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Cow genome map

           
Conread name:
           
Ss1.1-Mixc-0025o19.5
        

               
Conread position:
               
14-202
               

               
Cow position:
               
chr1:9533962-9534143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
33, 12
               

               
Conread position:
               
16-422
               

               
Cow position:
               
chr1:92370577-92370188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
9, 135
               

               
Conread position:
               
17-395
               

               
Cow position:
               
chr1:32001532-32001169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
112, 62
               

               
Conread position:
               
18-202
               

               
Cow position:
               
chr1:102113317-102113134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
64, 7
               

               
Conread position:
               
19-432
               

               
Cow position:
               
chr1:724526-724929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
53, 19
               

               
Conread position:
               
27-476
               

               
Cow position:
               
chr1:7748011-7748449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
33, 174
               

               
Conread position:
               
29-486
               

               
Cow position:
               
chr1:90621714-90621259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 162
               

               
Conread position:
               
31-350
               

               
Cow position:
               
chr1:19482270-19481971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
206, 38
               

               
Conread position:
               
31-422
               

               
Cow position:
               
chr1:63596257-63595871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
46, 144
               

               
Conread position:
               
31-451
               

               
Cow position:
               
chr1:3923993-3923594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
6, 17
               

               
Conread position:
               
32-217
               

               
Cow position:
               
chr1:57698650-57698461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
45, 113
               

               
Conread position:
               
32-478
               

               
Cow position:
               
chr1:46030549-46030126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
87, 37
               

               
Conread position:
               
32-496
               

               
Cow position:
               
chr1:24778175-24777729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
323, 45
               

               
Conread position:
               
33-196
               

               
Cow position:
               
chr1:83594003-83593838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
44, 34
               

               
Conread position:
               
33-197
               

               
Cow position:
               
chr1:97806593-97806754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
33-201
               

               
Cow position:
               
chr1:87888207-87888370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
44, 70
               

               
Conread position:
               
33-206
               

               
Cow position:
               
chr1:56674325-56674152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
44, 57
               

               
Conread position:
               
33-387
               

               
Cow position:
               
chr1:75933076-75933411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
13, 45
               

               
Conread position:
               
33-425
               

               
Cow position:
               
chr1:41056488-41056863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
33-434
               

               
Cow position:
               
chr1:49082527-49082938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 179
               

               
Conread position:
               
33-494
               

               
Cow position:
               
chr1:13810453-13810909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
54, 116
               

               
Conread position:
               
34-169
               

               
Cow position:
               
chr1:56413714-56413577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
34-422
               

               
Cow position:
               
chr1:42398391-42398016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
85, 43
               

               
Conread position:
               
34-432
               

               
Cow position:
               
chr1:42256702-42256315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
44, 173
               

               
Conread position:
               
34-459
               

               
Cow position:
               
chr1:49317687-49317288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
95, 6
               

               
Conread position:
               
35-200
               

               
Cow position:
               
chr1:68282603-68282772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
35-201
               

               
Cow position:
               
chr1:98708249-98708410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
36-202
               

               
Cow position:
               
chr1:98380769-98380601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
41, 64
               

               
Conread position:
               
36-346
               

               
Cow position:
               
chr1:4414400-4414101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
199, 35
               

               
Conread position:
               
36-349
               

               
Cow position:
               
chr1:39510243-39509948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
36, 42
               

               
Conread position:
               
36-373
               

               
Cow position:
               
chr1:45007274-45007602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
41, 37
               

               
Conread position:
               
36-379
               

               
Cow position:
               
chr1:85593580-85593914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
42, 9
               

               
Conread position:
               
36-463
               

               
Cow position:
               
chr1:69539505-69539902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
232, 33
               

               
Conread position:
               
36-470
               

               
Cow position:
               
chr1:70094145-70094562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
45, 162
               

               
Conread position:
               
37-463
               

               
Cow position:
               
chr1:4691400-4691805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
41, 24
               

               
Conread position:
               
38-167
               

               
Cow position:
               
chr1:43893736-43893861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
38-168
               

               
Cow position:
               
chr1:33717031-33717165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
38-169
               

               
Cow position:
               
chr1:52488153-52488023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
84, 38
               

               
Conread position:
               
38-175
               

               
Cow position:
               
chr1:99118195-99118333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
40, 123
               

               
Conread position:
               
38-177
               

               
Cow position:
               
chr1:84786580-84786721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 98
               

               
Conread position:
               
38-180
               

               
Cow position:
               
chr1:75382801-75382943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
39, 95
               

               
Conread position:
               
38-186
               

               
Cow position:
               
chr1:31414149-31414006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
38-188
               

               
Cow position:
               
chr1:30504280-30504428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
39, 61
               

               
Conread position:
               
38-191
               

               
Cow position:
               
chr1:4573330-4573481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
39, 54
               

               
Conread position:
               
38-191
               

               
Cow position:
               
chr1:32013766-32013916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
58, 40
               

               
Conread position:
               
38-191
               

               
Cow position:
               
chr1:82861584-82861741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
38-192
               

               
Cow position:
               
chr1:7449942-7450091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
90, 44
               

               
Conread position:
               
38-195
               

               
Cow position:
               
chr1:3035183-3035029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
38-197
               

               
Cow position:
               
chr1:79278636-79278481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
38-197
               

               
Cow position:
               
chr1:89395402-89395567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
38-198
               

               
Cow position:
               
chr1:1165411-1165567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
39, 109
               

               
Conread position:
               
38-198
               

               
Cow position:
               
chr1:23969227-23969071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
17, 40
               

               
Conread position:
               
38-199
               

               
Cow position:
               
chr1:24235711-24235551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
40, 151
               

               
Conread position:
               
38-199
               

               
Cow position:
               
chr1:49753740-49753896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
38-199
               

               
Cow position:
               
chr1:75967246-75967399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
38-199
               

               
Cow position:
               
chr1:89438126-89437970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
130, 39
               

               
Conread position:
               
38-199
               

               
Cow position:
               
chr1:96472240-96472413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
38-200
               

               
Cow position:
               
chr1:10655287-10655453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
38-200
               

               
Cow position:
               
chr1:18697543-18697378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
44, 151
               

               
Conread position:
               
38-200
               

               
Cow position:
               
chr1:31235122-31234962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
39, 143
               

               
Conread position:
               
38-200
               

               
Cow position:
               
chr1:34000715-34000881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
38-200
               

               
Cow position:
               
chr1:63905664-63905503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
39, 13
               

               
Conread position:
               
38-200
               

               
Cow position:
               
chr1:83982566-83982401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
38-200
               

               
Cow position:
               
chr1:98310871-98311037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
38-200
               

               
Cow position:
               
chr1:99637970-99637810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
39, 53
               

               
Conread position:
               
38-201
               

               
Cow position:
               
chr1:21835758-21835913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
38-201
               

               
Cow position:
               
chr1:51628692-51628529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
48, 111
               

               
Conread position:
               
38-201
               

               
Cow position:
               
chr1:56748399-56748564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
38-201
               

               
Cow position:
               
chr1:81180170-81180002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
38-201
               

               
Cow position:
               
chr1:81868916-81868758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
38-201
               

               
Cow position:
               
chr1:95327343-95327181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
39, 113
               

               
Conread position:
               
38-202
               

               
Cow position:
               
chr1:15311678-15311840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
48, 54
               

               
Conread position:
               
38-202
               

               
Cow position:
               
chr1:24597462-24597628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
39, 61
               

               
Conread position:
               
38-202
               

               
Cow position:
               
chr1:44164888-44165053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
38-202
               

               
Cow position:
               
chr1:55146611-55146773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
39, 71
               

               
Conread position:
               
38-202
               

               
Cow position:
               
chr1:58419742-58419908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
38-202
               

               
Cow position:
               
chr1:68827096-68826934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
92, 39
               

               
Conread position:
               
38-202
               

               
Cow position:
               
chr1:68951441-68951598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
38-202
               

               
Cow position:
               
chr1:69941155-69940996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
91, 39
               

               
Conread position:
               
38-202
               

               
Cow position:
               
chr1:84239297-84239142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
38-202
               

               
Cow position:
               
chr1:84240709-84240863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
38-202
               

               
Cow position:
               
chr1:95215376-95215210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
38-202
               

               
Cow position:
               
chr1:95654906-95654743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
39, 121
               

               
Conread position:
               
38-202
               

               
Cow position:
               
chr1:98557974-98557813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
39, 114
               

               
Conread position:
               
38-211
               

               
Cow position:
               
chr1:11770484-11770312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
81, 147
               

               
Conread position:
               
38-211
               

               
Cow position:
               
chr1:43340813-43340633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
40, 166
               

               
Conread position:
               
38-211
               

               
Cow position:
               
chr1:66430106-66430276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
36, 97
               

               
Conread position:
               
38-211
               

               
Cow position:
               
chr1:79663856-79663689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
39, 79
               

               
Conread position:
               
38-211
               

               
Cow position:
               
chr1:101547233-101547055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 165
               

               
Conread position:
               
38-212
               

               
Cow position:
               
chr1:54199574-54199399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-212
               

               
Cow position:
               
chr1:56657848-56658013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
80, 32
               

               
Conread position:
               
38-212
               

               
Cow position:
               
chr1:57639711-57639536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
39, 77
               

               
Conread position:
               
38-213
               

               
Cow position:
               
chr1:33811744-33811909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
38-213
               

               
Cow position:
               
chr1:47008840-47009011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
38, 54
               

               
Conread position:
               
38-213
               

               
Cow position:
               
chr1:52956069-52956236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
166, 31
               

               
Conread position:
               
38-213
               

               
Cow position:
               
chr1:53540200-53540371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
23, 111
               

               
Conread position:
               
38-213
               

               
Cow position:
               
chr1:73561840-73561668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-214
               

               
Cow position:
               
chr1:23634091-23633928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
88, 29
               

               
Conread position:
               
38-214
               

               
Cow position:
               
chr1:55135643-55135815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
38-215
               

               
Cow position:
               
chr1:11873547-11873377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
168, 39
               

               
Conread position:
               
38-215
               

               
Cow position:
               
chr1:55357476-55357303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
86, 39
               

               
Conread position:
               
38-216
               

               
Cow position:
               
chr1:46940052-46939874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
39, 34
               

               
Conread position:
               
38-217
               

               
Cow position:
               
chr1:3340747-3340918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
38, 110
               

               
Conread position:
               
38-217
               

               
Cow position:
               
chr1:4293872-4294041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
38-217
               

               
Cow position:
               
chr1:45535511-45535691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
38-217
               

               
Cow position:
               
chr1:61725303-61725130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
39, 91
               

               
Conread position:
               
38-217
               

               
Cow position:
               
chr1:64421140-64421315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
39, 110
               

               
Conread position:
               
38-217
               

               
Cow position:
               
chr1:71045564-71045739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
38-217
               

               
Cow position:
               
chr1:81470938-81471117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
43, 167
               

               
Conread position:
               
38-217
               

               
Cow position:
               
chr1:82443647-82443470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-217
               

               
Cow position:
               
chr1:87216272-87216445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
170, 13
               

               
Conread position:
               
38-220
               

               
Cow position:
               
chr1:51818751-51818929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
84, 40
               

               
Conread position:
               
38-220
               

               
Cow position:
               
chr1:73761542-73761371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
38-222
               

               
Cow position:
               
chr1:41004558-41004371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
38-222
               

               
Cow position:
               
chr1:98562969-98563151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
39, 113
               

               
Conread position:
               
38-225
               

               
Cow position:
               
chr1:19545290-19545106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
180, 42
               

               
Conread position:
               
38-226
               

               
Cow position:
               
chr1:20287924-20288111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
43, 166
               

               
Conread position:
               
38-227
               

               
Cow position:
               
chr1:12596092-12595911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
38-235
               

               
Cow position:
               
chr1:8532406-8532211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
39, 54
               

               
Conread position:
               
38-235
               

               
Cow position:
               
chr1:91039367-91039170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
39, 114
               

               
Conread position:
               
38-242
               

               
Cow position:
               
chr1:100512405-100512611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
85, 39
               

               
Conread position:
               
38-245
               

               
Cow position:
               
chr1:20799682-20799902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
22, 113
               

               
Conread position:
               
38-253
               

               
Cow position:
               
chr1:22448777-22448569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 39
               

               
Conread position:
               
38-253
               

               
Cow position:
               
chr1:95050290-95050075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-254
               

               
Cow position:
               
chr1:50679476-50679268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-256
               

               
Cow position:
               
chr1:29671714-29671506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
53, 104
               

               
Conread position:
               
38-256
               

               
Cow position:
               
chr1:94404026-94404229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
38-258
               

               
Cow position:
               
chr1:24413249-24413473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
45, 118
               

               
Conread position:
               
38-309
               

               
Cow position:
               
chr1:80899917-80900190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
40, 165
               

               
Conread position:
               
38-311
               

               
Cow position:
               
chr1:51654220-51654496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-314
               

               
Cow position:
               
chr1:44769302-44769034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
39, 54
               

               
Conread position:
               
38-318
               

               
Cow position:
               
chr1:85596754-85597017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
85, 20
               

               
Conread position:
               
38-323
               

               
Cow position:
               
chr1:6788480-6788199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
39, 169
               

               
Conread position:
               
38-325
               

               
Cow position:
               
chr1:4374529-4374251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
91, 39
               

               
Conread position:
               
38-325
               

               
Cow position:
               
chr1:71257673-71257380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
40, 65
               

               
Conread position:
               
38-328
               

               
Cow position:
               
chr1:91800796-91800511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
39, 133
               

               
Conread position:
               
38-332
               

               
Cow position:
               
chr1:20384811-20384530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
38-332
               

               
Cow position:
               
chr1:81563542-81563838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 169
               

               
Conread position:
               
38-344
               

               
Cow position:
               
chr1:45289064-45288766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
81, 42
               

               
Conread position:
               
38-346
               

               
Cow position:
               
chr1:75141816-75142104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
80, 22
               

               
Conread position:
               
38-349
               

               
Cow position:
               
chr1:7350348-7350658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
40, 153
               

               
Conread position:
               
38-349
               

               
Cow position:
               
chr1:81355894-81355592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
219, 41
               

               
Conread position:
               
38-350
               

               
Cow position:
               
chr1:64251242-64250941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
217, 53
               

               
Conread position:
               
38-356
               

               
Cow position:
               
chr1:100705942-100706243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-361
               

               
Cow position:
               
chr1:100393355-100393039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
40, 110
               

               
Conread position:
               
38-362
               

               
Cow position:
               
chr1:42360076-42360411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
32, 138
               

               
Conread position:
               
38-363
               

               
Cow position:
               
chr1:8349501-8349200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-363
               

               
Cow position:
               
chr1:54478134-54478453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
202, 39
               

               
Conread position:
               
38-363
               

               
Cow position:
               
chr1:98594380-98594689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
105, 40
               

               
Conread position:
               
38-366
               

               
Cow position:
               
chr1:3790246-3789943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
214, 49
               

               
Conread position:
               
38-366
               

               
Cow position:
               
chr1:36931969-36932282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
225, 39
               

               
Conread position:
               
38-366
               

               
Cow position:
               
chr1:39418309-39417988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
91, 29
               

               
Conread position:
               
38-366
               

               
Cow position:
               
chr1:56229064-56229366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
230, 39
               

               
Conread position:
               
38-366
               

               
Cow position:
               
chr1:95176745-95177064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
39, 124
               

               
Conread position:
               
38-367
               

               
Cow position:
               
chr1:4027671-4027991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
39, 78
               

               
Conread position:
               
38-371
               

               
Cow position:
               
chr1:93043835-93044149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
39, 100
               

               
Conread position:
               
38-371
               

               
Cow position:
               
chr1:100800165-100800483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
39, 56
               

               
Conread position:
               
38-373
               

               
Cow position:
               
chr1:80336437-80336114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
39, 100
               

               
Conread position:
               
38-373
               

               
Cow position:
               
chr1:80988156-80988480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-373
               

               
Cow position:
               
chr1:84255564-84255901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
40, 172
               

               
Conread position:
               
38-377
               

               
Cow position:
               
chr1:98461100-98461422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
40, 77
               

               
Conread position:
               
38-378
               

               
Cow position:
               
chr1:52753356-52753021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-378
               

               
Cow position:
               
chr1:56711812-56711464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
81, 24
               

               
Conread position:
               
38-379
               

               
Cow position:
               
chr1:48731019-48730693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
39, 79
               

               
Conread position:
               
38-381
               

               
Cow position:
               
chr1:52994833-52995168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 97
               

               
Conread position:
               
38-381
               

               
Cow position:
               
chr1:53308583-53308252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
55, 37
               

               
Conread position:
               
38-381
               

               
Cow position:
               
chr1:53671940-53671608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
40, 89
               

               
Conread position:
               
38-381
               

               
Cow position:
               
chr1:69264631-69264951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
91, 28
               

               
Conread position:
               
38-381
               

               
Cow position:
               
chr1:71253745-71253414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
53, 42
               

               
Conread position:
               
38-384
               

               
Cow position:
               
chr1:36874824-36875171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
170, 39
               

               
Conread position:
               
38-385
               

               
Cow position:
               
chr1:39069141-39068812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
248, 31
               

               
Conread position:
               
38-387
               

               
Cow position:
               
chr1:85361665-85361999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
49, 125
               

               
Conread position:
               
38-388
               

               
Cow position:
               
chr1:90868626-90868298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
219, 16
               

               
Conread position:
               
38-390
               

               
Cow position:
               
chr1:33331279-33330946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
38, 98
               

               
Conread position:
               
38-391
               

               
Cow position:
               
chr1:89342183-89341832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
165, 40
               

               
Conread position:
               
38-392
               

               
Cow position:
               
chr1:94212043-94212377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
81, 38
               

               
Conread position:
               
38-395
               

               
Cow position:
               
chr1:40531300-40530948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 31
               

               
Conread position:
               
38-396
               

               
Cow position:
               
chr1:28176809-28177163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
39, 168
               

               
Conread position:
               
38-399
               

               
Cow position:
               
chr1:20002426-20002071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
88, 39
               

               
Conread position:
               
38-402
               

               
Cow position:
               
chr1:11914068-11913714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-405
               

               
Cow position:
               
chr1:7186597-7186953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
33, 144
               

               
Conread position:
               
38-405
               

               
Cow position:
               
chr1:60032789-60032436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
84, 39
               

               
Conread position:
               
38-409
               

               
Cow position:
               
chr1:53520716-53521081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
53, 38
               

               
Conread position:
               
38-409
               

               
Cow position:
               
chr1:97611843-97611497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
89, 39
               

               
Conread position:
               
38-410
               

               
Cow position:
               
chr1:22836212-22836572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-413
               

               
Cow position:
               
chr1:43358205-43357835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-415
               

               
Cow position:
               
chr1:72035120-72034753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 169
               

               
Conread position:
               
38-415
               

               
Cow position:
               
chr1:96713004-96712632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-416
               

               
Cow position:
               
chr1:91816964-91816594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 109
               

               
Conread position:
               
38-417
               

               
Cow position:
               
chr1:4401957-4402323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
81, 7
               

               
Conread position:
               
38-417
               

               
Cow position:
               
chr1:13637861-13637490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
90, 38
               

               
Conread position:
               
38-417
               

               
Cow position:
               
chr1:26179005-26178633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
39, 100
               

               
Conread position:
               
38-417
               

               
Cow position:
               
chr1:37707159-37706791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
40, 109
               

               
Conread position:
               
38-417
               

               
Cow position:
               
chr1:52329719-52329346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-418
               

               
Cow position:
               
chr1:15333687-15334064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 229
               

               
Conread position:
               
38-418
               

               
Cow position:
               
chr1:38278236-38277850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 167
               

               
Conread position:
               
38-418
               

               
Cow position:
               
chr1:42968508-42968140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
39, 110
               

               
Conread position:
               
38-419
               

               
Cow position:
               
chr1:52496591-52496950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-420
               

               
Cow position:
               
chr1:1956518-1956156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
231, 39
               

               
Conread position:
               
38-420
               

               
Cow position:
               
chr1:10942282-10941920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-420
               

               
Cow position:
               
chr1:10964104-10964466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-420
               

               
Cow position:
               
chr1:46693847-46693473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
39, 123
               

               
Conread position:
               
38-420
               

               
Cow position:
               
chr1:56225285-56225649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 39
               

               
Conread position:
               
38-420
               

               
Cow position:
               
chr1:63138648-63139022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
81, 45
               

               
Conread position:
               
38-421
               

               
Cow position:
               
chr1:13413836-13414204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
37, 73
               

               
Conread position:
               
38-422
               

               
Cow position:
               
chr1:6867671-6867282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
39, 128
               

               
Conread position:
               
38-422
               

               
Cow position:
               
chr1:72103656-72104034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-422
               

               
Cow position:
               
chr1:73584592-73584225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
312, 10
               

               
Conread position:
               
38-422
               

               
Cow position:
               
chr1:79590910-79591284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
49, 162
               

               
Conread position:
               
38-422
               

               
Cow position:
               
chr1:84906258-84905880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-422
               

               
Cow position:
               
chr1:90864490-90864111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
49, 162
               

               
Conread position:
               
38-423
               

               
Cow position:
               
chr1:1053398-1053763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
86, 41
               

               
Conread position:
               
38-424
               

               
Cow position:
               
chr1:101634511-101634881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
40, 29
               

               
Conread position:
               
38-425
               

               
Cow position:
               
chr1:71079147-71078779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 42
               

               
Conread position:
               
38-425
               

               
Cow position:
               
chr1:81613195-81613578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
40, 150
               

               
Conread position:
               
38-425
               

               
Cow position:
               
chr1:92963208-92963560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
235, 41
               

               
Conread position:
               
38-425
               

               
Cow position:
               
chr1:93528500-93528877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
39, 170
               

               
Conread position:
               
38-425
               

               
Cow position:
               
chr1:99642560-99642186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
25, 44
               

               
Conread position:
               
38-430
               

               
Cow position:
               
chr1:45555173-45555553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 54
               

               
Conread position:
               
38-430
               

               
Cow position:
               
chr1:74956214-74955844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 42
               

               
Conread position:
               
38-430
               

               
Cow position:
               
chr1:99609175-99609555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 53
               

               
Conread position:
               
38-431
               

               
Cow position:
               
chr1:18937024-18936648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 138
               

               
Conread position:
               
38-431
               

               
Cow position:
               
chr1:21955564-21955183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
84, 47
               

               
Conread position:
               
38-431
               

               
Cow position:
               
chr1:74084382-74083999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 9
               

               
Conread position:
               
38-431
               

               
Cow position:
               
chr1:88618403-88618796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
39, 57
               

               
Conread position:
               
38-431
               

               
Cow position:
               
chr1:90976273-90975887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
80, 37
               

               
Conread position:
               
38-431
               

               
Cow position:
               
chr1:98030724-98031107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
42, 82
               

               
Conread position:
               
38-431
               

               
Cow position:
               
chr1:102266457-102266081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
81, 35
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr1:10632863-10633230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
219, 39
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr1:12222795-12222414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
84, 39
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr1:26896015-26895622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 39
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr1:43389238-43388864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr1:48105624-48105235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
246, 51
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr1:48580941-48581318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
48, 66
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr1:64804298-64803907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 145
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr1:74929910-74929518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
39, 139
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr1:79165281-79164892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
24, 168
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr1:82936772-82936415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
202, 39
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr1:86113603-86113206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 17
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr1:89510123-89509738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
40, 105
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr1:95499686-95499306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
39, 76
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr1:96964130-96964509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 42
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr1:100400392-100400014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
81, 38
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr1:101713927-101714306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
43, 108
               

               
Conread position:
               
38-434
               

               
Cow position:
               
chr1:874453-874855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 10
               

               
Conread position:
               
38-435
               

               
Cow position:
               
chr1:31348631-31348243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-438
               

               
Cow position:
               
chr1:78809693-78810079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
238, 39
               

               
Conread position:
               
38-439
               

               
Cow position:
               
chr1:34856819-34856428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 28
               

               
Conread position:
               
38-440
               

               
Cow position:
               
chr1:6941275-6941664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 39
               

               
Conread position:
               
38-440
               

               
Cow position:
               
chr1:6958688-6959077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 39
               

               
Conread position:
               
38-445
               

               
Cow position:
               
chr1:49433455-49433057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
39, 59
               

               
Conread position:
               
38-447
               

               
Cow position:
               
chr1:70297081-70297488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
21, 52
               

               
Conread position:
               
38-450
               

               
Cow position:
               
chr1:43872525-43872100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 211
               

               
Conread position:
               
38-451
               

               
Cow position:
               
chr1:25734663-25735078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
35, 168
               

               
Conread position:
               
38-451
               

               
Cow position:
               
chr1:29627105-29626701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
48, 56
               

               
Conread position:
               
38-451
               

               
Cow position:
               
chr1:34686004-34686376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
38-451
               

               
Cow position:
               
chr1:51394234-51394623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
153, 39
               

               
Conread position:
               
38-451
               

               
Cow position:
               
chr1:68862845-68863224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
111, 28
               

               
Conread position:
               
38-451
               

               
Cow position:
               
chr1:81228530-81228129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 53
               

               
Conread position:
               
38-451
               

               
Cow position:
               
chr1:91066339-91065948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
234, 28
               

               
Conread position:
               
38-451
               

               
Cow position:
               
chr1:95100771-95101156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
54, 39
               

               
Conread position:
               
38-456
               

               
Cow position:
               
chr1:66138126-66138532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
67, 60
               

               
Conread position:
               
38-458
               

               
Cow position:
               
chr1:28563759-28563344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 40
               

               
Conread position:
               
38-458
               

               
Cow position:
               
chr1:84812127-84811724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
49, 81
               

               
Conread position:
               
38-461
               

               
Cow position:
               
chr1:61884725-61885130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 110
               

               
Conread position:
               
38-462
               

               
Cow position:
               
chr1:31934323-31934720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
39, 20
               

               
Conread position:
               
38-462
               

               
Cow position:
               
chr1:43505333-43505741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
222, 26
               

               
Conread position:
               
38-462
               

               
Cow position:
               
chr1:93499432-93499839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
39, 119
               

               
Conread position:
               
38-462
               

               
Cow position:
               
chr1:102105544-102105952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
221, 37
               

               
Conread position:
               
38-463
               

               
Cow position:
               
chr1:53374245-53374655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-463
               

               
Cow position:
               
chr1:102784770-102785162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
38, 54
               

               
Conread position:
               
38-464
               

               
Cow position:
               
chr1:68817989-68817584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
38-464
               

               
Cow position:
               
chr1:81569225-81568809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
40, 153
               

               
Conread position:
               
38-465
               

               
Cow position:
               
chr1:1877837-1878242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
39, 54
               

               
Conread position:
               
38-467
               

               
Cow position:
               
chr1:69678516-69678102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
40, 110
               

               
Conread position:
               
38-469
               

               
Cow position:
               
chr1:77620360-77620780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
39, 16
               

               
Conread position:
               
38-470
               

               
Cow position:
               
chr1:5423925-5423510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
226, 40
               

               
Conread position:
               
38-470
               

               
Cow position:
               
chr1:24542772-24542340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 53
               

               
Conread position:
               
38-470
               

               
Cow position:
               
chr1:44506777-44507192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-471
               

               
Cow position:
               
chr1:22826979-22827375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
219, 40
               

               
Conread position:
               
38-472
               

               
Cow position:
               
chr1:21954408-21954003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
171, 39
               

               
Conread position:
               
38-476
               

               
Cow position:
               
chr1:6103107-6102667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
40, 199
               

               
Conread position:
               
38-476
               

               
Cow position:
               
chr1:82337975-82337543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 178
               

               
Conread position:
               
38-476
               

               
Cow position:
               
chr1:94226738-94226317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
209, 40
               

               
Conread position:
               
38-477
               

               
Cow position:
               
chr1:197198-196777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 121
               

               
Conread position:
               
38-481
               

               
Cow position:
               
chr1:73546097-73545670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
40, 127
               

               
Conread position:
               
38-482
               

               
Cow position:
               
chr1:26201030-26201475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 39
               

               
Conread position:
               
38-488
               

               
Cow position:
               
chr1:6305059-6304631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
39, 169
               

               
Conread position:
               
38-489
               

               
Cow position:
               
chr1:68276216-68276661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
39, 164
               

               
Conread position:
               
38-493
               

               
Cow position:
               
chr1:24133246-24132818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 29
               

               
Conread position:
               
38-498
               

               
Cow position:
               
chr1:34159641-34160083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
81, 150
               

               
Conread position:
               
38-499
               

               
Cow position:
               
chr1:635001-635450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
39-187
               

               
Cow position:
               
chr1:36613464-36613319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
39-189
               

               
Cow position:
               
chr1:44136651-44136508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
38, 53
               

               
Conread position:
               
39-196
               

               
Cow position:
               
chr1:57396116-57395965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
82, 38
               

               
Conread position:
               
39-197
               

               
Cow position:
               
chr1:81363802-81363956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
87, 28
               

               
Conread position:
               
39-200
               

               
Cow position:
               
chr1:24655770-24655930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
80, 38
               

               
Conread position:
               
39-202
               

               
Cow position:
               
chr1:49839318-49839476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
39-202
               

               
Cow position:
               
chr1:55163733-55163886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
39-209
               

               
Cow position:
               
chr1:31341243-31341071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
39-217
               

               
Cow position:
               
chr1:57635277-57635446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
39-217
               

               
Cow position:
               
chr1:78783357-78783532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
80, 38
               

               
Conread position:
               
39-223
               

               
Cow position:
               
chr1:99136620-99136439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
39-235
               

               
Cow position:
               
chr1:101007809-101007618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
90, 50
               

               
Conread position:
               
39-244
               

               
Cow position:
               
chr1:77462174-77462368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
194, 32
               

               
Conread position:
               
39-247
               

               
Cow position:
               
chr1:22467741-22467943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
80, 37
               

               
Conread position:
               
39-256
               

               
Cow position:
               
chr1:71946560-71946355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
39-273
               

               
Cow position:
               
chr1:76222880-76222656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
80, 37
               

               
Conread position:
               
39-314
               

               
Cow position:
               
chr1:102647458-102647198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
86, 30
               

               
Conread position:
               
39-319
               

               
Cow position:
               
chr1:90640835-90641108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
38, 171
               

               
Conread position:
               
39-328
               

               
Cow position:
               
chr1:96478506-96478789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
80, 40
               

               
Conread position:
               
39-350
               

               
Cow position:
               
chr1:42874136-42873839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
168, 39
               

               
Conread position:
               
39-356
               

               
Cow position:
               
chr1:44125829-44125520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
183, 33
               

               
Conread position:
               
39-356
               

               
Cow position:
               
chr1:85028770-85029071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
218, 39
               

               
Conread position:
               
39-375
               

               
Cow position:
               
chr1:81913341-81913021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
37, 99
               

               
Conread position:
               
39-402
               

               
Cow position:
               
chr1:52039447-52039793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 38
               

               
Conread position:
               
39-417
               

               
Cow position:
               
chr1:63390963-63390589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
80, 39
               

               
Conread position:
               
39-422
               

               
Cow position:
               
chr1:31765586-31765190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
39-425
               

               
Cow position:
               
chr1:45019993-45019623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
13, 34
               

               
Conread position:
               
39-430
               

               
Cow position:
               
chr1:71227887-71228283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 192
               

               
Conread position:
               
39-430
               

               
Cow position:
               
chr1:102349947-102349571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
21, 49
               

               
Conread position:
               
39-431
               

               
Cow position:
               
chr1:56477405-56477774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
201, 32
               

               
Conread position:
               
39-431
               

               
Cow position:
               
chr1:94875868-94875476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
39, 60
               

               
Conread position:
               
39-432
               

               
Cow position:
               
chr1:16767274-16766896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
38, 90
               

               
Conread position:
               
39-432
               

               
Cow position:
               
chr1:21577615-21578000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
71, 38
               

               
Conread position:
               
39-432
               

               
Cow position:
               
chr1:36880089-36880477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
53, 46
               

               
Conread position:
               
39-432
               

               
Cow position:
               
chr1:92369539-92369941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
39, 168
               

               
Conread position:
               
39-432
               

               
Cow position:
               
chr1:100551781-100552156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
90, 38
               

               
Conread position:
               
39-452
               

               
Cow position:
               
chr1:8433-8829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
90, 47
               

               
Conread position:
               
39-455
               

               
Cow position:
               
chr1:87072515-87072910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
201, 38
               

               
Conread position:
               
39-458
               

               
Cow position:
               
chr1:12464853-12464453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 39
               

               
Conread position:
               
39-458
               

               
Cow position:
               
chr1:22728858-22729267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 166
               

               
Conread position:
               
39-458
               

               
Cow position:
               
chr1:52435081-52435487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
80, 38
               

               
Conread position:
               
39-463
               

               
Cow position:
               
chr1:68845675-68845283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 38
               

               
Conread position:
               
39-465
               

               
Cow position:
               
chr1:41181655-41182058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
65, 25
               

               
Conread position:
               
39-470
               

               
Cow position:
               
chr1:61391982-61391570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
38, 168
               

               
Conread position:
               
39-470
               

               
Cow position:
               
chr1:89076826-89076399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
42, 162
               

               
Conread position:
               
39-478
               

               
Cow position:
               
chr1:11226435-11225994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
38, 110
               

               
Conread position:
               
40-168
               

               
Cow position:
               
chr1:32631278-32631404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
79, 31
               

               
Conread position:
               
40-202
               

               
Cow position:
               
chr1:3752130-3751968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
79, 37
               

               
Conread position:
               
40-202
               

               
Cow position:
               
chr1:71818650-71818487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
40-202
               

               
Cow position:
               
chr1:91142345-91142185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
37, 57
               

               
Conread position:
               
40-211
               

               
Cow position:
               
chr1:53613381-53613217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
80, 22
               

               
Conread position:
               
40-217
               

               
Cow position:
               
chr1:43703226-43703393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
40-221
               

               
Cow position:
               
chr1:81859420-81859238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
37, 117
               

               
Conread position:
               
40-223
               

               
Cow position:
               
chr1:78794924-78794753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
71, 35
               

               
Conread position:
               
40-239
               

               
Cow position:
               
chr1:99095175-99095369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
47, 14
               

               
Conread position:
               
40-251
               

               
Cow position:
               
chr1:666172-666376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
69, 35
               

               
Conread position:
               
40-305
               

               
Cow position:
               
chr1:1991613-1991352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
38, 111
               

               
Conread position:
               
40-308
               

               
Cow position:
               
chr1:101867167-101867420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
235, 35
               

               
Conread position:
               
40-318
               

               
Cow position:
               
chr1:56634910-56635177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
37, 52
               

               
Conread position:
               
40-349
               

               
Cow position:
               
chr1:26702396-26702097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
68, 37
               

               
Conread position:
               
40-349
               

               
Cow position:
               
chr1:100450373-100450066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
59, 37
               

               
Conread position:
               
40-354
               

               
Cow position:
               
chr1:37309699-37309404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
79, 37
               

               
Conread position:
               
40-362
               

               
Cow position:
               
chr1:60707215-60707526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
84, 110
               

               
Conread position:
               
40-362
               

               
Cow position:
               
chr1:83583126-83582810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
37, 79
               

               
Conread position:
               
40-380
               

               
Cow position:
               
chr1:89742200-89741852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
21, 155
               

               
Conread position:
               
40-381
               

               
Cow position:
               
chr1:21460679-21461011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
79, 37
               

               
Conread position:
               
40-381
               

               
Cow position:
               
chr1:57900929-57900582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
19, 39
               

               
Conread position:
               
40-381
               

               
Cow position:
               
chr1:98360597-98360262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
38, 142
               

               
Conread position:
               
40-382
               

               
Cow position:
               
chr1:82884578-82884252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
217, 37
               

               
Conread position:
               
40-385
               

               
Cow position:
               
chr1:24729028-24728694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
37, 13
               

               
Conread position:
               
40-409
               

               
Cow position:
               
chr1:19885196-19885550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
37, 79
               

               
Conread position:
               
40-409
               

               
Cow position:
               
chr1:95056867-95057210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
260, 37
               

               
Conread position:
               
40-415
               

               
Cow position:
               
chr1:84282876-84283249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
38, 165
               

               
Conread position:
               
40-417
               

               
Cow position:
               
chr1:1499889-1499515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
49, 35
               

               
Conread position:
               
40-420
               

               
Cow position:
               
chr1:70422112-70422485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
38, 160
               

               
Conread position:
               
40-422
               

               
Cow position:
               
chr1:57880981-57880601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
37, 160
               

               
Conread position:
               
40-422
               

               
Cow position:
               
chr1:60986783-60987172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
46, 180
               

               
Conread position:
               
40-422
               

               
Cow position:
               
chr1:68619126-68618755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 174
               

               
Conread position:
               
40-425
               

               
Cow position:
               
chr1:3323670-3324057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
38, 23
               

               
Conread position:
               
40-425
               

               
Cow position:
               
chr1:11853878-11853503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 168
               

               
Conread position:
               
40-430
               

               
Cow position:
               
chr1:11728989-11729359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
37, 165
               

               
Conread position:
               
40-432
               

               
Cow position:
               
chr1:15547280-15547655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
79, 37
               

               
Conread position:
               
40-432
               

               
Cow position:
               
chr1:21787138-21787514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
37, 167
               

               
Conread position:
               
40-432
               

               
Cow position:
               
chr1:33207063-33206684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 137
               

               
Conread position:
               
40-432
               

               
Cow position:
               
chr1:33719925-33720294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 142
               

               
Conread position:
               
40-432
               

               
Cow position:
               
chr1:53622775-53623144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
79, 27
               

               
Conread position:
               
40-462
               

               
Cow position:
               
chr1:29935570-29935175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
35, 79
               

               
Conread position:
               
40-463
               

               
Cow position:
               
chr1:21508200-21508620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
78, 37
               

               
Conread position:
               
40-464
               

               
Cow position:
               
chr1:54258379-54258789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 29
               

               
Conread position:
               
40-469
               

               
Cow position:
               
chr1:63434998-63434575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
37, 167
               

               
Conread position:
               
40-470
               

               
Cow position:
               
chr1:70538415-70538829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 165
               

               
Conread position:
               
40-475
               

               
Cow position:
               
chr1:78857511-78857094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
38, 29
               

               
Conread position:
               
40-485
               

               
Cow position:
               
chr1:54156929-54156496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
37, 27
               

               
Conread position:
               
40-510
               

               
Cow position:
               
chr1:47658165-47658614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
200, 43
               

               
Conread position:
               
41-201
               

               
Cow position:
               
chr1:19465875-19466026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
41-202
               

               
Cow position:
               
chr1:61742651-61742489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
41-300
               

               
Cow position:
               
chr1:26729540-26729779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
228, 36
               

               
Conread position:
               
41-423
               

               
Cow position:
               
chr1:68217546-68217182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
42-170
               

               
Cow position:
               
chr1:55686407-55686278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
42-194
               

               
Cow position:
               
chr1:67821396-67821248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
42-199
               

               
Cow position:
               
chr1:89082921-89083078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
42-252
               

               
Cow position:
               
chr1:5873158-5872956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
83, 32
               

               
Conread position:
               
42-317
               

               
Cow position:
               
chr1:89497779-89498031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
215, 35
               

               
Conread position:
               
42-395
               

               
Cow position:
               
chr1:74822265-74822607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
36, 103
               

               
Conread position:
               
42-411
               

               
Cow position:
               
chr1:41696868-41697222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 163
               

               
Conread position:
               
42-415
               

               
Cow position:
               
chr1:71295501-71295126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
36, 151
               

               
Conread position:
               
42-415
               

               
Cow position:
               
chr1:75744674-75745036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 35
               

               
Conread position:
               
42-417
               

               
Cow position:
               
chr1:98551526-98551913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 163
               

               
Conread position:
               
42-425
               

               
Cow position:
               
chr1:83072257-83072625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 29
               

               
Conread position:
               
42-425
               

               
Cow position:
               
chr1:85162734-85162345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
34, 106
               

               
Conread position:
               
42-430
               

               
Cow position:
               
chr1:57575954-57575576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
40, 25
               

               
Conread position:
               
42-432
               

               
Cow position:
               
chr1:25383476-25383859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 35
               

               
Conread position:
               
42-432
               

               
Cow position:
               
chr1:55705440-55705057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
36, 164
               

               
Conread position:
               
42-432
               

               
Cow position:
               
chr1:61564606-61564971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
44, 163
               

               
Conread position:
               
42-434
               

               
Cow position:
               
chr1:34771690-34771307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
50, 25
               

               
Conread position:
               
42-451
               

               
Cow position:
               
chr1:6077708-6078112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
39, 153
               

               
Conread position:
               
42-451
               

               
Cow position:
               
chr1:61012123-61012511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
37, 85
               

               
Conread position:
               
42-455
               

               
Cow position:
               
chr1:78810849-78811251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 131
               

               
Conread position:
               
42-463
               

               
Cow position:
               
chr1:16962200-16961776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
35, 157
               

               
Conread position:
               
42-485
               

               
Cow position:
               
chr1:68854988-68855410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
90, 27
               

               
Conread position:
               
43-332
               

               
Cow position:
               
chr1:74947312-74947025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
34, 161
               

               
Conread position:
               
43-422
               

               
Cow position:
               
chr1:19568665-19569035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
35, 14
               

               
Conread position:
               
43-432
               

               
Cow position:
               
chr1:43352842-43352463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 34
               

               
Conread position:
               
45-199
               

               
Cow position:
               
chr1:3243755-3243907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
79, 32
               

               
Conread position:
               
45-217
               

               
Cow position:
               
chr1:82504783-82504960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
32, 166
               

               
Conread position:
               
45-222
               

               
Cow position:
               
chr1:45673527-45673699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
77, 32
               

               
Conread position:
               
45-282
               

               
Cow position:
               
chr1:99039536-99039316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
45-349
               

               
Cow position:
               
chr1:88652447-88652746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
212, 32
               

               
Conread position:
               
45-355
               

               
Cow position:
               
chr1:53495280-53495577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
31, 145
               

               
Conread position:
               
45-363
               

               
Cow position:
               
chr1:4290975-4291288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 32
               

               
Conread position:
               
45-372
               

               
Cow position:
               
chr1:73960518-73960833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
29, 155
               

               
Conread position:
               
45-381
               

               
Cow position:
               
chr1:47233658-47233336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
212, 24
               

               
Conread position:
               
45-388
               

               
Cow position:
               
chr1:68253408-68253740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
220, 40
               

               
Conread position:
               
45-410
               

               
Cow position:
               
chr1:84910814-84910473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
32, 48
               

               
Conread position:
               
45-417
               

               
Cow position:
               
chr1:86578765-86579147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
127, 35
               

               
Conread position:
               
45-425
               

               
Cow position:
               
chr1:54207002-54206636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
237, 32
               

               
Conread position:
               
45-432
               

               
Cow position:
               
chr1:14379714-14379360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
45-432
               

               
Cow position:
               
chr1:51445696-51446072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 32
               

               
Conread position:
               
45-451
               

               
Cow position:
               
chr1:61005749-61005352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
33, 149
               

               
Conread position:
               
45-451
               

               
Cow position:
               
chr1:79844285-79844684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
111, 33
               

               
Conread position:
               
45-463
               

               
Cow position:
               
chr1:61742150-61741747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 19
               

               
Conread position:
               
45-474
               

               
Cow position:
               
chr1:68763865-68763453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
286, 32
               

               
Conread position:
               
45-475
               

               
Cow position:
               
chr1:1981293-1980875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
96, 27
               

               
Conread position:
               
45-477
               

               
Cow position:
               
chr1:7442801-7443213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
32, 46
               

               
Conread position:
               
46-202
               

               
Cow position:
               
chr1:24445811-24445657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
32, 23
               

               
Conread position:
               
46-332
               

               
Cow position:
               
chr1:20204844-20205120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
41, 32
               

               
Conread position:
               
46-431
               

               
Cow position:
               
chr1:70434817-70435175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
32, 124
               

               
Conread position:
               
46-462
               

               
Cow position:
               
chr1:5597383-5596991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
227, 98
               

               
Conread position:
               
47-217
               

               
Cow position:
               
chr1:1801958-1802125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
72, 31
               

               
Conread position:
               
47-462
               

               
Cow position:
               
chr1:97231782-97232192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
72, 21
               

               
Conread position:
               
48-415
               

               
Cow position:
               
chr1:31608079-31607713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 45
               

               
Conread position:
               
48-434
               

               
Cow position:
               
chr1:89388151-89388535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
30, 61
               

               
Conread position:
               
48-437
               

               
Cow position:
               
chr1:65905188-65904800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
39, 29
               

               
Conread position:
               
49-217
               

               
Cow position:
               
chr1:3244674-3244834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
150, 28
               

               
Conread position:
               
49-462
               

               
Cow position:
               
chr1:20667921-20667534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
70, 28
               

               
Conread position:
               
50-202
               

               
Cow position:
               
chr1:69540120-69540270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
16, 29
               

               
Conread position:
               
50-319
               

               
Cow position:
               
chr1:101551279-101551543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
31, 83
               

               
Conread position:
               
51-214
               

               
Cow position:
               
chr1:32596276-32596441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
68, 26
               

               
Conread position:
               
51-313
               

               
Cow position:
               
chr1:95178773-95179028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 42
               

               
Conread position:
               
51-380
               

               
Cow position:
               
chr1:57420907-57420595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
68, 16
               

               
Conread position:
               
51-432
               

               
Cow position:
               
chr1:98453405-98453785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
12, 27
               

               
Conread position:
               
52-405
               

               
Cow position:
               
chr1:51769907-51770258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
26, 156
               

               
Conread position:
               
52-409
               

               
Cow position:
               
chr1:69695179-69694831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
67, 25
               

               
Conread position:
               
53-301
               

               
Cow position:
               
chr1:60907195-60907439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
66, 24
               

               
Conread position:
               
53-387
               

               
Cow position:
               
chr1:42545959-42545631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
66, 24
               

               
Conread position:
               
54-366
               

               
Cow position:
               
chr1:91875085-91874790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
24, 33
               

               
Conread position:
               
54-460
               

               
Cow position:
               
chr1:20000926-20000542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
192, 23
               

               
Conread position:
               
54-478
               

               
Cow position:
               
chr1:71119334-71119751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 159
               

               
Conread position:
               
55-458
               

               
Cow position:
               
chr1:23186969-23186588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
64, 24
               

               
Conread position:
               
55-464
               

               
Cow position:
               
chr1:484639-484240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
76, 22
               

               
Conread position:
               
56-257
               

               
Cow position:
               
chr1:20544119-20544314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
21, 74
               

               
Conread position:
               
56-362
               

               
Cow position:
               
chr1:24876093-24876385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
63, 35
               

               
Conread position:
               
56-380
               

               
Cow position:
               
chr1:77880903-77880594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
181, 21
               

               
Conread position:
               
56-470
               

               
Cow position:
               
chr1:81290338-81290729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
25, 64
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr1:51417605-51417914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
179, 20
               

               
Conread position:
               
57-400
               

               
Cow position:
               
chr1:60281195-60281532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 132
               

               
Conread position:
               
58-350
               

               
Cow position:
               
chr1:12978506-12978793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
22, 139
               

               
Conread position:
               
58-458
               

               
Cow position:
               
chr1:59518750-59519123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
176, 19
               

               
Conread position:
               
59-370
               

               
Cow position:
               
chr1:101632508-101632205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
187, 18
               

               
Conread position:
               
59-432
               

               
Cow position:
               
chr1:89381101-89381464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
17, 135
               

               
Conread position:
               
59-470
               

               
Cow position:
               
chr1:16061188-16060785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 18
               

               
Conread position:
               
59-485
               

               
Cow position:
               
chr1:37322176-37321766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
12, 147
               

               
Conread position:
               
60-416
               

               
Cow position:
               
chr1:70343869-70344221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
18, 138
               

               
Conread position:
               
60-435
               

               
Cow position:
               
chr1:55429128-55428760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 75
               

               
Conread position:
               
62-381
               

               
Cow position:
               
chr1:67305411-67305103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 68
               

               
Conread position:
               
63-375
               

               
Cow position:
               
chr1:97696571-97696879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
14, 147
               

               
Conread position:
               
64-470
               

               
Cow position:
               
chr1:87095399-87094982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 382
               

               
Conread position:
               
65-373
               

               
Cow position:
               
chr1:74927713-74928018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
12, 95
               

               
Conread position:
               
65-439
               

               
Cow position:
               
chr1:24581416-24581763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 85
               

               
Conread position:
               
66-458
               

               
Cow position:
               
chr1:95557870-95558256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
11, 87
               

               
Conread position:
               
66-472
               

               
Cow position:
               
chr1:86110898-86110515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
16, 134
               

               
Conread position:
               
69-200
               

               
Cow position:
               
chr1:3137764-3137898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
69-422
               

               
Cow position:
               
chr1:25386888-25387228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
50, 131
               

               
Conread position:
               
69-432
               

               
Cow position:
               
chr1:38753754-38754107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
8, 131
               

               
Conread position:
               
69-471
               

               
Cow position:
               
chr1:40599880-40600249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
9, 116
               

               
Conread position:
               
70-371
               

               
Cow position:
               
chr1:85647944-85647648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
16, 135
               

               
Conread position:
               
73-482
               

               
Cow position:
               
chr1:42175565-42175963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
13, 124
               

               
Conread position:
               
74-202
               

               
Cow position:
               
chr1:52506710-52506584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
45, 39
               

               
Conread position:
               
74-319
               

               
Cow position:
               
chr1:53425022-53425257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
52, 16
               

               
Conread position:
               
74-470
               

               
Cow position:
               
chr1:76613291-76612902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
14, 104
               

               
Conread position:
               
74-485
               

               
Cow position:
               
chr1:96305133-96304727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 54
               

               
Conread position:
               
75-417
               

               
Cow position:
               
chr1:98413610-98413954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
44, 91
               

               
Conread position:
               
75-425
               

               
Cow position:
               
chr1:72068994-72068648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 18
               

               
Conread position:
               
75-431
               

               
Cow position:
               
chr1:78096780-78097115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
163, 68
               

               
Conread position:
               
80-211
               

               
Cow position:
               
chr1:65909375-65909507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
80-213
               

               
Cow position:
               
chr1:96184167-96184036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
80-278
               

               
Cow position:
               
chr1:51684652-51684844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
51, 11
               

               
Conread position:
               
80-349
               

               
Cow position:
               
chr1:77683205-77683462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
6, 129
               

               
Conread position:
               
80-350
               

               
Cow position:
               
chr1:38401643-38401910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
180, 124
               

               
Conread position:
               
80-367
               

               
Cow position:
               
chr1:14206307-14206026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
48, 68
               

               
Conread position:
               
80-381
               

               
Cow position:
               
chr1:5579908-5580197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
104, 43
               

               
Conread position:
               
80-382
               

               
Cow position:
               
chr1:4032474-4032775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 129
               

               
Conread position:
               
80-390
               

               
Cow position:
               
chr1:41115866-41115567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
160, 124
               

               
Conread position:
               
80-412
               

               
Cow position:
               
chr1:76019842-76019527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
39, 16
               

               
Conread position:
               
80-432
               

               
Cow position:
               
chr1:22192612-22192960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
46, 109
               

               
Conread position:
               
80-432
               

               
Cow position:
               
chr1:72011961-72011632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
46, 126
               

               
Conread position:
               
80-434
               

               
Cow position:
               
chr1:49077494-49077131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
39, 133
               

               
Conread position:
               
80-434
               

               
Cow position:
               
chr1:86682714-86682375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
73, 119
               

               
Conread position:
               
80-460
               

               
Cow position:
               
chr1:76470501-76470871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
39, 127
               

               
Conread position:
               
80-478
               

               
Cow position:
               
chr1:62519206-62519603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 119
               

               
Conread position:
               
81-411
               

               
Cow position:
               
chr1:53458546-53458867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
156, 123
               

               
Conread position:
               
82-363
               

               
Cow position:
               
chr1:23512804-23512536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
193, 83
               

               
Conread position:
               
82-432
               

               
Cow position:
               
chr1:6166092-6166422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
36, 67
               

               
Conread position:
               
82-432
               

               
Cow position:
               
chr1:50931125-50930790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
82-432
               

               
Cow position:
               
chr1:65318426-65318767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 76
               

               
Conread position:
               
82-432
               

               
Cow position:
               
chr1:91811638-91811975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
262, 65
               

               
Conread position:
               
82-441
               

               
Cow position:
               
chr1:100761930-100762273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
211, 37
               

               
Conread position:
               
85-417
               

               
Cow position:
               
chr1:87197681-87197995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
174, 62
               

               
Conread position:
               
85-432
               

               
Cow position:
               
chr1:92997044-92996696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
30, 8
               

               
Conread position:
               
85-458
               

               
Cow position:
               
chr1:91023614-91023251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 111
               

               
Conread position:
               
86-415
               

               
Cow position:
               
chr1:33409773-33409450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
33, 110
               

               
Conread position:
               
86-432
               

               
Cow position:
               
chr1:6228730-6228391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
33, 111
               

               
Conread position:
               
86-472
               

               
Cow position:
               
chr1:70428573-70428967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
33, 22
               

               
Conread position:
               
86-491
               

               
Cow position:
               
chr1:53369933-53370334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
37, 78
               

               
Conread position:
               
87-409
               

               
Cow position:
               
chr1:24534398-24534094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
169, 119
               

               
Conread position:
               
87-409
               

               
Cow position:
               
chr1:53369062-53369371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
32, 11
               

               
Conread position:
               
88-431
               

               
Cow position:
               
chr1:2976138-2975800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
39, 109
               

               
Conread position:
               
89-416
               

               
Cow position:
               
chr1:89785770-89786085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
89-432
               

               
Cow position:
               
chr1:47886631-47886290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 146
               

               
Conread position:
               
92-431
               

               
Cow position:
               
chr1:48444333-48444002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
177, 114
               

               
Conread position:
               
92-432
               

               
Cow position:
               
chr1:97090188-97090507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
140, 57
               

               
Conread position:
               
93-217
               

               
Cow position:
               
chr1:90595693-90595567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
93-230
               

               
Cow position:
               
chr1:73536598-73536737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
93-252
               

               
Cow position:
               
chr1:29901110-29900954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
93-381
               

               
Cow position:
               
chr1:85550216-85549938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
141, 113
               

               
Conread position:
               
93-428
               

               
Cow position:
               
chr1:43311911-43311582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
147, 5
               

               
Conread position:
               
93-432
               

               
Cow position:
               
chr1:43855162-43855479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
10, 114
               

               
Conread position:
               
93-432
               

               
Cow position:
               
chr1:86340611-86340268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
12, 54
               

               
Conread position:
               
93-432
               

               
Cow position:
               
chr1:89448759-89449088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
142, 103
               

               
Conread position:
               
93-456
               

               
Cow position:
               
chr1:76740822-76740462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
26, 118
               

               
Conread position:
               
94-409
               

               
Cow position:
               
chr1:101268146-101267835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
27, 59
               

               
Conread position:
               
94-462
               

               
Cow position:
               
chr1:88913181-88913540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
356, 134
               

               
Conread position:
               
94-473
               

               
Cow position:
               
chr1:64572376-64572742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
179, 105
               

               
Conread position:
               
95-417
               

               
Cow position:
               
chr1:101983289-101982975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
24, 104
               

               
Conread position:
               
96-399
               

               
Cow position:
               
chr1:86073459-86073750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
26, 91
               

               
Conread position:
               
96-451
               

               
Cow position:
               
chr1:64302383-64302045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
198, 110
               

               
Conread position:
               
96-485
               

               
Cow position:
               
chr1:648188-648567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
23, 101
               

               
Conread position:
               
98-349
               

               
Cow position:
               
chr1:89349829-89350075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
159, 95
               

               
Conread position:
               
98-425
               

               
Cow position:
               
chr1:78838665-78838970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
151, 70
               

               
Conread position:
               
99-429
               

               
Cow position:
               
chr1:101715219-101714893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
20, 97
               

               
Conread position:
               
99-432
               

               
Cow position:
               
chr1:17196761-17196435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
180, 11
               

               
Conread position:
               
99-468
               

               
Cow position:
               
chr1:35600429-35600068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
23, 5
               

               
Conread position:
               
102-363
               

               
Cow position:
               
chr1:93810300-93810553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
70, 103
               

               
Conread position:
               
102-431
               

               
Cow position:
               
chr1:47790791-47790479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
149, 35
               

               
Conread position:
               
103-422
               

               
Cow position:
               
chr1:66898626-66898314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
16, 92
               

               
Conread position:
               
104-376
               

               
Cow position:
               
chr1:100569024-100569293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
15, 97
               

               
Conread position:
               
104-379
               

               
Cow position:
               
chr1:5539404-5539136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
15, 56
               

               
Conread position:
               
104-460
               

               
Cow position:
               
chr1:42869063-42868736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
77, 15
               

               
Conread position:
               
104-467
               

               
Cow position:
               
chr1:72105286-72105628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
319, 8
               

               
Conread position:
               
106-432
               

               
Cow position:
               
chr1:4701798-4701481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
16, 101
               

               
Conread position:
               
106-462
               

               
Cow position:
               
chr1:73458219-73457877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
17, 46
               

               
Conread position:
               
110-432
               

               
Cow position:
               
chr1:20104147-20104456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
111-439
               

               
Cow position:
               
chr1:72813492-72813814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 107
               

               
Conread position:
               
112-432
               

               
Cow position:
               
chr1:77986542-77986226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
14, 112
               

               
Conread position:
               
115-373
               

               
Cow position:
               
chr1:7023004-7023255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
157, 63
               

               
Conread position:
               
115-413
               

               
Cow position:
               
chr1:31841867-31841558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
116-432
               

               
Cow position:
               
chr1:635801-635494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
14, 89
               

               
Conread position:
               
117-461
               

               
Cow position:
               
chr1:48605916-48606249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
28, 13
               

               
Conread position:
               
117-463
               

               
Cow position:
               
chr1:22944140-22943806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
317, 78
               

               
Conread position:
               
120-381
               

               
Cow position:
               
chr1:45553355-45553103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
116, 83
               

               
Conread position:
               
120-422
               

               
Cow position:
               
chr1:14309146-14308849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
154, 77
               

               
Conread position:
               
120-425
               

               
Cow position:
               
chr1:31795114-31794823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
120-432
               

               
Cow position:
               
chr1:67585437-67585741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
96, 201
               

               
Conread position:
               
120-432
               

               
Cow position:
               
chr1:98059938-98060249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
138, 83
               

               
Conread position:
               
120-462
               

               
Cow position:
               
chr1:56618762-56618440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
163, 84
               

               
Conread position:
               
120-463
               

               
Cow position:
               
chr1:10716391-10716722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
138, 47
               

               
Conread position:
               
120-473
               

               
Cow position:
               
chr1:5637188-5636839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
9, 108
               

               
Conread position:
               
120-481
               

               
Cow position:
               
chr1:42482092-42482433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
117, 78
               

               
Conread position:
               
121-381
               

               
Cow position:
               
chr1:81580066-81580319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
164, 7
               

               
Conread position:
               
121-432
               

               
Cow position:
               
chr1:47288130-47288434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
133, 88
               

               
Conread position:
               
121-432
               

               
Cow position:
               
chr1:91651470-91651158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
90, 152
               

               
Conread position:
               
123-418
               

               
Cow position:
               
chr1:88397948-88397666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
128-456
               

               
Cow position:
               
chr1:4391386-4391053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
122, 78
               

               
Conread position:
               
129-421
               

               
Cow position:
               
chr1:79660504-79660219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
108, 67
               

               
Conread position:
               
129-470
               

               
Cow position:
               
chr1:10616778-10617121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
120, 75
               

               
Conread position:
               
129-484
               

               
Cow position:
               
chr1:71350825-71350483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
144, 44
               

               
Conread position:
               
130-423
               

               
Cow position:
               
chr1:46030858-46031145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
138, 67
               

               
Conread position:
               
130-425
               

               
Cow position:
               
chr1:22823804-22824092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 17
               

               
Conread position:
               
130-495
               

               
Cow position:
               
chr1:98583662-98583999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
345, 18
               

               
Conread position:
               
133-432
               

               
Cow position:
               
chr1:65103521-65103819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
144, 49
               

               
Conread position:
               
133-461
               

               
Cow position:
               
chr1:37726513-37726199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
107, 23
               

               
Conread position:
               
133-479
               

               
Cow position:
               
chr1:102306243-102305914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
8, 73
               

               
Conread position:
               
134-432
               

               
Cow position:
               
chr1:71666030-71665744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
122, 51
               

               
Conread position:
               
137-465
               

               
Cow position:
               
chr1:627867-628187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
117, 67
               

               
Conread position:
               
137-506
               

               
Cow position:
               
chr1:75250017-75250375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
5, 15
               

               
Conread position:
               
140-363
               

               
Cow position:
               
chr1:82880553-82880768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
143-432
               

               
Cow position:
               
chr1:100474143-100474429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
114, 65
               

               
Conread position:
               
149-422
               

               
Cow position:
               
chr1:53402699-53402964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
150-455
               

               
Cow position:
               
chr1:78066621-78066329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
13, 84
               

               
Conread position:
               
151-381
               

               
Cow position:
               
chr1:95153139-95153364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
46, 59
               

               
Conread position:
               
151-417
               

               
Cow position:
               
chr1:69227530-69227274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
151-462
               

               
Cow position:
               
chr1:38418947-38419251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
7, 25
               

               
Conread position:
               
152-417
               

               
Cow position:
               
chr1:5128364-5128630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
63, 45
               

               
Conread position:
               
152-425
               

               
Cow position:
               
chr1:33913741-33914014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
98, 86
               

               
Conread position:
               
153-402
               

               
Cow position:
               
chr1:61846067-61846312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
202, 44
               

               
Conread position:
               
154-431
               

               
Cow position:
               
chr1:98467730-98467991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
83, 27
               

               
Conread position:
               
155-380
               

               
Cow position:
               
chr1:98575969-98576186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
120, 51
               

               
Conread position:
               
155-381
               

               
Cow position:
               
chr1:68672676-68672460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
111, 51
               

               
Conread position:
               
156-486
               

               
Cow position:
               
chr1:35671466-35671779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
19, 50
               

               
Conread position:
               
159-430
               

               
Cow position:
               
chr1:89158202-89157942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
100, 45
               

               
Conread position:
               
159-432
               

               
Cow position:
               
chr1:6394486-6394747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
205, 38
               

               
Conread position:
               
160-451
               

               
Cow position:
               
chr1:30983562-30983282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
182, 44
               

               
Conread position:
               
161-422
               

               
Cow position:
               
chr1:2971840-2972100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
119, 36
               

               
Conread position:
               
162-432
               

               
Cow position:
               
chr1:45223510-45223766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
110, 42
               

               
Conread position:
               
166-432
               

               
Cow position:
               
chr1:95072264-95072533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
91, 32
               

               
Conread position:
               
167-422
               

               
Cow position:
               
chr1:51609309-51609558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
168-470
               

               
Cow position:
               
chr1:81390853-81391149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
71, 38
               

               
Conread position:
               
170-422
               

               
Cow position:
               
chr1:151001-150743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
45, 81
               

               
Conread position:
               
171-432
               

               
Cow position:
               
chr1:30862472-30862222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
200, 33
               

               
Conread position:
               
174-432
               

               
Cow position:
               
chr1:77739658-77739914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
19, 36
               

               
Conread position:
               
174-432
               

               
Cow position:
               
chr1:79718743-79718998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
40, 72
               

               
Conread position:
               
185-509
               

               
Cow position:
               
chr1:60044939-60045262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
175, 39
               

               
Conread position:
               
192-464
               

               
Cow position:
               
chr1:8287678-8287409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
49, 34
               

               
Conread position:
               
196-432
               

               
Cow position:
               
chr1:81481429-81481195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
29, 172
               

               
Conread position:
               
205-432
               

               
Cow position:
               
chr1:852133-852363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
17, 80
               

               
Conread position:
               
207-461
               

               
Cow position:
               
chr1:6731148-6731394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
52, 12
               

               
Conread position:
               
208-461
               

               
Cow position:
               
chr1:67654354-67654106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
13, 153
               

               
Conread position:
               
209-405
               

               
Cow position:
               
chr1:3965805-3965999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
209-432
               

               
Cow position:
               
chr1:46143494-46143277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
8, 38
               

               
Conread position:
               
209-462
               

               
Cow position:
               
chr1:81515201-81515457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
30, 37
               

               
Conread position:
               
209-462
               

               
Cow position:
               
chr1:95835831-95835573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
18, 76
               

               
Conread position:
               
210-423
               

               
Cow position:
               
chr1:96019197-96019412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
15, 74
               

               
Conread position:
               
210-493
               

               
Cow position:
               
chr1:1496564-1496282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
24, 39
               

               
Conread position:
               
211-432
               

               
Cow position:
               
chr1:57089709-57089488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
28, 35
               

               
Conread position:
               
211-451
               

               
Cow position:
               
chr1:41027042-41027281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
8, 77
               

               
Conread position:
               
211-455
               

               
Cow position:
               
chr1:52912926-52912683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 21
               

               
Conread position:
               
211-467
               

               
Cow position:
               
chr1:5751283-5751536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
29, 35
               

               
Conread position:
               
211-471
               

               
Cow position:
               
chr1:92523984-92524246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
69, 63
               

               
Conread position:
               
212-470
               

               
Cow position:
               
chr1:50432515-50432257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
27, 36
               

               
Conread position:
               
213-432
               

               
Cow position:
               
chr1:17055968-17056180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
26, 12
               

               
Conread position:
               
214-409
               

               
Cow position:
               
chr1:36688405-36688209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
25, 32
               

               
Conread position:
               
216-407
               

               
Cow position:
               
chr1:52488005-52487813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
59, 115
               

               
Conread position:
               
217-457
               

               
Cow position:
               
chr1:19515644-19515403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
5, 30
               

               
Conread position:
               
217-461
               

               
Cow position:
               
chr1:42887301-42887065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
55, 67
               

               
Conread position:
               
217-463
               

               
Cow position:
               
chr1:73020687-73020439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
5, 137
               

               
Conread position:
               
217-488
               

               
Cow position:
               
chr1:41138166-41137899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
49, 14
               

               
Conread position:
               
219-413
               

               
Cow position:
               
chr1:15206894-15206703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
55, 93
               

               
Conread position:
               
219-431
               

               
Cow position:
               
chr1:84104083-84103869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
219-451
               

               
Cow position:
               
chr1:54267959-54267733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
53, 64
               

               
Conread position:
               
219-451
               

               
Cow position:
               
chr1:73721338-73721573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
219-462
               

               
Cow position:
               
chr1:55229954-55230189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
56, 150
               

               
Conread position:
               
219-469
               

               
Cow position:
               
chr1:100823015-100823262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
31, 65
               

               
Conread position:
               
219-485
               

               
Cow position:
               
chr1:38706876-38706614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
20, 27
               

               
Conread position:
               
219-497
               

               
Cow position:
               
chr1:72422430-72422148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
33, 65
               

               
Conread position:
               
220-422
               

               
Cow position:
               
chr1:55753236-55753039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
44, 71
               

               
Conread position:
               
220-490
               

               
Cow position:
               
chr1:6590013-6590282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
54, 24
               

               
Conread position:
               
222-417
               

               
Cow position:
               
chr1:49334411-49334214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
17, 24
               

               
Conread position:
               
222-564
               

               
Cow position:
               
chr1:57637338-57637673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
52, 210
               

               
Conread position:
               
224-420
               

               
Cow position:
               
chr1:69940840-69940646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
51, 136
               

               
Conread position:
               
225-462
               

               
Cow position:
               
chr1:45315652-45315410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
225-462
               

               
Cow position:
               
chr1:90267705-90267940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
14, 21
               

               
Conread position:
               
227-431
               

               
Cow position:
               
chr1:759432-759223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
42, 57
               

               
Conread position:
               
230-432
               

               
Cow position:
               
chr1:96558861-96558656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
232-468
               

               
Cow position:
               
chr1:95152863-95153102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
43, 13
               

               
Conread position:
               
233-432
               

               
Cow position:
               
chr1:97540628-97540829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
26, 12
               

               
Conread position:
               
233-475
               

               
Cow position:
               
chr1:21681544-21681303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
23, 12
               

               
Conread position:
               
233-481
               

               
Cow position:
               
chr1:4582544-4582793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
51, 12
               

               
Conread position:
               
238-416
               

               
Cow position:
               
chr1:6031622-6031801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
32, 7
               

               
Conread position:
               
238-432
               

               
Cow position:
               
chr1:102768179-102768368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
238-461
               

               
Cow position:
               
chr1:6790773-6790988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
32, 7
               

               
Conread position:
               
244-492
               

               
Cow position:
               
chr1:81364263-81364509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
14, 40
               

               
Conread position:
               
246-409
               

               
Cow position:
               
chr1:50843842-50843681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
108, 21
               

               
Conread position:
               
246-422
               

               
Cow position:
               
chr1:69691710-69691532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
13, 37
               

               
Conread position:
               
246-432
               

               
Cow position:
               
chr1:25022070-25021888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
26, 123
               

               
Conread position:
               
249-432
               

               
Cow position:
               
chr1:84594898-84595081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
21, 33
               

               
Conread position:
               
249-434
               

               
Cow position:
               
chr1:32014206-32014383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
24, 33
               

               
Conread position:
               
250-432
               

               
Cow position:
               
chr1:43296707-43296524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
132, 31
               

               
Conread position:
               
250-462
               

               
Cow position:
               
chr1:71790137-71789933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
23, 30
               

               
Conread position:
               
259-462
               

               
Cow position:
               
chr1:55297153-55296948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
262-431
               

               
Cow position:
               
chr1:78781999-78782175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
71, 19
               

               
Conread position:
               
262-432
               

               
Cow position:
               
chr1:20125815-20125985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 28
               

               
Conread position:
               
262-432
               

               
Cow position:
               
chr1:84815152-84815325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
263-400
               

               
Cow position:
               
chr1:67539585-67539720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
263-417
               

               
Cow position:
               
chr1:70146887-70146733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
10, 17
               

               
Conread position:
               
263-421
               

               
Cow position:
               
chr1:81638572-81638721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
10, 19
               

               
Conread position:
               
263-432
               

               
Cow position:
               
chr1:81668795-81668622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
263-432
               

               
Cow position:
               
chr1:95618666-95618831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
263-432
               

               
Cow position:
               
chr1:96201292-96201125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
10, 17
               

               
Conread position:
               
263-435
               

               
Cow position:
               
chr1:47966999-47966827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
10, 17
               

               
Conread position:
               
263-439
               

               
Cow position:
               
chr1:61134436-61134612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
10, 17
               

               
Conread position:
               
263-458
               

               
Cow position:
               
chr1:64457989-64458189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
10, 19
               

               
Conread position:
               
263-465
               

               
Cow position:
               
chr1:29671200-29671001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
6, 19
               

               
Conread position:
               
264-470
               

               
Cow position:
               
chr1:69378574-69378369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
170, 79
               

               
Conread position:
               
265-461
               

               
Cow position:
               
chr1:5284206-5284011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
74, 165
               

               
Conread position:
               
270-467
               

               
Cow position:
               
chr1:1802199-1802398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
164, 11
               

               
Conread position:
               
272-432
               

               
Cow position:
               
chr1:98557085-98556928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
276-432
               

               
Cow position:
               
chr1:41953965-41953809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
276-451
               

               
Cow position:
               
chr1:99637217-99637041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
161, 0
               

               
Conread position:
               
278-461
               

               
Cow position:
               
chr1:77685942-77685763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
279-415
               

               
Cow position:
               
chr1:102797958-102797822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
279-432
               

               
Cow position:
               
chr1:4573763-4573915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
279-432
               

               
Cow position:
               
chr1:19599321-19599170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
279-432
               

               
Cow position:
               
chr1:26984049-26984202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
279-432
               

               
Cow position:
               
chr1:63994515-63994365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
279-432
               

               
Cow position:
               
chr1:98380257-98380105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
279-458
               

               
Cow position:
               
chr1:85622569-85622744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
279-478
               

               
Cow position:
               
chr1:20871519-20871326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
279-479
               

               
Cow position:
               
chr1:90879696-90879505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
279-494
               

               
Cow position:
               
chr1:81473195-81473412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
180, 158
               

               
Conread position:
               
280-423
               

               
Cow position:
               
chr1:11489118-11488974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
280-444
               

               
Cow position:
               
chr1:78034863-78034703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
280-453
               

               
Cow position:
               
chr1:101280697-101280528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
280-463
               

               
Cow position:
               
chr1:3130508-3130328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
281-415
               

               
Cow position:
               
chr1:54569740-54569874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
281-417
               

               
Cow position:
               
chr1:731931-731792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
281-419
               

               
Cow position:
               
chr1:3666989-3666851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
281-422
               

               
Cow position:
               
chr1:22231690-22231831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
281-422
               

               
Cow position:
               
chr1:76518464-76518605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
281-425
               

               
Cow position:
               
chr1:48447508-48447653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
103, 33
               

               
Conread position:
               
281-427
               

               
Cow position:
               
chr1:96482706-96482857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
54, 69
               

               
Conread position:
               
281-431
               

               
Cow position:
               
chr1:7965888-7966036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
281-432
               

               
Cow position:
               
chr1:23633888-23633737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
281-432
               

               
Cow position:
               
chr1:40181583-40181431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
281-432
               

               
Cow position:
               
chr1:46245698-46245546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
120, 37
               

               
Conread position:
               
281-432
               

               
Cow position:
               
chr1:51860519-51860374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
281-432
               

               
Cow position:
               
chr1:69442476-69442325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
281-432
               

               
Cow position:
               
chr1:71664855-71664704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
281-434
               

               
Cow position:
               
chr1:39684102-39683950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
92, 40
               

               
Conread position:
               
281-438
               

               
Cow position:
               
chr1:23372901-23373058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
153, 77
               

               
Conread position:
               
281-464
               

               
Cow position:
               
chr1:94823350-94823173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
281-470
               

               
Cow position:
               
chr1:41022461-41022645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
155, 86
               

               
Conread position:
               
281-470
               

               
Cow position:
               
chr1:79178670-79178862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
281-473
               

               
Cow position:
               
chr1:1380039-1380230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
128, 159
               

               
Conread position:
               
281-478
               

               
Cow position:
               
chr1:9637071-9637259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
281-480
               

               
Cow position:
               
chr1:30035265-30035457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
47, 30
               

               
Conread position:
               
281-482
               

               
Cow position:
               
chr1:62469103-62469297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
50, 8
               

               
Conread position:
               
281-485
               

               
Cow position:
               
chr1:25955937-25956145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
153, 93
               

               
Conread position:
               
281-494
               

               
Cow position:
               
chr1:73534599-73534383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
171, 67
               

               
Conread position:
               
282-462
               

               
Cow position:
               
chr1:36018740-36018568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
282-502
               

               
Cow position:
               
chr1:102730719-102730498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
96, 194
               

               
Conread position:
               
283-417
               

               
Cow position:
               
chr1:10523744-10523877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
283-423
               

               
Cow position:
               
chr1:31630243-31630100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
283-432
               

               
Cow position:
               
chr1:101525881-101525730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
286-473
               

               
Cow position:
               
chr1:42796924-42797112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
138, 82
               

               
Conread position:
               
287-472
               

               
Cow position:
               
chr1:69411649-69411467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
149, 117
               

               
Conread position:
               
287-477
               

               
Cow position:
               
chr1:90192464-90192653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 141
               

               
Conread position:
               
287-498
               

               
Cow position:
               
chr1:89146827-89146619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
191, 149
               

               
Conread position:
               
288-432
               

               
Cow position:
               
chr1:47190946-47190803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
296-462
               

               
Cow position:
               
chr1:73398017-73397849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
145, 160
               

               
Conread position:
               
297-470
               

               
Cow position:
               
chr1:36625573-36625741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
298-423
               

               
Cow position:
               
chr1:83246484-83246609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
299-468
               

               
Cow position:
               
chr1:65160188-65160354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
303-484
               

               
Cow position:
               
chr1:64705963-64706139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
361-639
               

               
Cow position:
               
chr1:89835641-89835929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
102, 78
               

               
Conread position:
               
447-626
               

               
Cow position:
               
chr1:88910896-88910715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
9, 129
               

               
Conread position:
               
450-626
               

               
Cow position:
               
chr1:57119333-57119159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
162, 15
               

               
Conread position:
               
457-642
               

               
Cow position:
               
chr1:33921262-33921079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
179, 59
               

               
Conread position:
               
460-626
               

               
Cow position:
               
chr1:25793418-25793251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
100, 52
               

               
Conread position:
               
461-644
               

               
Cow position:
               
chr1:46006183-46006002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
85, 77
               

               
Conread position:
               
465-612
               

               
Cow position:
               
chr1:26531556-26531411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
31, 11
               

               
Conread position:
               
465-612
               

               
Cow position:
               
chr1:44169679-44169824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
467-626
               

               
Cow position:
               
chr1:38205503-38205658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
467-638
               

               
Cow position:
               
chr1:95765063-95764894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
147, 8
               

               
Conread position:
               
468-569
               

               
Cow position:
               
chr1:39121807-39121707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
468-598
               

               
Cow position:
               
chr1:30441986-30442114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
468-610
               

               
Cow position:
               
chr1:23099933-23100070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
468-610
               

               
Cow position:
               
chr1:54289163-54289022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
468-610
               

               
Cow position:
               
chr1:79663409-79663265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
85, 108
               

               
Conread position:
               
468-611
               

               
Cow position:
               
chr1:23759810-23759954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
54, 34
               

               
Conread position:
               
468-611
               

               
Cow position:
               
chr1:64624798-64624659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
468-611
               

               
Cow position:
               
chr1:69415680-69415540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
468-611
               

               
Cow position:
               
chr1:78791275-78791138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
468-612
               

               
Cow position:
               
chr1:9958533-9958676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
133, 18
               

               
Conread position:
               
468-612
               

               
Cow position:
               
chr1:24188252-24188392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
468-612
               

               
Cow position:
               
chr1:26427832-26427690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
468-612
               

               
Cow position:
               
chr1:46821997-46822140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
63, 71
               

               
Conread position:
               
468-612
               

               
Cow position:
               
chr1:59132187-59132045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
468-612
               

               
Cow position:
               
chr1:80384734-80384592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
468-612
               

               
Cow position:
               
chr1:80764506-80764364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
468-612
               

               
Cow position:
               
chr1:82378821-82378962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
468-612
               

               
Cow position:
               
chr1:83926416-83926559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
468-626
               

               
Cow position:
               
chr1:30066648-30066807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
44, 106
               

               
Conread position:
               
468-626
               

               
Cow position:
               
chr1:31390560-31390403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
20, 106
               

               
Conread position:
               
468-626
               

               
Cow position:
               
chr1:45925069-45925226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
138, 50
               

               
Conread position:
               
468-626
               

               
Cow position:
               
chr1:62142454-62142300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
468-627
               

               
Cow position:
               
chr1:42555295-42555448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
468-634
               

               
Cow position:
               
chr1:71136182-71136346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
146, 36
               

               
Conread position:
               
468-636
               

               
Cow position:
               
chr1:63504363-63504531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
145, 28
               

               
Conread position:
               
468-637
               

               
Cow position:
               
chr1:70533908-70533741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
157, 16
               

               
Conread position:
               
468-644
               

               
Cow position:
               
chr1:29337944-29338118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
468-645
               

               
Cow position:
               
chr1:15902523-15902702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
146, 105
               

               
Conread position:
               
468-646
               

               
Cow position:
               
chr1:18414437-18414265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
146, 42
               

               
Conread position:
               
468-646
               

               
Cow position:
               
chr1:90390353-90390167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
55, 109
               

               
Conread position:
               
468-646
               

               
Cow position:
               
chr1:95229302-95229120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
156, 105
               

               
Conread position:
               
469-611
               

               
Cow position:
               
chr1:96043648-96043790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
42, 98
               

               
Conread position:
               
469-646
               

               
Cow position:
               
chr1:66355684-66355511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
472-610
               

               
Cow position:
               
chr1:50261894-50261759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
472-612
               

               
Cow position:
               
chr1:54217050-54217187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
472-612
               

               
Cow position:
               
chr1:93110583-93110442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
17, 104
               

               
Conread position:
               
472-624
               

               
Cow position:
               
chr1:72732074-72732222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
473-639
               

               
Cow position:
               
chr1:541829-541992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
475-610
               

               
Cow position:
               
chr1:97622184-97622051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
475-626
               

               
Cow position:
               
chr1:58825577-58825723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
475-626
               

               
Cow position:
               
chr1:85141698-85141550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
475-635
               

               
Cow position:
               
chr1:25184147-25184308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
139, 29
               

               
Conread position:
               
475-646
               

               
Cow position:
               
chr1:71782630-71782464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
477-633
               

               
Cow position:
               
chr1:53920625-53920783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
136, 35
               

               
Conread position:
               
477-641
               

               
Cow position:
               
chr1:79115384-79115550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
135, 44
               

               
Conread position:
               
478-625
               

               
Cow position:
               
chr1:51565568-51565712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
479-646
               

               
Cow position:
               
chr1:70389488-70389658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
36, 45
               

               
Conread position:
               
481-624
               

               
Cow position:
               
chr1:64218388-64218243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
133, 92
               

               
Conread position:
               
484-645
               

               
Cow position:
               
chr1:79215824-79215663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
17, 29
               

               
Conread position:
               
497-627
               

               
Cow position:
               
chr1:55181769-55181638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
117, 16
               

               
Conread position:
               
497-627
               

               
Cow position:
               
chr1:55184839-55184970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
117, 16
               
Show alignments to all cow chromosomes.