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Cow genome map

           
Conread name:
           
Ss1.1-Lym2-sn70_D11.f.5
        

               
Conread position:
               
637-951
               

               
Cow position:
               
chr9:22696432-22696121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
40, 5
               

               
Conread position:
               
651-834
               

               
Cow position:
               
chr9:29034836-29035024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
30, 37
               

               
Conread position:
               
651-1006
               

               
Cow position:
               
chr9:11123289-11123639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
30, 44
               

               
Conread position:
               
654-774
               

               
Cow position:
               
chr9:8525030-8524906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
655-1007
               

               
Cow position:
               
chr9:26057250-26057589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
17, 12
               

               
Conread position:
               
655-1007
               

               
Cow position:
               
chr9:32676872-32676517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
49, 143
               

               
Conread position:
               
656-950
               

               
Cow position:
               
chr9:50139475-50139182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
16, 91
               

               
Conread position:
               
656-1003
               

               
Cow position:
               
chr9:30477590-30477928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
18, 103
               

               
Conread position:
               
657-950
               

               
Cow position:
               
chr9:31078896-31079180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
6, 32
               

               
Conread position:
               
658-927
               

               
Cow position:
               
chr9:60027383-60027117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
161, 11
               

               
Conread position:
               
659-817
               

               
Cow position:
               
chr9:4323974-4324127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
659-876
               

               
Cow position:
               
chr9:36827317-36827106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
13, 81
               

               
Conread position:
               
659-922
               

               
Cow position:
               
chr9:23430960-23431222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
13, 8
               

               
Conread position:
               
659-922
               

               
Cow position:
               
chr9:51204911-51204652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
16, 96
               

               
Conread position:
               
659-944
               

               
Cow position:
               
chr9:30652520-30652806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
130, 49
               

               
Conread position:
               
659-946
               

               
Cow position:
               
chr9:7634458-7634174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 13
               

               
Conread position:
               
659-981
               

               
Cow position:
               
chr9:44831868-44832182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 85
               

               
Conread position:
               
659-1007
               

               
Cow position:
               
chr9:19555560-19555229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
31, 105
               

               
Conread position:
               
660-877
               

               
Cow position:
               
chr9:38344075-38343860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
133, 178
               

               
Conread position:
               
660-962
               

               
Cow position:
               
chr9:62656986-62656689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
24, 53
               

               
Conread position:
               
660-1006
               

               
Cow position:
               
chr9:8998541-8998194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
122, 182
               

               
Conread position:
               
660-1006
               

               
Cow position:
               
chr9:9595771-9596109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
159, 9
               

               
Conread position:
               
660-1006
               

               
Cow position:
               
chr9:32238567-32238212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
26, 111
               

               
Conread position:
               
663-1006
               

               
Cow position:
               
chr9:43757720-43757385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 13
               

               
Conread position:
               
664-834
               

               
Cow position:
               
chr9:1712298-1712464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
126, 10
               

               
Conread position:
               
664-870
               

               
Cow position:
               
chr9:34742546-34742747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
11, 69
               

               
Conread position:
               
664-884
               

               
Cow position:
               
chr9:35375610-35375389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
21, 132
               

               
Conread position:
               
664-887
               

               
Cow position:
               
chr9:5433819-5433592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
45, 177
               

               
Conread position:
               
664-897
               

               
Cow position:
               
chr9:24873014-24872785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
11, 74
               

               
Conread position:
               
664-897
               

               
Cow position:
               
chr9:35904565-35904796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
146, 125
               

               
Conread position:
               
664-897
               

               
Cow position:
               
chr9:52407352-52407113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
17, 178
               

               
Conread position:
               
664-926
               

               
Cow position:
               
chr9:6367155-6366893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
36, 17
               

               
Conread position:
               
664-944
               

               
Cow position:
               
chr9:42445796-42446077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
12, 177
               

               
Conread position:
               
664-944
               

               
Cow position:
               
chr9:63745992-63745720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 11
               

               
Conread position:
               
664-950
               

               
Cow position:
               
chr9:64559701-64559983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
17, 121
               

               
Conread position:
               
664-952
               

               
Cow position:
               
chr9:18342905-18342630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
664-952
               

               
Cow position:
               
chr9:54528697-54528410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
19, 123
               

               
Conread position:
               
664-979
               

               
Cow position:
               
chr9:5327440-5327130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
14, 104
               

               
Conread position:
               
664-1003
               

               
Cow position:
               
chr9:3070237-3070573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
42, 127
               

               
Conread position:
               
664-1003
               

               
Cow position:
               
chr9:20321926-20322248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
44, 15
               

               
Conread position:
               
664-1006
               

               
Cow position:
               
chr9:17799813-17799476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
17, 177
               

               
Conread position:
               
664-1006
               

               
Cow position:
               
chr9:22151901-22152241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
14, 131
               

               
Conread position:
               
664-1006
               

               
Cow position:
               
chr9:22318528-22318202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
19, 55
               

               
Conread position:
               
664-1006
               

               
Cow position:
               
chr9:28747339-28747677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 62
               

               
Conread position:
               
664-1007
               

               
Cow position:
               
chr9:15215499-15215850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
12, 136
               

               
Conread position:
               
664-1007
               

               
Cow position:
               
chr9:17871921-17872267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
17, 184
               

               
Conread position:
               
665-874
               

               
Cow position:
               
chr9:35533770-35533980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
22, 131
               

               
Conread position:
               
665-1006
               

               
Cow position:
               
chr9:20579427-20579747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
666-932
               

               
Cow position:
               
chr9:6596060-6596315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
153, 19
               

               
Conread position:
               
667-950
               

               
Cow position:
               
chr9:32115430-32115703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
152, 65
               

               
Conread position:
               
669-951
               

               
Cow position:
               
chr9:20416339-20416609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
152, 47
               

               
Conread position:
               
669-1006
               

               
Cow position:
               
chr9:19034515-19034195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
37, 5
               

               
Conread position:
               
670-923
               

               
Cow position:
               
chr9:46316611-46316857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
149, 60
               

               
Conread position:
               
670-931
               

               
Cow position:
               
chr9:55321812-55321553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
112, 49
               

               
Conread position:
               
670-951
               

               
Cow position:
               
chr9:17518314-17518593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 95
               

               
Conread position:
               
670-1006
               

               
Cow position:
               
chr9:60394876-60395208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
113, 125
               

               
Conread position:
               
671-799
               

               
Cow position:
               
chr9:8546492-8546367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
671-812
               

               
Cow position:
               
chr9:1952095-1952235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
671-817
               

               
Cow position:
               
chr9:18002775-18002924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
671-847
               

               
Cow position:
               
chr9:30195383-30195214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
148, 56
               

               
Conread position:
               
671-868
               

               
Cow position:
               
chr9:22361185-22360989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
106, 41
               

               
Conread position:
               
671-875
               

               
Cow position:
               
chr9:6225278-6225482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
31, 113
               

               
Conread position:
               
671-875
               

               
Cow position:
               
chr9:31292862-31292661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
108, 117
               

               
Conread position:
               
671-887
               

               
Cow position:
               
chr9:25546810-25546600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
149, 37
               

               
Conread position:
               
671-891
               

               
Cow position:
               
chr9:5509895-5509680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
148, 79
               

               
Conread position:
               
671-891
               

               
Cow position:
               
chr9:43871153-43870931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
27, 177
               

               
Conread position:
               
671-893
               

               
Cow position:
               
chr9:54681677-54681463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
28, 17
               

               
Conread position:
               
671-899
               

               
Cow position:
               
chr9:11168904-11168678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
38, 112
               

               
Conread position:
               
671-899
               

               
Cow position:
               
chr9:17928933-17928705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
104, 117
               

               
Conread position:
               
671-899
               

               
Cow position:
               
chr9:49417161-49416935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
38, 111
               

               
Conread position:
               
671-917
               

               
Cow position:
               
chr9:32371587-32371821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
148, 100
               

               
Conread position:
               
671-922
               

               
Cow position:
               
chr9:19493289-19493541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
78, 166
               

               
Conread position:
               
671-931
               

               
Cow position:
               
chr9:38961260-38961512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
23, 89
               

               
Conread position:
               
671-932
               

               
Cow position:
               
chr9:34468411-34468663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
111, 37
               

               
Conread position:
               
671-940
               

               
Cow position:
               
chr9:5763460-5763721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
148, 66
               

               
Conread position:
               
671-943
               

               
Cow position:
               
chr9:55074956-55075223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
41, 115
               

               
Conread position:
               
671-944
               

               
Cow position:
               
chr9:7409956-7409667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
31, 275
               

               
Conread position:
               
671-944
               

               
Cow position:
               
chr9:28354692-28354422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
148, 78
               

               
Conread position:
               
671-944
               

               
Cow position:
               
chr9:56773253-56772981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
104, 63
               

               
Conread position:
               
671-949
               

               
Cow position:
               
chr9:61997425-61997703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
32, 88
               

               
Conread position:
               
671-950
               

               
Cow position:
               
chr9:21888343-21888067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
28, 119
               

               
Conread position:
               
671-950
               

               
Cow position:
               
chr9:44467179-44467441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
671-951
               

               
Cow position:
               
chr9:1520560-1520841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
33, 115
               

               
Conread position:
               
671-951
               

               
Cow position:
               
chr9:1973116-1972846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
31, 112
               

               
Conread position:
               
671-951
               

               
Cow position:
               
chr9:4267810-4268086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
148, 94
               

               
Conread position:
               
671-951
               

               
Cow position:
               
chr9:8563011-8562720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
107, 186
               

               
Conread position:
               
671-951
               

               
Cow position:
               
chr9:9443423-9443702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
30, 124
               

               
Conread position:
               
671-951
               

               
Cow position:
               
chr9:9654138-9654411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
132, 111
               

               
Conread position:
               
671-951
               

               
Cow position:
               
chr9:9753215-9753494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
28, 108
               

               
Conread position:
               
671-951
               

               
Cow position:
               
chr9:11319460-11319738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
148, 92
               

               
Conread position:
               
671-951
               

               
Cow position:
               
chr9:16300392-16300674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
32, 80
               

               
Conread position:
               
671-951
               

               
Cow position:
               
chr9:18216930-18217201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
148, 61
               

               
Conread position:
               
671-951
               

               
Cow position:
               
chr9:50543250-50543529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
103, 24
               

               
Conread position:
               
671-951
               

               
Cow position:
               
chr9:62442464-62442186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
30, 21
               

               
Conread position:
               
671-952
               

               
Cow position:
               
chr9:766979-767255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
78, 122
               

               
Conread position:
               
671-952
               

               
Cow position:
               
chr9:36445797-36445513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
114, 46
               

               
Conread position:
               
671-952
               

               
Cow position:
               
chr9:55084123-55084406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
33, 41
               

               
Conread position:
               
671-980
               

               
Cow position:
               
chr9:9552261-9551958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
142, 36
               

               
Conread position:
               
671-981
               

               
Cow position:
               
chr9:13205394-13205706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
94, 61
               

               
Conread position:
               
671-991
               

               
Cow position:
               
chr9:9815589-9815266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
33, 90
               

               
Conread position:
               
671-992
               

               
Cow position:
               
chr9:33119712-33120036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 166
               

               
Conread position:
               
671-997
               

               
Cow position:
               
chr9:10144302-10144635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
25, 143
               

               
Conread position:
               
671-998
               

               
Cow position:
               
chr9:23388504-23388831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
129, 88
               

               
Conread position:
               
671-998
               

               
Cow position:
               
chr9:26440626-26440966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
33, 153
               

               
Conread position:
               
671-1001
               

               
Cow position:
               
chr9:29006735-29006405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 14
               

               
Conread position:
               
671-1002
               

               
Cow position:
               
chr9:29184959-29185295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
115, 168
               

               
Conread position:
               
671-1003
               

               
Cow position:
               
chr9:10010978-10010656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
28, 108
               

               
Conread position:
               
671-1003
               

               
Cow position:
               
chr9:34957881-34958208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 69
               

               
Conread position:
               
671-1003
               

               
Cow position:
               
chr9:42498003-42497672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
34, 130
               

               
Conread position:
               
671-1003
               

               
Cow position:
               
chr9:52578363-52578694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
148, 59
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr9:4340996-4341315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 111
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr9:5501031-5500705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
100, 159
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr9:6192289-6192616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
148, 49
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr9:6933900-6934240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
27, 53
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr9:8901050-8901388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
38, 15
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr9:9403002-9403330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
147, 111
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr9:9723710-9724038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
53, 33
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr9:10118491-10118825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
131, 118
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr9:21459984-21460312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
120, 34
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr9:24887372-24887046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 9
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr9:25557139-25556824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
114, 63
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr9:26403959-26403636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
36, 119
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr9:28726547-28726888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
127, 167
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr9:30124094-30123771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
282, 81
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr9:33218778-33219116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
117, 65
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr9:34286974-34286639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 33
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr9:34689429-34689764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
108, 10
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr9:36490718-36491063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
103, 139
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr9:41679919-41679603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
150, 112
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr9:41728430-41728101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 25
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr9:48628201-48627864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 59
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr9:53762871-53762540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
121, 68
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr9:55118253-55117923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
120, 91
               

               
Conread position:
               
671-1006
               

               
Cow position:
               
chr9:55256377-55256708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 111
               

               
Conread position:
               
671-1007
               

               
Cow position:
               
chr9:6338972-6338633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
33, 169
               

               
Conread position:
               
671-1007
               

               
Cow position:
               
chr9:20900948-20901278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
25, 99
               

               
Conread position:
               
671-1007
               

               
Cow position:
               
chr9:33598155-33597813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
32, 117
               

               
Conread position:
               
671-1007
               

               
Cow position:
               
chr9:40215417-40215087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
35, 107
               

               
Conread position:
               
671-1007
               

               
Cow position:
               
chr9:45141431-45141756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
108, 20
               

               
Conread position:
               
672-887
               

               
Cow position:
               
chr9:28983352-28983143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
131, 33
               

               
Conread position:
               
672-891
               

               
Cow position:
               
chr9:27029531-27029749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 53
               

               
Conread position:
               
672-898
               

               
Cow position:
               
chr9:9823333-9823557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
156, 0
               

               
Conread position:
               
672-898
               

               
Cow position:
               
chr9:47906107-47906333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
30, 78
               

               
Conread position:
               
672-900
               

               
Cow position:
               
chr9:63905435-63905661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 106
               

               
Conread position:
               
672-907
               

               
Cow position:
               
chr9:47500034-47500272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
32, 167
               

               
Conread position:
               
672-909
               

               
Cow position:
               
chr9:44921218-44921462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
147, 164
               

               
Conread position:
               
672-932
               

               
Cow position:
               
chr9:28948025-28947778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
147, 45
               

               
Conread position:
               
672-950
               

               
Cow position:
               
chr9:3738049-3738325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
110, 97
               

               
Conread position:
               
672-957
               

               
Cow position:
               
chr9:52505134-52505414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
32, 106
               

               
Conread position:
               
672-998
               

               
Cow position:
               
chr9:21030485-21030153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
34, 125
               

               
Conread position:
               
672-998
               

               
Cow position:
               
chr9:43207204-43207529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
32, 102
               

               
Conread position:
               
672-1006
               

               
Cow position:
               
chr9:13169493-13169824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
147, 16
               

               
Conread position:
               
672-1006
               

               
Cow position:
               
chr9:20091214-20090901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
147, 61
               

               
Conread position:
               
672-1006
               

               
Cow position:
               
chr9:38793186-38792856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
147, 116
               

               
Conread position:
               
672-1006
               

               
Cow position:
               
chr9:41416527-41416171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
31, 185
               

               
Conread position:
               
672-1006
               

               
Cow position:
               
chr9:58979570-58979246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
175, 110
               

               
Conread position:
               
672-1006
               

               
Cow position:
               
chr9:61303176-61302844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 104
               

               
Conread position:
               
672-1008
               

               
Cow position:
               
chr9:11299518-11299834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 110
               

               
Conread position:
               
675-899
               

               
Cow position:
               
chr9:8534515-8534742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
32, 76
               

               
Conread position:
               
675-943
               

               
Cow position:
               
chr9:9461485-9461750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
34, 124
               

               
Conread position:
               
675-951
               

               
Cow position:
               
chr9:33093124-33092856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
31, 79
               

               
Conread position:
               
675-951
               

               
Cow position:
               
chr9:37678057-37677788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
26, 46
               

               
Conread position:
               
675-962
               

               
Cow position:
               
chr9:824130-823852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
29, 85
               

               
Conread position:
               
675-969
               

               
Cow position:
               
chr9:64091854-64091564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
113, 121
               

               
Conread position:
               
675-981
               

               
Cow position:
               
chr9:17740778-17741075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
280, 84
               

               
Conread position:
               
675-1003
               

               
Cow position:
               
chr9:13670802-13670480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
116, 62
               

               
Conread position:
               
675-1003
               

               
Cow position:
               
chr9:18381029-18380712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 45
               

               
Conread position:
               
675-1003
               

               
Cow position:
               
chr9:22443452-22443779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
30, 110
               

               
Conread position:
               
675-1003
               

               
Cow position:
               
chr9:34697127-34697458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
30, 109
               

               
Conread position:
               
675-1003
               

               
Cow position:
               
chr9:55287728-55288045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
135, 67
               

               
Conread position:
               
675-1003
               

               
Cow position:
               
chr9:62151271-62150955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
179, 57
               

               
Conread position:
               
675-1006
               

               
Cow position:
               
chr9:20681233-20681561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
29, 99
               

               
Conread position:
               
675-1006
               

               
Cow position:
               
chr9:26477386-26477053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
29, 67
               

               
Conread position:
               
675-1006
               

               
Cow position:
               
chr9:34374762-34375086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
45, 78
               

               
Conread position:
               
675-1006
               

               
Cow position:
               
chr9:50202739-50202395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
148, 87
               

               
Conread position:
               
675-1006
               

               
Cow position:
               
chr9:61739088-61738762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
31, 60
               

               
Conread position:
               
675-1007
               

               
Cow position:
               
chr9:31347124-31346789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
96, 29
               

               
Conread position:
               
675-1007
               

               
Cow position:
               
chr9:56032159-56032477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
149, 18
               

               
Conread position:
               
678-824
               

               
Cow position:
               
chr9:34666585-34666442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
141, 56
               

               
Conread position:
               
678-834
               

               
Cow position:
               
chr9:28773288-28773133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
141, 105
               

               
Conread position:
               
678-877
               

               
Cow position:
               
chr9:5442159-5441959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
9, 129
               

               
Conread position:
               
678-899
               

               
Cow position:
               
chr9:24997354-24997569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
161, 30
               

               
Conread position:
               
678-905
               

               
Cow position:
               
chr9:43875555-43875777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
103, 24
               

               
Conread position:
               
678-937
               

               
Cow position:
               
chr9:50080879-50081128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
21, 102
               

               
Conread position:
               
678-949
               

               
Cow position:
               
chr9:11313343-11313614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
21, 120
               

               
Conread position:
               
678-951
               

               
Cow position:
               
chr9:9405884-9406155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
118, 71
               

               
Conread position:
               
678-952
               

               
Cow position:
               
chr9:39681516-39681231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
27, 118
               

               
Conread position:
               
678-981
               

               
Cow position:
               
chr9:20848098-20847807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
141, 158
               

               
Conread position:
               
678-981
               

               
Cow position:
               
chr9:57896953-57897237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
141, 35
               

               
Conread position:
               
678-1001
               

               
Cow position:
               
chr9:56453495-56453192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
141, 71
               

               
Conread position:
               
678-1003
               

               
Cow position:
               
chr9:1755975-1756307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
25, 118
               

               
Conread position:
               
678-1006
               

               
Cow position:
               
chr9:5263667-5263345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 41
               

               
Conread position:
               
678-1006
               

               
Cow position:
               
chr9:19067944-19067610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
141, 53
               

               
Conread position:
               
678-1006
               

               
Cow position:
               
chr9:26279010-26279332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 27
               

               
Conread position:
               
678-1006
               

               
Cow position:
               
chr9:55795923-55795599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
113, 34
               

               
Conread position:
               
678-1007
               

               
Cow position:
               
chr9:32307070-32307394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
132, 93
               

               
Conread position:
               
678-1007
               

               
Cow position:
               
chr9:51720735-51721047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
25, 105
               

               
Conread position:
               
678-1008
               

               
Cow position:
               
chr9:8723960-8723634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
110, 58
               

               
Conread position:
               
679-817
               

               
Cow position:
               
chr9:60037819-60037680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
679-891
               

               
Cow position:
               
chr9:22114469-22114679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
159, 0
               

               
Conread position:
               
679-898
               

               
Cow position:
               
chr9:5209746-5209529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
140, 117
               

               
Conread position:
               
679-949
               

               
Cow position:
               
chr9:3782526-3782264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
24, 85
               

               
Conread position:
               
679-951
               

               
Cow position:
               
chr9:8288783-8288514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
95, 114
               

               
Conread position:
               
679-994
               

               
Cow position:
               
chr9:47590814-47591131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
28, 75
               

               
Conread position:
               
679-1006
               

               
Cow position:
               
chr9:5227002-5227319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
25, 128
               

               
Conread position:
               
679-1006
               

               
Cow position:
               
chr9:5456008-5456331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
23, 98
               

               
Conread position:
               
679-1006
               

               
Cow position:
               
chr9:45285365-45285698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 13
               

               
Conread position:
               
680-923
               

               
Cow position:
               
chr9:49292981-49293219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
139, 92
               

               
Conread position:
               
680-944
               

               
Cow position:
               
chr9:5594665-5594407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
22, 63
               

               
Conread position:
               
680-1002
               

               
Cow position:
               
chr9:56087903-56088233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 109
               

               
Conread position:
               
680-1003
               

               
Cow position:
               
chr9:12910237-12910556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 113
               

               
Conread position:
               
680-1006
               

               
Cow position:
               
chr9:50606784-50607089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
139, 110
               

               
Conread position:
               
680-1006
               

               
Cow position:
               
chr9:51620600-51620285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
247, 13
               

               
Conread position:
               
680-1006
               

               
Cow position:
               
chr9:61022775-61022462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
255, 116
               

               
Conread position:
               
683-888
               

               
Cow position:
               
chr9:41789445-41789243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
136, 34
               

               
Conread position:
               
683-973
               

               
Cow position:
               
chr9:48106956-48107237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
17, 58
               

               
Conread position:
               
683-1003
               

               
Cow position:
               
chr9:30402258-30402585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
21, 123
               

               
Conread position:
               
684-833
               

               
Cow position:
               
chr9:42509275-42509129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
135, 56
               

               
Conread position:
               
684-897
               

               
Cow position:
               
chr9:29191506-29191296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
16, 80
               

               
Conread position:
               
684-904
               

               
Cow position:
               
chr9:1916448-1916228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
16, 108
               

               
Conread position:
               
684-932
               

               
Cow position:
               
chr9:11303917-11304160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
22, 70
               

               
Conread position:
               
684-1006
               

               
Cow position:
               
chr9:9573493-9573161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
16, 218
               

               
Conread position:
               
684-1006
               

               
Cow position:
               
chr9:52637999-52638329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
16, 167
               

               
Conread position:
               
685-990
               

               
Cow position:
               
chr9:39011317-39011613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
134, 60
               

               
Conread position:
               
685-1006
               

               
Cow position:
               
chr9:26344809-26345121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 34
               

               
Conread position:
               
689-1003
               

               
Cow position:
               
chr9:11310019-11309701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
17, 105
               

               
Conread position:
               
689-1008
               

               
Cow position:
               
chr9:27279465-27279145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
16, 86
               

               
Conread position:
               
689-1008
               

               
Cow position:
               
chr9:33114501-33114178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
114, 19
               

               
Conread position:
               
691-997
               

               
Cow position:
               
chr9:25964674-25964990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
13, 94
               

               
Conread position:
               
692-1006
               

               
Cow position:
               
chr9:59013181-59013497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
93, 54
               

               
Conread position:
               
693-899
               

               
Cow position:
               
chr9:43937091-43936893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
128, 95
               

               
Conread position:
               
695-1006
               

               
Cow position:
               
chr9:7953049-7952743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
121, 44
               

               
Conread position:
               
696-1006
               

               
Cow position:
               
chr9:32669799-32670105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
124, 96
               

               
Conread position:
               
697-931
               

               
Cow position:
               
chr9:5219021-5219256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
122, 101
               

               
Conread position:
               
698-949
               

               
Cow position:
               
chr9:17310416-17310662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
77, 100
               

               
Conread position:
               
698-979
               

               
Cow position:
               
chr9:44833820-44834097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
120, 76
               

               
Conread position:
               
698-998
               

               
Cow position:
               
chr9:34284094-34283802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
121, 64
               

               
Conread position:
               
698-1003
               

               
Cow position:
               
chr9:4262946-4263245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
100, 117
               

               
Conread position:
               
698-1006
               

               
Cow position:
               
chr9:38624481-38624783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
12, 38
               

               
Conread position:
               
699-951
               

               
Cow position:
               
chr9:35105645-35105896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
75, 24
               

               
Conread position:
               
699-1006
               

               
Cow position:
               
chr9:62724682-62724383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
72, 119
               

               
Conread position:
               
700-927
               

               
Cow position:
               
chr9:1867594-1867371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
701-931
               

               
Cow position:
               
chr9:10819689-10819912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
118, 82
               

               
Conread position:
               
702-1006
               

               
Cow position:
               
chr9:3573612-3573305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
28, 135
               

               
Conread position:
               
707-1003
               

               
Cow position:
               
chr9:36628241-36627966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
112, 40
               

               
Conread position:
               
707-1004
               

               
Cow position:
               
chr9:31359738-31359448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
203, 68
               

               
Conread position:
               
708-889
               

               
Cow position:
               
chr9:41486104-41486285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
111, 129
               

               
Conread position:
               
708-1003
               

               
Cow position:
               
chr9:3186264-3185973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
112, 66
               

               
Conread position:
               
708-1003
               

               
Cow position:
               
chr9:48730564-48730272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
112, 29
               

               
Conread position:
               
708-1006
               

               
Cow position:
               
chr9:6189235-6189522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
111, 74
               

               
Conread position:
               
708-1006
               

               
Cow position:
               
chr9:34410259-34410552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
112, 84
               

               
Conread position:
               
708-1007
               

               
Cow position:
               
chr9:40005612-40005317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
105, 85
               

               
Conread position:
               
709-1006
               

               
Cow position:
               
chr9:41283149-41282853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
110, 78
               

               
Conread position:
               
709-1006
               

               
Cow position:
               
chr9:44396795-44396500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
17, 66
               

               
Conread position:
               
710-1006
               

               
Cow position:
               
chr9:51566360-51566657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
109, 49
               

               
Conread position:
               
713-1003
               

               
Cow position:
               
chr9:8636801-8636522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
38, 82
               

               
Conread position:
               
713-1007
               

               
Cow position:
               
chr9:13743801-13744094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
108, 50
               

               
Conread position:
               
715-1006
               

               
Cow position:
               
chr9:4630234-4629950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 37
               

               
Conread position:
               
724-1002
               

               
Cow position:
               
chr9:9311980-9311704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
96, 19
               

               
Conread position:
               
724-1006
               

               
Cow position:
               
chr9:33584562-33584843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 86
               

               
Conread position:
               
727-1003
               

               
Cow position:
               
chr9:53109370-53109095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
92, 115
               

               
Conread position:
               
727-1006
               

               
Cow position:
               
chr9:58131846-58132107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
92, 54
               

               
Conread position:
               
728-1003
               

               
Cow position:
               
chr9:21080679-21080417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
91, 65
               

               
Conread position:
               
728-1003
               

               
Cow position:
               
chr9:38941315-38941593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
91, 54
               

               
Conread position:
               
728-1007
               

               
Cow position:
               
chr9:54493254-54492978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
62, 9
               

               
Conread position:
               
729-1007
               

               
Cow position:
               
chr9:3378868-3378602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
84, 53
               

               
Conread position:
               
731-1006
               

               
Cow position:
               
chr9:23955870-23956136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
88, 63
               

               
Conread position:
               
733-899
               

               
Cow position:
               
chr9:26310620-26310454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
77, 104
               

               
Conread position:
               
734-1008
               

               
Cow position:
               
chr9:21387533-21387269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
64, 104
               

               
Conread position:
               
735-932
               

               
Cow position:
               
chr9:28754929-28754732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
61, 48
               

               
Conread position:
               
736-926
               

               
Cow position:
               
chr9:32981963-32982154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
85, 62
               

               
Conread position:
               
744-1006
               

               
Cow position:
               
chr9:9460076-9459830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
43, 36
               

               
Conread position:
               
745-1003
               

               
Cow position:
               
chr9:29194923-29195188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
74, 19
               

               
Conread position:
               
749-1006
               

               
Cow position:
               
chr9:37199219-37198968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
70, 44
               

               
Conread position:
               
750-1006
               

               
Cow position:
               
chr9:17840580-17840838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
38, 89
               

               
Conread position:
               
759-1003
               

               
Cow position:
               
chr9:34024787-34024543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
60, 79
               

               
Conread position:
               
759-1006
               

               
Cow position:
               
chr9:9686328-9686577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
60, 24
               

               
Conread position:
               
761-1006
               

               
Cow position:
               
chr9:8628832-8629071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
58, 77
               

               
Conread position:
               
764-999
               

               
Cow position:
               
chr9:63361635-63361863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
14, 79
               

               
Conread position:
               
765-1006
               

               
Cow position:
               
chr9:41785291-41785062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
54, 35
               

               
Conread position:
               
775-1003
               

               
Cow position:
               
chr9:57131564-57131342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
44, 16
               

               
Conread position:
               
799-951
               

               
Cow position:
               
chr9:6293643-6293492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
22, 39
               

               
Conread position:
               
801-951
               

               
Cow position:
               
chr9:55354657-55354507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
18, 41
               

               
Conread position:
               
804-1003
               

               
Cow position:
               
chr9:5104360-5104566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
15, 38
               

               
Conread position:
               
805-1003
               

               
Cow position:
               
chr9:22165671-22165873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
14, 37
               

               
Conread position:
               
815-1006
               

               
Cow position:
               
chr9:12773721-12773535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
140, 26
               

               
Conread position:
               
819-1006
               

               
Cow position:
               
chr9:19771393-19771201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
11, 166
               

               
Conread position:
               
820-1001
               

               
Cow position:
               
chr9:34707286-34707464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
133, 23
               

               
Conread position:
               
820-1007
               

               
Cow position:
               
chr9:42508858-42508668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
59, 21
               

               
Conread position:
               
821-1003
               

               
Cow position:
               
chr9:26394325-26394504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
134, 16
               

               
Conread position:
               
821-1006
               

               
Cow position:
               
chr9:19718315-19718493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
822-1003
               

               
Cow position:
               
chr9:40603692-40603511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
115, 21
               

               
Conread position:
               
829-1006
               

               
Cow position:
               
chr9:32052293-32052117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
126, 13
               

               
Conread position:
               
841-1003
               

               
Cow position:
               
chr9:40984511-40984348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
113, 86
               

               
Conread position:
               
842-1006
               

               
Cow position:
               
chr9:24079307-24079146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
87, 0
               
Show alignments to all cow chromosomes.