
chr6:11246641-11246996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
132, 161
               

               
Conread position:
               
655-1006
               

               
Cow position:
               
chr6:120122-120465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
82, 49
               

               
Conread position:
               
656-884
               

               
Cow position:
               
chr6:1371352-1371120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
25, 124
               

               
Conread position:
               
656-898
               

               
Cow position:
               
chr6:8788158-8787917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
52, 109
               

               
Conread position:
               
656-1003
               

               
Cow position:
               
chr6:35435879-35436212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
53, 27
               

               
Conread position:
               
657-998
               

               
Cow position:
               
chr6:17704703-17705054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
47, 7
               

               
Conread position:
               
658-779
               

               
Cow position:
               
chr6:2012902-2013022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
658-891
               

               
Cow position:
               
chr6:56843038-56843267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
120, 46
               

               
Conread position:
               
658-899
               

               
Cow position:
               
chr6:49002852-49002619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
46, 131
               

               
Conread position:
               
658-931
               

               
Cow position:
               
chr6:63047454-63047745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 202
               

               
Conread position:
               
658-1001
               

               
Cow position:
               
chr6:46465705-46466041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 137
               

               
Conread position:
               
658-1003
               

               
Cow position:
               
chr6:10176422-10176074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
17, 132
               

               
Conread position:
               
658-1006
               

               
Cow position:
               
chr6:25615223-25614862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 182
               

               
Conread position:
               
658-1006
               

               
Cow position:
               
chr6:29210381-29210705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
186, 24
               

               
Conread position:
               
658-1007
               

               
Cow position:
               
chr6:21231413-21231741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
161, 65
               

               
Conread position:
               
659-891
               

               
Cow position:
               
chr6:61608393-61608625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 123
               

               
Conread position:
               
659-899
               

               
Cow position:
               
chr6:66874234-66874472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
122, 31
               

               
Conread position:
               
659-932
               

               
Cow position:
               
chr6:31564455-31564184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
45, 52
               

               
Conread position:
               
659-933
               

               
Cow position:
               
chr6:54573126-54573414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
50, 193
               

               
Conread position:
               
659-937
               

               
Cow position:
               
chr6:21234927-21235200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
88, 104
               

               
Conread position:
               
659-951
               

               
Cow position:
               
chr6:4692097-4691805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
50, 181
               

               
Conread position:
               
659-1003
               

               
Cow position:
               
chr6:19292682-19293023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
40, 19
               

               
Conread position:
               
659-1003
               

               
Cow position:
               
chr6:47355707-47356051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
13, 8
               

               
Conread position:
               
659-1006
               

               
Cow position:
               
chr6:19755190-19754850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
9, 20
               

               
Conread position:
               
660-918
               

               
Cow position:
               
chr6:38614700-38614952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
18, 49
               

               
Conread position:
               
660-995
               

               
Cow position:
               
chr6:21737002-21736685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
133, 49
               

               
Conread position:
               
660-1004
               

               
Cow position:
               
chr6:13687933-13687590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 101
               

               
Conread position:
               
660-1006
               

               
Cow position:
               
chr6:56849896-56850245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
114, 168
               

               
Conread position:
               
661-917
               

               
Cow position:
               
chr6:59718681-59718935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
113, 137
               

               
Conread position:
               
661-922
               

               
Cow position:
               
chr6:31525932-31526190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
110, 26
               

               
Conread position:
               
661-951
               

               
Cow position:
               
chr6:66531936-66531651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
158, 97
               

               
Conread position:
               
661-1002
               

               
Cow position:
               
chr6:32121791-32122119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
14, 93
               

               
Conread position:
               
662-1006
               

               
Cow position:
               
chr6:3595674-3596022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
42, 100
               

               
Conread position:
               
664-817
               

               
Cow position:
               
chr6:20230943-20230787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
42, 134
               

               
Conread position:
               
664-875
               

               
Cow position:
               
chr6:62925110-62924899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
12, 108
               

               
Conread position:
               
664-884
               

               
Cow position:
               
chr6:60667304-60667519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
10, 122
               

               
Conread position:
               
664-888
               

               
Cow position:
               
chr6:20206159-20206385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
13, 116
               

               
Conread position:
               
664-898
               

               
Cow position:
               
chr6:16316193-16316437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 179
               

               
Conread position:
               
664-926
               

               
Cow position:
               
chr6:37634672-37634943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
118, 145
               

               
Conread position:
               
664-931
               

               
Cow position:
               
chr6:4864660-4864394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
155, 133
               

               
Conread position:
               
664-933
               

               
Cow position:
               
chr6:48112085-48112351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
12, 50
               

               
Conread position:
               
664-944
               

               
Cow position:
               
chr6:26728637-26728368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
25, 30
               

               
Conread position:
               
664-949
               

               
Cow position:
               
chr6:1499525-1499817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
12, 142
               

               
Conread position:
               
664-951
               

               
Cow position:
               
chr6:9736755-9736486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
40, 15
               

               
Conread position:
               
664-951
               

               
Cow position:
               
chr6:54867399-54867688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
12, 182
               

               
Conread position:
               
664-968
               

               
Cow position:
               
chr6:16423586-16423898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
16, 85
               

               
Conread position:
               
664-981
               

               
Cow position:
               
chr6:61269196-61269514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 132
               

               
Conread position:
               
664-990
               

               
Cow position:
               
chr6:59798545-59798866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
36, 95
               

               
Conread position:
               
664-1001
               

               
Cow position:
               
chr6:33206635-33206952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
89, 40
               

               
Conread position:
               
664-1002
               

               
Cow position:
               
chr6:38441065-38441404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
40, 22
               

               
Conread position:
               
664-1006
               

               
Cow position:
               
chr6:5330307-5330642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
155, 41
               

               
Conread position:
               
664-1006
               

               
Cow position:
               
chr6:15937965-15937624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
17, 97
               

               
Conread position:
               
664-1006
               

               
Cow position:
               
chr6:21456803-21456449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
15, 126
               

               
Conread position:
               
664-1006
               

               
Cow position:
               
chr6:34475667-34475330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
8, 103
               

               
Conread position:
               
664-1006
               

               
Cow position:
               
chr6:37149076-37149410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
664-1006
               

               
Cow position:
               
chr6:54365445-54365101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
15, 176
               

               
Conread position:
               
664-1006
               

               
Cow position:
               
chr6:65264653-65264323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
17, 126
               

               
Conread position:
               
664-1007
               

               
Cow position:
               
chr6:19996504-19996844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
12, 79
               

               
Conread position:
               
664-1007
               

               
Cow position:
               
chr6:35181370-35181025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
37, 60
               

               
Conread position:
               
664-1008
               

               
Cow position:
               
chr6:62669757-62670101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
12, 42
               

               
Conread position:
               
665-884
               

               
Cow position:
               
chr6:16266607-16266830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
7, 113
               

               
Conread position:
               
665-896
               

               
Cow position:
               
chr6:28318291-28318515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
16, 128
               

               
Conread position:
               
665-923
               

               
Cow position:
               
chr6:36470681-36470417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
16, 178
               

               
Conread position:
               
665-991
               

               
Cow position:
               
chr6:50984114-50984438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
34, 88
               

               
Conread position:
               
665-1003
               

               
Cow position:
               
chr6:16261672-16262006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
39, 88
               

               
Conread position:
               
665-1007
               

               
Cow position:
               
chr6:6063401-6063063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
36, 11
               

               
Conread position:
               
665-1007
               

               
Cow position:
               
chr6:6965503-6965166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
21, 71
               

               
Conread position:
               
667-1006
               

               
Cow position:
               
chr6:38771177-38771499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
152, 115
               

               
Conread position:
               
669-888
               

               
Cow position:
               
chr6:40713608-40713393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
31, 118
               

               
Conread position:
               
669-923
               

               
Cow position:
               
chr6:37462915-37463167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
119, 71
               

               
Conread position:
               
670-952
               

               
Cow position:
               
chr6:46283106-46282829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
114, 63
               

               
Conread position:
               
670-952
               

               
Cow position:
               
chr6:61168669-61168929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
149, 57
               

               
Conread position:
               
670-1006
               

               
Cow position:
               
chr6:53024901-53024583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
116, 57
               

               
Conread position:
               
671-780
               

               
Cow position:
               
chr6:45160399-45160290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
671-786
               

               
Cow position:
               
chr6:48344227-48344342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
671-818
               

               
Cow position:
               
chr6:54287967-54288112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
32, 113
               

               
Conread position:
               
671-834
               

               
Cow position:
               
chr6:19351259-19351101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
671-834
               

               
Cow position:
               
chr6:34031558-34031718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
145, 74
               

               
Conread position:
               
671-834
               

               
Cow position:
               
chr6:53731416-53731581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
33, 112
               

               
Conread position:
               
671-854
               

               
Cow position:
               
chr6:37376622-37376438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
113, 166
               

               
Conread position:
               
671-870
               

               
Cow position:
               
chr6:24962044-24962237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
148, 51
               

               
Conread position:
               
671-886
               

               
Cow position:
               
chr6:17090494-17090707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
168, 0
               

               
Conread position:
               
671-888
               

               
Cow position:
               
chr6:25008609-25008829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
109, 17
               

               
Conread position:
               
671-893
               

               
Cow position:
               
chr6:12543038-12542815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
117, 167
               

               
Conread position:
               
671-893
               

               
Cow position:
               
chr6:63272715-63272497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
28, 64
               

               
Conread position:
               
671-899
               

               
Cow position:
               
chr6:57164321-57164550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 167
               

               
Conread position:
               
671-899
               

               
Cow position:
               
chr6:66131198-66131427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
28, 126
               

               
Conread position:
               
671-902
               

               
Cow position:
               
chr6:899395-899169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
142, 115
               

               
Conread position:
               
671-904
               

               
Cow position:
               
chr6:31635794-31635558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
117, 37
               

               
Conread position:
               
671-909
               

               
Cow position:
               
chr6:23248064-23247836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
111, 56
               

               
Conread position:
               
671-922
               

               
Cow position:
               
chr6:14958450-14958196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
124, 167
               

               
Conread position:
               
671-923
               

               
Cow position:
               
chr6:60350400-60350147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
91, 129
               

               
Conread position:
               
671-926
               

               
Cow position:
               
chr6:47640538-47640285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
148, 121
               

               
Conread position:
               
671-932
               

               
Cow position:
               
chr6:9008716-9008458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
145, 111
               

               
Conread position:
               
671-935
               

               
Cow position:
               
chr6:12551165-12551427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
148, 55
               

               
Conread position:
               
671-938
               

               
Cow position:
               
chr6:53651938-53652198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
150, 59
               

               
Conread position:
               
671-968
               

               
Cow position:
               
chr6:4559410-4559124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 101
               

               
Conread position:
               
671-968
               

               
Cow position:
               
chr6:40032088-40032377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
148, 86
               

               
Conread position:
               
671-979
               

               
Cow position:
               
chr6:57571372-57571679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
56, 121
               

               
Conread position:
               
671-982
               

               
Cow position:
               
chr6:35471624-35471309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
124, 174
               

               
Conread position:
               
671-985
               

               
Cow position:
               
chr6:8637170-8637484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
107, 139
               

               
Conread position:
               
671-987
               

               
Cow position:
               
chr6:21514724-21514398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
28, 112
               

               
Conread position:
               
671-993
               

               
Cow position:
               
chr6:55282391-55282075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
148, 14
               

               
Conread position:
               
671-995
               

               
Cow position:
               
chr6:445210-445545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
39, 172
               

               
Conread position:
               
671-997
               

               
Cow position:
               
chr6:35842545-35842879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
28, 150
               

               
Conread position:
               
671-997
               

               
Cow position:
               
chr6:52412753-52413081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
28, 106
               

               
Conread position:
               
671-997
               

               
Cow position:
               
chr6:55209451-55209779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
33, 104
               

               
Conread position:
               
671-998
               

               
Cow position:
               
chr6:58732414-58732080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
33, 135
               

               
Conread position:
               
671-1001
               

               
Cow position:
               
chr6:17313629-17313961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
104, 87
               

               
Conread position:
               
671-1001
               

               
Cow position:
               
chr6:45388225-45388544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
104, 124
               

               
Conread position:
               
671-1001
               

               
Cow position:
               
chr6:65870923-65871254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
41, 173
               

               
Conread position:
               
671-1002
               

               
Cow position:
               
chr6:15305476-15305795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 78
               

               
Conread position:
               
671-1003
               

               
Cow position:
               
chr6:2547141-2547486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 69
               

               
Conread position:
               
671-1003
               

               
Cow position:
               
chr6:5114150-5113822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
148, 79
               

               
Conread position:
               
671-1003
               

               
Cow position:
               
chr6:8965988-8966313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
111, 36
               

               
Conread position:
               
671-1003
               

               
Cow position:
               
chr6:9219168-9219488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
32, 40
               

               
Conread position:
               
671-1003
               

               
Cow position:
               
chr6:31535672-31535348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
148, 53
               

               
Conread position:
               
671-1003
               

               
Cow position:
               
chr6:36202723-36203046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
113, 56
               

               
Conread position:
               
671-1003
               

               
Cow position:
               
chr6:46860269-46859945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
148, 55
               

               
Conread position:
               
671-1003
               

               
Cow position:
               
chr6:50090540-50090870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
43, 79
               

               
Conread position:
               
671-1003
               

               
Cow position:
               
chr6:60819410-60819740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
35, 116
               

               
Conread position:
               
671-1003
               

               
Cow position:
               
chr6:61515301-61514973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
15, 172
               

               
Conread position:
               
671-1004
               

               
Cow position:
               
chr6:47305234-47305568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
33, 78
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr6:1770300-1769966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
31, 48
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr6:5609545-5609214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
148, 56
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr6:6264538-6264880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
104, 69
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr6:10106097-10105755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 139
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr6:10225744-10225422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
254, 92
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr6:16746235-16746574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
33, 104
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr6:17997420-17997089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
30, 80
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr6:18447613-18447287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
66, 36
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr6:21061997-21061663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
34, 176
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr6:23402094-23401767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
150, 37
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr6:24468498-24468171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
40, 124
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr6:24781664-24781323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
37, 116
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr6:29484985-29485311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 65
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr6:34196255-34195934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
148, 116
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr6:38207596-38207258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
103, 94
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr6:39358448-39358115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
56, 33
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr6:47574800-47575119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
50, 124
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr6:49398719-49398401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr6:60739910-60740238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
30, 116
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr6:61631714-61631380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
33, 123
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr6:67950848-67951185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
115, 62
               

               
Conread position:
               
671-1007
               

               
Cow position:
               
chr6:11192571-11192251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
114, 36
               

               
Conread position:
               
671-1007
               

               
Cow position:
               
chr6:14949584-14949262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
32, 73
               

               
Conread position:
               
671-1007
               

               
Cow position:
               
chr6:38609863-38610203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
36, 104
               

               
Conread position:
               
671-1007
               

               
Cow position:
               
chr6:38853759-38853427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
69, 50
               

               
Conread position:
               
671-1007
               

               
Cow position:
               
chr6:50577419-50577744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 105
               

               
Conread position:
               
671-1007
               

               
Cow position:
               
chr6:59603312-59602986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
120, 41
               

               
Conread position:
               
671-1007
               

               
Cow position:
               
chr6:64431834-64432162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
148, 35
               

               
Conread position:
               
672-890
               

               
Cow position:
               
chr6:58073944-58074160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
118, 86
               

               
Conread position:
               
672-902
               

               
Cow position:
               
chr6:130265-130039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
147, 71
               

               
Conread position:
               
672-932
               

               
Cow position:
               
chr6:36652315-36652575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
123, 173
               

               
Conread position:
               
672-935
               

               
Cow position:
               
chr6:58597608-58597350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
116, 71
               

               
Conread position:
               
672-938
               

               
Cow position:
               
chr6:24004439-24004696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
149, 78
               

               
Conread position:
               
672-944
               

               
Cow position:
               
chr6:59069728-59069456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
147, 78
               

               
Conread position:
               
672-972
               

               
Cow position:
               
chr6:48187686-48187383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
27, 104
               

               
Conread position:
               
672-979
               

               
Cow position:
               
chr6:60859406-60859097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
32, 104
               

               
Conread position:
               
672-987
               

               
Cow position:
               
chr6:8562616-8562927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
148, 165
               

               
Conread position:
               
672-992
               

               
Cow position:
               
chr6:17414552-17414233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 61
               

               
Conread position:
               
672-994
               

               
Cow position:
               
chr6:8125224-8125545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
149, 32
               

               
Conread position:
               
672-994
               

               
Cow position:
               
chr6:38640127-38640450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
147, 155
               

               
Conread position:
               
672-997
               

               
Cow position:
               
chr6:54036239-54035921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
246, 47
               

               
Conread position:
               
672-1001
               

               
Cow position:
               
chr6:50746880-50747223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
32, 153
               

               
Conread position:
               
672-1003
               

               
Cow position:
               
chr6:43345550-43345215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
30, 113
               

               
Conread position:
               
672-1003
               

               
Cow position:
               
chr6:54132713-54133036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
127, 54
               

               
Conread position:
               
672-1006
               

               
Cow position:
               
chr6:4383382-4383702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
672-1006
               

               
Cow position:
               
chr6:20157225-20157563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
24, 124
               

               
Conread position:
               
672-1006
               

               
Cow position:
               
chr6:23695890-23696222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
120, 169
               

               
Conread position:
               
672-1006
               

               
Cow position:
               
chr6:29239835-29240160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
34, 128
               

               
Conread position:
               
672-1006
               

               
Cow position:
               
chr6:50467031-50467366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
30, 94
               

               
Conread position:
               
672-1006
               

               
Cow position:
               
chr6:61113650-61113993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
32, 154
               

               
Conread position:
               
672-1008
               

               
Cow position:
               
chr6:21399857-21399524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
32, 85
               

               
Conread position:
               
672-1008
               

               
Cow position:
               
chr6:51835293-51835628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
27, 117
               

               
Conread position:
               
673-855
               

               
Cow position:
               
chr6:44127503-44127688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
29, 125
               

               
Conread position:
               
675-780
               

               
Cow position:
               
chr6:15923100-15922995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
675-834
               

               
Cow position:
               
chr6:38233857-38234016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
144, 119
               

               
Conread position:
               
675-835
               

               
Cow position:
               
chr6:6460442-6460600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
138, 109
               

               
Conread position:
               
675-855
               

               
Cow position:
               
chr6:21542219-21542400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
123, 163
               

               
Conread position:
               
675-865
               

               
Cow position:
               
chr6:18961617-18961430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
144, 112
               

               
Conread position:
               
675-893
               

               
Cow position:
               
chr6:3081231-3081001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 65
               

               
Conread position:
               
675-930
               

               
Cow position:
               
chr6:9452870-9452617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
115, 72
               

               
Conread position:
               
675-931
               

               
Cow position:
               
chr6:21869749-21869496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
149, 61
               

               
Conread position:
               
675-933
               

               
Cow position:
               
chr6:1886765-1886512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
29, 56
               

               
Conread position:
               
675-933
               

               
Cow position:
               
chr6:38218571-38218820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
233, 17
               

               
Conread position:
               
675-936
               

               
Cow position:
               
chr6:28977136-28976881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
115, 44
               

               
Conread position:
               
675-949
               

               
Cow position:
               
chr6:47799190-47799464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
28, 102
               

               
Conread position:
               
675-949
               

               
Cow position:
               
chr6:54991101-54990832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
130, 11
               

               
Conread position:
               
675-951
               

               
Cow position:
               
chr6:8209692-8209433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
675-951
               

               
Cow position:
               
chr6:35993480-35993756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
38, 80
               

               
Conread position:
               
675-951
               

               
Cow position:
               
chr6:67214643-67214923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
34, 93
               

               
Conread position:
               
675-998
               

               
Cow position:
               
chr6:48281895-48282215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
29, 69
               

               
Conread position:
               
675-1001
               

               
Cow position:
               
chr6:1429538-1429857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
65, 33
               

               
Conread position:
               
675-1001
               

               
Cow position:
               
chr6:32287537-32287854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
135, 118
               

               
Conread position:
               
675-1001
               

               
Cow position:
               
chr6:36196113-36196425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
142, 63
               

               
Conread position:
               
675-1003
               

               
Cow position:
               
chr6:31814838-31814521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
29, 47
               

               
Conread position:
               
675-1003
               

               
Cow position:
               
chr6:45690690-45690393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
144, 62
               

               
Conread position:
               
675-1003
               

               
Cow position:
               
chr6:51581354-51581030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 75
               

               
Conread position:
               
675-1006
               

               
Cow position:
               
chr6:5095655-5095314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
25, 127
               

               
Conread position:
               
675-1006
               

               
Cow position:
               
chr6:19264597-19264273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 101
               

               
Conread position:
               
675-1006
               

               
Cow position:
               
chr6:47519949-47520282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
37, 43
               

               
Conread position:
               
675-1006
               

               
Cow position:
               
chr6:58370652-58370975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
34, 165
               

               
Conread position:
               
675-1006
               

               
Cow position:
               
chr6:60783767-60784099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
50, 100
               

               
Conread position:
               
675-1007
               

               
Cow position:
               
chr6:14914346-14914005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
28, 148
               

               
Conread position:
               
675-1007
               

               
Cow position:
               
chr6:24031278-24031592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
109, 66
               

               
Conread position:
               
676-951
               

               
Cow position:
               
chr6:23466128-23465862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
143, 10
               

               
Conread position:
               
678-811
               

               
Cow position:
               
chr6:16411092-16411224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
21, 105
               

               
Conread position:
               
678-886
               

               
Cow position:
               
chr6:12337886-12338101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
21, 166
               

               
Conread position:
               
678-897
               

               
Cow position:
               
chr6:55763755-55763973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
27, 118
               

               
Conread position:
               
678-899
               

               
Cow position:
               
chr6:45065112-45064896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
678-932
               

               
Cow position:
               
chr6:52901136-52901392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
678-972
               

               
Cow position:
               
chr6:20098062-20097765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 162
               

               
Conread position:
               
678-978
               

               
Cow position:
               
chr6:17334154-17333850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
26, 98
               

               
Conread position:
               
678-994
               

               
Cow position:
               
chr6:38641396-38641710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
115, 160
               

               
Conread position:
               
678-998
               

               
Cow position:
               
chr6:9719021-9718697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
29, 5
               

               
Conread position:
               
678-1001
               

               
Cow position:
               
chr6:27240104-27239781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
142, 103
               

               
Conread position:
               
678-1003
               

               
Cow position:
               
chr6:35725997-35726315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 111
               

               
Conread position:
               
678-1006
               

               
Cow position:
               
chr6:7128500-7128176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
59, 27
               

               
Conread position:
               
678-1006
               

               
Cow position:
               
chr6:15242738-15243067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
141, 44
               

               
Conread position:
               
678-1006
               

               
Cow position:
               
chr6:15300917-15300612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
31, 72
               

               
Conread position:
               
678-1006
               

               
Cow position:
               
chr6:16700161-16700482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
20, 113
               

               
Conread position:
               
678-1006
               

               
Cow position:
               
chr6:46292442-46292127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
31, 42
               

               
Conread position:
               
678-1007
               

               
Cow position:
               
chr6:22850343-22850023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
22, 62
               

               
Conread position:
               
678-1007
               

               
Cow position:
               
chr6:54208237-54207903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
26, 14
               

               
Conread position:
               
679-987
               

               
Cow position:
               
chr6:26915233-26915537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 104
               

               
Conread position:
               
679-1002
               

               
Cow position:
               
chr6:63720098-63720416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
98, 161
               

               
Conread position:
               
679-1003
               

               
Cow position:
               
chr6:44194639-44194331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
140, 70
               

               
Conread position:
               
679-1006
               

               
Cow position:
               
chr6:19446162-19446481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
142, 54
               

               
Conread position:
               
679-1006
               

               
Cow position:
               
chr6:49421880-49421568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
103, 60
               

               
Conread position:
               
679-1007
               

               
Cow position:
               
chr6:13564987-13565315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
95, 160
               

               
Conread position:
               
680-917
               

               
Cow position:
               
chr6:66375426-66375194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
139, 94
               

               
Conread position:
               
680-981
               

               
Cow position:
               
chr6:61524297-61524001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
139, 69
               

               
Conread position:
               
680-1003
               

               
Cow position:
               
chr6:54854153-54854475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 94
               

               
Conread position:
               
680-1003
               

               
Cow position:
               
chr6:60118052-60118367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
21, 115
               

               
Conread position:
               
680-1006
               

               
Cow position:
               
chr6:51526395-51526719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
20, 103
               

               
Conread position:
               
680-1006
               

               
Cow position:
               
chr6:68376417-68376087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
103, 33
               

               
Conread position:
               
681-1000
               

               
Cow position:
               
chr6:44867636-44867324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
18, 34
               

               
Conread position:
               
682-938
               

               
Cow position:
               
chr6:50975964-50976208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
682-998
               

               
Cow position:
               
chr6:62929402-62929718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
39, 22
               

               
Conread position:
               
682-1007
               

               
Cow position:
               
chr6:17549075-17548739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
108, 167
               

               
Conread position:
               
682-1007
               

               
Cow position:
               
chr6:17794850-17794526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
27, 38
               

               
Conread position:
               
684-870
               

               
Cow position:
               
chr6:57405215-57405033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
132, 98
               

               
Conread position:
               
684-884
               

               
Cow position:
               
chr6:60850478-60850274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
16, 104
               

               
Conread position:
               
684-1007
               

               
Cow position:
               
chr6:52478506-52478182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 111
               

               
Conread position:
               
685-888
               

               
Cow position:
               
chr6:17245697-17245503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
69, 8
               

               
Conread position:
               
686-899
               

               
Cow position:
               
chr6:60673479-60673686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
100, 33
               

               
Conread position:
               
686-1000
               

               
Cow position:
               
chr6:60274098-60273788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
61, 38
               

               
Conread position:
               
686-1000
               

               
Cow position:
               
chr6:67618045-67617725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
14, 111
               

               
Conread position:
               
689-947
               

               
Cow position:
               
chr6:10487500-10487756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
131, 119
               

               
Conread position:
               
689-952
               

               
Cow position:
               
chr6:6400864-6401122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
93, 114
               

               
Conread position:
               
689-952
               

               
Cow position:
               
chr6:37332020-37332285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 61
               

               
Conread position:
               
689-969
               

               
Cow position:
               
chr6:6067779-6067513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
10, 69
               

               
Conread position:
               
691-917
               

               
Cow position:
               
chr6:20929601-20929375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
62, 46
               

               
Conread position:
               
692-997
               

               
Cow position:
               
chr6:35990317-35990020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
127, 51
               

               
Conread position:
               
693-1001
               

               
Cow position:
               
chr6:143451-143155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
128, 20
               

               
Conread position:
               
693-1006
               

               
Cow position:
               
chr6:32268959-32268659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
234, 77
               

               
Conread position:
               
694-875
               

               
Cow position:
               
chr6:54365085-54364895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
694-1003
               

               
Cow position:
               
chr6:12092075-12091761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
119, 77
               

               
Conread position:
               
695-804
               

               
Cow position:
               
chr6:63169083-63168974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
103, 88
               

               
Conread position:
               
695-1000
               

               
Cow position:
               
chr6:55205393-55205085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
125, 153
               

               
Conread position:
               
697-898
               

               
Cow position:
               
chr6:7190198-7189999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
91, 97
               

               
Conread position:
               
697-1006
               

               
Cow position:
               
chr6:46557974-46558282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
9, 63
               

               
Conread position:
               
698-931
               

               
Cow position:
               
chr6:58608517-58608291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
122, 77
               

               
Conread position:
               
698-1001
               

               
Cow position:
               
chr6:33509712-33510012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
122, 83
               

               
Conread position:
               
698-1003
               

               
Cow position:
               
chr6:4468690-4468991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
257, 94
               

               
Conread position:
               
698-1007
               

               
Cow position:
               
chr6:16288130-16287838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
121, 83
               

               
Conread position:
               
699-952
               

               
Cow position:
               
chr6:2153668-2153427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
121, 14
               

               
Conread position:
               
699-1002
               

               
Cow position:
               
chr6:22985935-22985638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
79, 139
               

               
Conread position:
               
699-1006
               

               
Cow position:
               
chr6:41375693-41375998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
121, 138
               

               
Conread position:
               
700-1007
               

               
Cow position:
               
chr6:694223-693916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
119, 49
               

               
Conread position:
               
707-876
               

               
Cow position:
               
chr6:36493618-36493443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
83, 67
               

               
Conread position:
               
707-981
               

               
Cow position:
               
chr6:67643760-67643486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
112, 79
               

               
Conread position:
               
708-918
               

               
Cow position:
               
chr6:54600278-54600487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
126, 112
               

               
Conread position:
               
708-954
               

               
Cow position:
               
chr6:33929618-33929373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
85, 135
               

               
Conread position:
               
708-1003
               

               
Cow position:
               
chr6:17068717-17068430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
111, 96
               

               
Conread position:
               
708-1006
               

               
Cow position:
               
chr6:9302784-9302495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
13, 80
               

               
Conread position:
               
708-1006
               

               
Cow position:
               
chr6:21004606-21004908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
74, 41
               

               
Conread position:
               
708-1006
               

               
Cow position:
               
chr6:54490803-54490518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
111, 129
               

               
Conread position:
               
708-1006
               

               
Cow position:
               
chr6:55546245-55545944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
83, 67
               

               
Conread position:
               
708-1007
               

               
Cow position:
               
chr6:18118120-18117822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
77, 130
               

               
Conread position:
               
708-1007
               

               
Cow position:
               
chr6:32043784-32044079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
120, 41
               

               
Conread position:
               
709-880
               

               
Cow position:
               
chr6:7170414-7170246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
110, 70
               

               
Conread position:
               
709-891
               

               
Cow position:
               
chr6:15022615-15022434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
110, 74
               

               
Conread position:
               
709-1003
               

               
Cow position:
               
chr6:37395475-37395178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
77, 110
               

               
Conread position:
               
710-874
               

               
Cow position:
               
chr6:1944645-1944809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
27, 128
               

               
Conread position:
               
713-876
               

               
Cow position:
               
chr6:67615494-67615332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
106, 70
               

               
Conread position:
               
713-1006
               

               
Cow position:
               
chr6:5845235-5844940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
126, 63
               

               
Conread position:
               
713-1006
               

               
Cow position:
               
chr6:24536605-24536298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
53, 45
               

               
Conread position:
               
713-1007
               

               
Cow position:
               
chr6:23353490-23353785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
129, 79
               

               
Conread position:
               
714-917
               

               
Cow position:
               
chr6:59770165-59770363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
105, 79
               

               
Conread position:
               
715-891
               

               
Cow position:
               
chr6:60468176-60468351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
104, 78
               

               
Conread position:
               
719-1003
               

               
Cow position:
               
chr6:6195168-6194877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
99, 177
               

               
Conread position:
               
723-1003
               

               
Cow position:
               
chr6:18608868-18608585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
117, 61
               

               
Conread position:
               
724-1006
               

               
Cow position:
               
chr6:60144251-60143971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
94, 52
               

               
Conread position:
               
726-968
               

               
Cow position:
               
chr6:68652403-68652162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
93, 111
               

               
Conread position:
               
727-1003
               

               
Cow position:
               
chr6:68816117-68816395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
200, 108
               

               
Conread position:
               
727-1006
               

               
Cow position:
               
chr6:53145732-53145452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
54, 65
               

               
Conread position:
               
728-980
               

               
Cow position:
               
chr6:31078920-31078666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
91, 46
               

               
Conread position:
               
728-1006
               

               
Cow position:
               
chr6:50504402-50504684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
23, 55
               

               
Conread position:
               
730-1006
               

               
Cow position:
               
chr6:3350973-3351256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
52, 121
               

               
Conread position:
               
731-922
               

               
Cow position:
               
chr6:35613469-35613273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
731-944
               

               
Cow position:
               
chr6:1422440-1422650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 63
               

               
Conread position:
               
731-948
               

               
Cow position:
               
chr6:32853141-32853357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
88, 106
               

               
Conread position:
               
731-1008
               

               
Cow position:
               
chr6:2078865-2078586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
67, 114
               

               
Conread position:
               
732-951
               

               
Cow position:
               
chr6:7130934-7130705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
733-991
               

               
Cow position:
               
chr6:67451415-67451155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
86, 15
               

               
Conread position:
               
733-1006
               

               
Cow position:
               
chr6:30023851-30024105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
86, 12
               

               
Conread position:
               
744-941
               

               
Cow position:
               
chr6:19259377-19259179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
33, 90
               

               
Conread position:
               
749-1007
               

               
Cow position:
               
chr6:63065797-63066066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
19, 56
               

               
Conread position:
               
750-994
               

               
Cow position:
               
chr6:36921001-36920759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
69, 16
               

               
Conread position:
               
753-1007
               

               
Cow position:
               
chr6:57089173-57089433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
754-1006
               

               
Cow position:
               
chr6:53546013-53546257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
65, 42
               

               
Conread position:
               
755-951
               

               
Cow position:
               
chr6:49437311-49437506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
64, 43
               

               
Conread position:
               
755-954
               

               
Cow position:
               
chr6:53089986-53090181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
64, 82
               

               
Conread position:
               
755-1003
               

               
Cow position:
               
chr6:26155130-26155372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
64, 20
               

               
Conread position:
               
755-1003
               

               
Cow position:
               
chr6:48097623-48097378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
26, 44
               

               
Conread position:
               
759-1006
               

               
Cow position:
               
chr6:62056595-62056839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
26, 39
               

               
Conread position:
               
764-1006
               

               
Cow position:
               
chr6:66839189-66839421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
55, 23
               

               
Conread position:
               
773-1006
               

               
Cow position:
               
chr6:42034768-42034998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
5, 21
               

               
Conread position:
               
779-1000
               

               
Cow position:
               
chr6:1871195-1870975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
40, 15
               

               
Conread position:
               
785-1006
               

               
Cow position:
               
chr6:1866738-1866959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
10, 57
               

               
Conread position:
               
803-952
               

               
Cow position:
               
chr6:28900352-28900498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
804-1006
               

               
Cow position:
               
chr6:60850726-60850927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 34
               

               
Conread position:
               
809-1006
               

               
Cow position:
               
chr6:23938091-23938279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
11, 29
               

               
Conread position:
               
822-1000
               

               
Cow position:
               
chr6:36537316-36537141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
822-1006
               

               
Cow position:
               
chr6:21350988-21350803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
100, 17
               

               
Conread position:
               
842-1006
               

               
Cow position:
               
chr6:38032920-38033086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               
Show alignments to all cow chromosomes.