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Cow genome map

           
Conread name:
           
Ss1.1-Mixc-0025o19.5
        

               
Conread position:
               
19-422
               

               
Cow position:
               
chr27:30871884-30872275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 61
               

               
Conread position:
               
27-465
               

               
Cow position:
               
chr27:30765195-30764775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 5
               

               
Conread position:
               
29-162
               

               
Cow position:
               
chr27:18922613-18922482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
112, 48
               

               
Conread position:
               
29-470
               

               
Cow position:
               
chr27:22220716-22220283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 91
               

               
Conread position:
               
31-389
               

               
Cow position:
               
chr27:28270986-28271338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
88, 46
               

               
Conread position:
               
32-432
               

               
Cow position:
               
chr27:27460411-27460806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
5, 154
               

               
Conread position:
               
32-434
               

               
Cow position:
               
chr27:19661101-19660698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 22
               

               
Conread position:
               
33-462
               

               
Cow position:
               
chr27:30890449-30890048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
44, 164
               

               
Conread position:
               
34-325
               

               
Cow position:
               
chr27:1498471-1498192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
241, 20
               

               
Conread position:
               
34-432
               

               
Cow position:
               
chr27:7971727-7971333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
103, 44
               

               
Conread position:
               
35-432
               

               
Cow position:
               
chr27:28001661-28002031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
84, 35
               

               
Conread position:
               
37-430
               

               
Cow position:
               
chr27:7731094-7731500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
82, 40
               

               
Conread position:
               
37-462
               

               
Cow position:
               
chr27:27136370-27136781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
200, 27
               

               
Conread position:
               
38-141
               

               
Cow position:
               
chr27:26406887-26406989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
39, 81
               

               
Conread position:
               
38-163
               

               
Cow position:
               
chr27:6674394-6674266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
38-165
               

               
Cow position:
               
chr27:1884190-1884070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
38-177
               

               
Cow position:
               
chr27:30483297-30483155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
38-179
               

               
Cow position:
               
chr27:25783756-25783619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
15, 41
               

               
Conread position:
               
38-191
               

               
Cow position:
               
chr27:16620145-16619991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
38-191
               

               
Cow position:
               
chr27:22771911-22771754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
38-197
               

               
Cow position:
               
chr27:24559294-24559448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
109, 29
               

               
Conread position:
               
38-200
               

               
Cow position:
               
chr27:27055731-27055568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
38-201
               

               
Cow position:
               
chr27:1058526-1058686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
39, 111
               

               
Conread position:
               
38-201
               

               
Cow position:
               
chr27:6523199-6523031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
37, 60
               

               
Conread position:
               
38-201
               

               
Cow position:
               
chr27:26224115-26224280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
38-202
               

               
Cow position:
               
chr27:19589629-19589467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
39, 112
               

               
Conread position:
               
38-202
               

               
Cow position:
               
chr27:22498706-22498549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
38-202
               

               
Cow position:
               
chr27:23882220-23882385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
39, 146
               

               
Conread position:
               
38-202
               

               
Cow position:
               
chr27:24357419-24357250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
38-202
               

               
Cow position:
               
chr27:25790957-25790795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
91, 39
               

               
Conread position:
               
38-202
               

               
Cow position:
               
chr27:27259762-27259603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
86, 39
               

               
Conread position:
               
38-202
               

               
Cow position:
               
chr27:31147520-31147678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
39, 22
               

               
Conread position:
               
38-202
               

               
Cow position:
               
chr27:31499221-31499055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
81, 34
               

               
Conread position:
               
38-205
               

               
Cow position:
               
chr27:14902495-14902664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
39, 71
               

               
Conread position:
               
38-211
               

               
Cow position:
               
chr27:20544097-20543929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
39, 82
               

               
Conread position:
               
38-211
               

               
Cow position:
               
chr27:27550594-27550759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
38-212
               

               
Cow position:
               
chr27:11255666-11255502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
81, 28
               

               
Conread position:
               
38-213
               

               
Cow position:
               
chr27:8291858-8292023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
38-213
               

               
Cow position:
               
chr27:9169491-9169664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-213
               

               
Cow position:
               
chr27:28038184-28038361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
38-214
               

               
Cow position:
               
chr27:18434317-18434490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
21, 112
               

               
Conread position:
               
38-216
               

               
Cow position:
               
chr27:26398105-26398279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
39, 61
               

               
Conread position:
               
38-216
               

               
Cow position:
               
chr27:29251033-29250858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
39, 125
               

               
Conread position:
               
38-217
               

               
Cow position:
               
chr27:22268658-22268479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
39, 162
               

               
Conread position:
               
38-217
               

               
Cow position:
               
chr27:27141747-27141580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
38-242
               

               
Cow position:
               
chr27:4829654-4829843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
12, 27
               

               
Conread position:
               
38-250
               

               
Cow position:
               
chr27:30843925-30844125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
32, 19
               

               
Conread position:
               
38-253
               

               
Cow position:
               
chr27:16871762-16871973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
40, 54
               

               
Conread position:
               
38-305
               

               
Cow position:
               
chr27:24321343-24321085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
40, 159
               

               
Conread position:
               
38-311
               

               
Cow position:
               
chr27:28018490-28018228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
39, 147
               

               
Conread position:
               
38-314
               

               
Cow position:
               
chr27:4041-3784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
39, 69
               

               
Conread position:
               
38-314
               

               
Cow position:
               
chr27:25380144-25379875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
202, 39
               

               
Conread position:
               
38-319
               

               
Cow position:
               
chr27:23472409-23472141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
39, 121
               

               
Conread position:
               
38-345
               

               
Cow position:
               
chr27:26427975-26428276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 158
               

               
Conread position:
               
38-349
               

               
Cow position:
               
chr27:20549560-20549860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
199, 28
               

               
Conread position:
               
38-350
               

               
Cow position:
               
chr27:30354190-30354493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
217, 39
               

               
Conread position:
               
38-355
               

               
Cow position:
               
chr27:20553870-20553578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
38-356
               

               
Cow position:
               
chr27:24477570-24477262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
39, 116
               

               
Conread position:
               
38-363
               

               
Cow position:
               
chr27:27038690-27038999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
84, 34
               

               
Conread position:
               
38-365
               

               
Cow position:
               
chr27:26413102-26413418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
231, 38
               

               
Conread position:
               
38-366
               

               
Cow position:
               
chr27:25411366-25411673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
114, 40
               

               
Conread position:
               
38-369
               

               
Cow position:
               
chr27:12246812-12246487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
40, 59
               

               
Conread position:
               
38-369
               

               
Cow position:
               
chr27:21393351-21393674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-373
               

               
Cow position:
               
chr27:25277290-25276972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
81, 31
               

               
Conread position:
               
38-380
               

               
Cow position:
               
chr27:27640838-27641189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 217
               

               
Conread position:
               
38-381
               

               
Cow position:
               
chr27:4385913-4386241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
202, 40
               

               
Conread position:
               
38-381
               

               
Cow position:
               
chr27:15643329-15642995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
39, 167
               

               
Conread position:
               
38-381
               

               
Cow position:
               
chr27:22454628-22454956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
63, 31
               

               
Conread position:
               
38-381
               

               
Cow position:
               
chr27:30988951-30988618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
39, 55
               

               
Conread position:
               
38-383
               

               
Cow position:
               
chr27:23483376-23483044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
199, 29
               

               
Conread position:
               
38-384
               

               
Cow position:
               
chr27:10992507-10992167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
87, 39
               

               
Conread position:
               
38-402
               

               
Cow position:
               
chr27:27019947-27020298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 39
               

               
Conread position:
               
38-407
               

               
Cow position:
               
chr27:20795937-20795586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
245, 20
               

               
Conread position:
               
38-410
               

               
Cow position:
               
chr27:23632755-23632394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
39, 115
               

               
Conread position:
               
38-415
               

               
Cow position:
               
chr27:15454365-15454000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 59
               

               
Conread position:
               
38-415
               

               
Cow position:
               
chr27:31230940-31231290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
38-417
               

               
Cow position:
               
chr27:24331879-24331501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 53
               

               
Conread position:
               
38-417
               

               
Cow position:
               
chr27:28518439-28518080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 37
               

               
Conread position:
               
38-417
               

               
Cow position:
               
chr27:28931634-28932015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 175
               

               
Conread position:
               
38-422
               

               
Cow position:
               
chr27:6500218-6499840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 161
               

               
Conread position:
               
38-422
               

               
Cow position:
               
chr27:11535943-11536325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
39, 104
               

               
Conread position:
               
38-422
               

               
Cow position:
               
chr27:22735448-22735812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
81, 55
               

               
Conread position:
               
38-423
               

               
Cow position:
               
chr27:30582891-30582518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
85, 53
               

               
Conread position:
               
38-430
               

               
Cow position:
               
chr27:7346814-7346444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
361, 39
               

               
Conread position:
               
38-430
               

               
Cow position:
               
chr27:26239178-26238798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
199, 39
               

               
Conread position:
               
38-431
               

               
Cow position:
               
chr27:19388172-19387791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 154
               

               
Conread position:
               
38-431
               

               
Cow position:
               
chr27:26509003-26509383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 153
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr27:299230-299602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
43, 82
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr27:7412536-7412166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
40, 108
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr27:8629718-8630101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
321, 48
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr27:10980017-10979632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 108
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr27:15204078-15204464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
36, 68
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr27:16705400-16705025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
81, 51
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr27:18030903-18031298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
39, 230
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr27:19685561-19685938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
234, 40
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr27:19718077-19717670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
181, 42
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr27:22440293-22439909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
81, 113
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr27:26864965-26865336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
39, 30
               

               
Conread position:
               
38-433
               

               
Cow position:
               
chr27:10582516-10582138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
215, 37
               

               
Conread position:
               
38-439
               

               
Cow position:
               
chr27:13317801-13318212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 220
               

               
Conread position:
               
38-443
               

               
Cow position:
               
chr27:2957561-2957182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
19, 132
               

               
Conread position:
               
38-451
               

               
Cow position:
               
chr27:27388875-27389270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
246, 31
               

               
Conread position:
               
38-452
               

               
Cow position:
               
chr27:15408890-15409273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
219, 40
               

               
Conread position:
               
38-454
               

               
Cow position:
               
chr27:12516352-12515948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
17, 44
               

               
Conread position:
               
38-455
               

               
Cow position:
               
chr27:30814558-30814167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
194, 31
               

               
Conread position:
               
38-455
               

               
Cow position:
               
chr27:31372826-31373219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 39
               

               
Conread position:
               
38-458
               

               
Cow position:
               
chr27:1353738-1353324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 15
               

               
Conread position:
               
38-461
               

               
Cow position:
               
chr27:22547251-22547646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
40, 161
               

               
Conread position:
               
38-461
               

               
Cow position:
               
chr27:30406878-30407301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 61
               

               
Conread position:
               
38-462
               

               
Cow position:
               
chr27:6541778-6541380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
38-462
               

               
Cow position:
               
chr27:16284626-16284233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
39, 136
               

               
Conread position:
               
38-462
               

               
Cow position:
               
chr27:28496221-28496624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
37, 146
               

               
Conread position:
               
38-463
               

               
Cow position:
               
chr27:19546349-19546781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
52, 18
               

               
Conread position:
               
38-469
               

               
Cow position:
               
chr27:18507785-18507383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
237, 39
               

               
Conread position:
               
38-469
               

               
Cow position:
               
chr27:27438351-27438769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
88, 39
               

               
Conread position:
               
38-470
               

               
Cow position:
               
chr27:6550604-6550196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
328, 39
               

               
Conread position:
               
38-470
               

               
Cow position:
               
chr27:19668635-19669067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
40, 208
               

               
Conread position:
               
38-470
               

               
Cow position:
               
chr27:22035220-22035636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
39, 126
               

               
Conread position:
               
38-470
               

               
Cow position:
               
chr27:22426675-22427104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
92, 48
               

               
Conread position:
               
38-470
               

               
Cow position:
               
chr27:27003128-27003527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
408, 28
               

               
Conread position:
               
38-471
               

               
Cow position:
               
chr27:13875888-13875461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 166
               

               
Conread position:
               
38-474
               

               
Cow position:
               
chr27:17472966-17472546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
86, 39
               

               
Conread position:
               
38-475
               

               
Cow position:
               
chr27:27632456-27632861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
48, 54
               

               
Conread position:
               
38-484
               

               
Cow position:
               
chr27:20067825-20068255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
293, 16
               

               
Conread position:
               
38-486
               

               
Cow position:
               
chr27:11480476-11480914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-487
               

               
Cow position:
               
chr27:30915155-30914720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 31
               

               
Conread position:
               
39-168
               

               
Cow position:
               
chr27:28008904-28009035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
80, 40
               

               
Conread position:
               
39-195
               

               
Cow position:
               
chr27:29283256-29283410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
80, 38
               

               
Conread position:
               
39-200
               

               
Cow position:
               
chr27:21569691-21569849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
87, 38
               

               
Conread position:
               
39-200
               

               
Cow position:
               
chr27:30362396-30362240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
38, 55
               

               
Conread position:
               
39-201
               

               
Cow position:
               
chr27:707100-706944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
39-201
               

               
Cow position:
               
chr27:26440904-26441068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
39-309
               

               
Cow position:
               
chr27:21350863-21351129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
38, 160
               

               
Conread position:
               
39-314
               

               
Cow position:
               
chr27:4812724-4812996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
42, 160
               

               
Conread position:
               
39-353
               

               
Cow position:
               
chr27:8353629-8353327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
42, 112
               

               
Conread position:
               
39-356
               

               
Cow position:
               
chr27:19647789-19648097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
149, 30
               

               
Conread position:
               
39-380
               

               
Cow position:
               
chr27:27064287-27064618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
39, 89
               

               
Conread position:
               
39-384
               

               
Cow position:
               
chr27:26807411-26807747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
233, 41
               

               
Conread position:
               
39-403
               

               
Cow position:
               
chr27:22418612-22418963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 73
               

               
Conread position:
               
39-416
               

               
Cow position:
               
chr27:21408400-21408778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
38, 160
               

               
Conread position:
               
39-417
               

               
Cow position:
               
chr27:27245198-27245577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
167, 189
               

               
Conread position:
               
39-417
               

               
Cow position:
               
chr27:30868586-30868964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 81
               

               
Conread position:
               
39-420
               

               
Cow position:
               
chr27:1768481-1768838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
241, 30
               

               
Conread position:
               
39-420
               

               
Cow position:
               
chr27:19896909-19896547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
38, 94
               

               
Conread position:
               
39-421
               

               
Cow position:
               
chr27:13252162-13251807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
38, 146
               

               
Conread position:
               
39-422
               

               
Cow position:
               
chr27:18739540-18739156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
91, 38
               

               
Conread position:
               
39-432
               

               
Cow position:
               
chr27:23554167-23554557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 178
               

               
Conread position:
               
39-434
               

               
Cow position:
               
chr27:28921744-28922125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 58
               

               
Conread position:
               
39-450
               

               
Cow position:
               
chr27:15866376-15865972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
80, 39
               

               
Conread position:
               
39-454
               

               
Cow position:
               
chr27:16786979-16786585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
39, 125
               

               
Conread position:
               
39-471
               

               
Cow position:
               
chr27:17397294-17397720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 168
               

               
Conread position:
               
40-200
               

               
Cow position:
               
chr27:28190066-28190220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
40-202
               

               
Cow position:
               
chr27:12429560-12429396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
24, 140
               

               
Conread position:
               
40-211
               

               
Cow position:
               
chr27:18215207-18215035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
37, 127
               

               
Conread position:
               
40-211
               

               
Cow position:
               
chr27:24999583-24999757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
40-213
               

               
Cow position:
               
chr27:6058654-6058482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
37, 135
               

               
Conread position:
               
40-213
               

               
Cow position:
               
chr27:9090650-9090821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
37, 66
               

               
Conread position:
               
40-256
               

               
Cow position:
               
chr27:13198068-13197852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
37, 95
               

               
Conread position:
               
40-350
               

               
Cow position:
               
chr27:26151171-26150869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
197, 37
               

               
Conread position:
               
40-362
               

               
Cow position:
               
chr27:21452918-21453255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
36, 193
               

               
Conread position:
               
40-366
               

               
Cow position:
               
chr27:23930116-23929804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
200, 29
               

               
Conread position:
               
40-397
               

               
Cow position:
               
chr27:18593422-18593078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
37, 119
               

               
Conread position:
               
40-431
               

               
Cow position:
               
chr27:427124-426743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 149
               

               
Conread position:
               
40-431
               

               
Cow position:
               
chr27:23891089-23890706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 37
               

               
Conread position:
               
40-432
               

               
Cow position:
               
chr27:8062205-8062579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
37, 74
               

               
Conread position:
               
40-432
               

               
Cow position:
               
chr27:22171450-22171074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
40-432
               

               
Cow position:
               
chr27:26424435-26424804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
243, 40
               

               
Conread position:
               
41-413
               

               
Cow position:
               
chr27:27270388-27270755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
36, 58
               

               
Conread position:
               
41-470
               

               
Cow position:
               
chr27:20354730-20354335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
199, 23
               

               
Conread position:
               
42-137
               

               
Cow position:
               
chr27:26322503-26322407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
97
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
42-195
               

               
Cow position:
               
chr27:26625274-26625130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
77, 35
               

               
Conread position:
               
42-213
               

               
Cow position:
               
chr27:15858941-15859106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
42-217
               

               
Cow position:
               
chr27:20592133-20591957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
77, 35
               

               
Conread position:
               
42-217
               

               
Cow position:
               
chr27:23070210-23070381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
35, 55
               

               
Conread position:
               
42-222
               

               
Cow position:
               
chr27:27683967-27684148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
42-254
               

               
Cow position:
               
chr27:154518-154312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
32, 88
               

               
Conread position:
               
42-256
               

               
Cow position:
               
chr27:1183726-1183937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
35, 55
               

               
Conread position:
               
42-272
               

               
Cow position:
               
chr27:27040757-27040533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
89, 35
               

               
Conread position:
               
42-332
               

               
Cow position:
               
chr27:30551145-30550859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
215, 35
               

               
Conread position:
               
42-344
               

               
Cow position:
               
chr27:27843843-27844146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
35, 92
               

               
Conread position:
               
42-348
               

               
Cow position:
               
chr27:24014591-24014886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
195, 35
               

               
Conread position:
               
42-373
               

               
Cow position:
               
chr27:24227644-24227971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
83, 35
               

               
Conread position:
               
42-394
               

               
Cow position:
               
chr27:26959471-26959804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
209, 18
               

               
Conread position:
               
42-425
               

               
Cow position:
               
chr27:21668975-21669333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
359, 34
               

               
Conread position:
               
42-432
               

               
Cow position:
               
chr27:14670231-14670608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
36, 159
               

               
Conread position:
               
42-432
               

               
Cow position:
               
chr27:26489752-26490133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
35, 165
               

               
Conread position:
               
42-432
               

               
Cow position:
               
chr27:28206947-28206576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
36, 106
               

               
Conread position:
               
42-451
               

               
Cow position:
               
chr27:15668617-15669017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
44, 147
               

               
Conread position:
               
42-461
               

               
Cow position:
               
chr27:24446007-24446395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
42-462
               

               
Cow position:
               
chr27:16781014-16780601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
36, 62
               

               
Conread position:
               
42-462
               

               
Cow position:
               
chr27:18544147-18543733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
35, 50
               

               
Conread position:
               
42-477
               

               
Cow position:
               
chr27:815514-815064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
160, 24
               

               
Conread position:
               
42-479
               

               
Cow position:
               
chr27:7649433-7649864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
18, 100
               

               
Conread position:
               
43-202
               

               
Cow position:
               
chr27:4011822-4011669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
76, 25
               

               
Conread position:
               
45-202
               

               
Cow position:
               
chr27:30177428-30177584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
32, 71
               

               
Conread position:
               
45-207
               

               
Cow position:
               
chr27:22723560-22723718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
79, 32
               

               
Conread position:
               
45-349
               

               
Cow position:
               
chr27:29312523-29312822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
33, 84
               

               
Conread position:
               
45-356
               

               
Cow position:
               
chr27:3306920-3306620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
33, 69
               

               
Conread position:
               
45-371
               

               
Cow position:
               
chr27:4673167-4672842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
183, 41
               

               
Conread position:
               
45-431
               

               
Cow position:
               
chr27:12596906-12596555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
85, 25
               

               
Conread position:
               
45-460
               

               
Cow position:
               
chr27:7212566-7212986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
33, 94
               

               
Conread position:
               
45-470
               

               
Cow position:
               
chr27:29831540-29831970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
33, 46
               

               
Conread position:
               
46-350
               

               
Cow position:
               
chr27:1123180-1122883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
32, 151
               

               
Conread position:
               
46-470
               

               
Cow position:
               
chr27:11435183-11435587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
86, 18
               

               
Conread position:
               
46-471
               

               
Cow position:
               
chr27:20828561-20828967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
31, 53
               

               
Conread position:
               
47-417
               

               
Cow position:
               
chr27:29977393-29977035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
72, 95
               

               
Conread position:
               
47-430
               

               
Cow position:
               
chr27:29816477-29816855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
30, 50
               

               
Conread position:
               
48-202
               

               
Cow position:
               
chr27:29399958-29399807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
29, 38
               

               
Conread position:
               
49-431
               

               
Cow position:
               
chr27:435378-435005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
104, 41
               

               
Conread position:
               
50-462
               

               
Cow position:
               
chr27:17331644-17331235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
28, 159
               

               
Conread position:
               
51-305
               

               
Cow position:
               
chr27:20789239-20789483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
206, 27
               

               
Conread position:
               
51-345
               

               
Cow position:
               
chr27:715647-715357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
30, 140
               

               
Conread position:
               
51-368
               

               
Cow position:
               
chr27:20641203-20641501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
207, 27
               

               
Conread position:
               
52-458
               

               
Cow position:
               
chr27:18558503-18558108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 59
               

               
Conread position:
               
54-323
               

               
Cow position:
               
chr27:20919030-20918769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
23, 114
               

               
Conread position:
               
56-470
               

               
Cow position:
               
chr27:19500097-19500498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
66, 29
               

               
Conread position:
               
59-432
               

               
Cow position:
               
chr27:2592679-2592309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 18
               

               
Conread position:
               
59-472
               

               
Cow position:
               
chr27:16103936-16103546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
60-493
               

               
Cow position:
               
chr27:25427769-25428200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
17, 10
               

               
Conread position:
               
62-213
               

               
Cow position:
               
chr27:22330535-22330690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
65-201
               

               
Cow position:
               
chr27:23455020-23455162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
65-432
               

               
Cow position:
               
chr27:20636944-20637286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
55, 8
               

               
Conread position:
               
66-384
               

               
Cow position:
               
chr27:8168300-8168613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
11, 134
               

               
Conread position:
               
67-202
               

               
Cow position:
               
chr27:26141900-26141763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
67-432
               

               
Cow position:
               
chr27:29236701-29236330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
150, 12
               

               
Conread position:
               
69-235
               

               
Cow position:
               
chr27:10395135-10395299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
8, 23
               

               
Conread position:
               
69-359
               

               
Cow position:
               
chr27:16478215-16478494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
9, 37
               

               
Conread position:
               
69-432
               

               
Cow position:
               
chr27:26999293-26999651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
9, 76
               

               
Conread position:
               
74-202
               

               
Cow position:
               
chr27:30672443-30672572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
74-392
               

               
Cow position:
               
chr27:23545200-23545515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
50, 120
               

               
Conread position:
               
74-420
               

               
Cow position:
               
chr27:20046006-20045675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
44, 107
               

               
Conread position:
               
74-432
               

               
Cow position:
               
chr27:22603291-22602947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
45, 85
               

               
Conread position:
               
75-356
               

               
Cow position:
               
chr27:26581316-26581591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
89, 131
               

               
Conread position:
               
75-422
               

               
Cow position:
               
chr27:11151796-11151453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
12, 135
               

               
Conread position:
               
76-393
               

               
Cow position:
               
chr27:20552642-20552973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
47, 78
               

               
Conread position:
               
77-432
               

               
Cow position:
               
chr27:27694655-27695003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
25, 37
               

               
Conread position:
               
77-491
               

               
Cow position:
               
chr27:26226173-26226575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
42, 31
               

               
Conread position:
               
80-335
               

               
Cow position:
               
chr27:16626011-16625766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
80-356
               

               
Cow position:
               
chr27:30389182-30389452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
172, 35
               

               
Conread position:
               
80-402
               

               
Cow position:
               
chr27:30260781-30261093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
39, 11
               

               
Conread position:
               
81-434
               

               
Cow position:
               
chr27:27442057-27442390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
38, 93
               

               
Conread position:
               
84-383
               

               
Cow position:
               
chr27:29380968-29380673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
44, 19
               

               
Conread position:
               
86-396
               

               
Cow position:
               
chr27:13274046-13274356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
36, 123
               

               
Conread position:
               
86-422
               

               
Cow position:
               
chr27:20078975-20078647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
33, 114
               

               
Conread position:
               
87-462
               

               
Cow position:
               
chr27:15867505-15867132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
32, 101
               

               
Conread position:
               
88-202
               

               
Cow position:
               
chr27:20570228-20570111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
92-356
               

               
Cow position:
               
chr27:26135239-26134997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
92-387
               

               
Cow position:
               
chr27:29504545-29504834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
175, 40
               

               
Conread position:
               
92-389
               

               
Cow position:
               
chr27:20497316-20497018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
36, 117
               

               
Conread position:
               
92-462
               

               
Cow position:
               
chr27:22386972-22386628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
145, 111
               

               
Conread position:
               
92-463
               

               
Cow position:
               
chr27:23594418-23594066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
167, 48
               

               
Conread position:
               
92-475
               

               
Cow position:
               
chr27:20748907-20749270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
16, 29
               

               
Conread position:
               
93-420
               

               
Cow position:
               
chr27:17994841-17995162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
29, 111
               

               
Conread position:
               
94-362
               

               
Cow position:
               
chr27:8263235-8263499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
25, 5
               

               
Conread position:
               
96-432
               

               
Cow position:
               
chr27:26188919-26188599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
30, 5
               

               
Conread position:
               
98-402
               

               
Cow position:
               
chr27:24940006-24939697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
21, 84
               

               
Conread position:
               
98-449
               

               
Cow position:
               
chr27:22559725-22560067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
21, 111
               

               
Conread position:
               
99-353
               

               
Cow position:
               
chr27:20092743-20092986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
167, 50
               

               
Conread position:
               
100-415
               

               
Cow position:
               
chr27:23511084-23510764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
137, 103
               

               
Conread position:
               
119-366
               

               
Cow position:
               
chr27:15215308-15215062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
118, 85
               

               
Conread position:
               
120-408
               

               
Cow position:
               
chr27:5983295-5983011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
14, 52
               

               
Conread position:
               
120-462
               

               
Cow position:
               
chr27:16088882-16088532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
127, 8
               

               
Conread position:
               
120-473
               

               
Cow position:
               
chr27:6925163-6924819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 89
               

               
Conread position:
               
121-451
               

               
Cow position:
               
chr27:29593554-29593877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
17, 86
               

               
Conread position:
               
121-458
               

               
Cow position:
               
chr27:16965645-16965325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
176, 7
               

               
Conread position:
               
127-394
               

               
Cow position:
               
chr27:7974241-7973984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
146, 82
               

               
Conread position:
               
128-372
               

               
Cow position:
               
chr27:20337178-20336931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
46, 90
               

               
Conread position:
               
128-420
               

               
Cow position:
               
chr27:20514887-20514604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
128-432
               

               
Cow position:
               
chr27:26111843-26112146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
57, 82
               

               
Conread position:
               
129-447
               

               
Cow position:
               
chr27:22489343-22489029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
103, 69
               

               
Conread position:
               
130-470
               

               
Cow position:
               
chr27:27405005-27405333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
143, 51
               

               
Conread position:
               
132-380
               

               
Cow position:
               
chr27:23876777-23877023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 93
               

               
Conread position:
               
132-453
               

               
Cow position:
               
chr27:23452521-23452218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
142, 72
               

               
Conread position:
               
132-478
               

               
Cow position:
               
chr27:23559969-23560302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
154, 16
               

               
Conread position:
               
135-422
               

               
Cow position:
               
chr27:1190416-1190694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
140-417
               

               
Cow position:
               
chr27:15241116-15240844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
119, 94
               

               
Conread position:
               
142-473
               

               
Cow position:
               
chr27:23860221-23859895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 67
               

               
Conread position:
               
146-432
               

               
Cow position:
               
chr27:23107853-23108130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
124, 58
               

               
Conread position:
               
151-425
               

               
Cow position:
               
chr27:15865654-15865389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
123, 71
               

               
Conread position:
               
151-462
               

               
Cow position:
               
chr27:5553508-5553217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
126, 20
               

               
Conread position:
               
151-462
               

               
Cow position:
               
chr27:23485256-23484958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
153-366
               

               
Cow position:
               
chr27:20803616-20803823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
96, 66
               

               
Conread position:
               
154-432
               

               
Cow position:
               
chr27:12459321-12459060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
86, 18
               

               
Conread position:
               
155-422
               

               
Cow position:
               
chr27:29613449-29613709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
155-470
               

               
Cow position:
               
chr27:13940520-13940819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
118, 26
               

               
Conread position:
               
157-435
               

               
Cow position:
               
chr27:12425325-12425057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
160-378
               

               
Cow position:
               
chr27:18922796-18923009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
99, 44
               

               
Conread position:
               
162-432
               

               
Cow position:
               
chr27:19933097-19932838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
172-439
               

               
Cow position:
               
chr27:11993842-11994102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
102, 14
               

               
Conread position:
               
173-470
               

               
Cow position:
               
chr27:11561797-11561509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
67, 33
               

               
Conread position:
               
181-428
               

               
Cow position:
               
chr27:28478595-28478360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
87, 21
               

               
Conread position:
               
182-463
               

               
Cow position:
               
chr27:26437106-26437382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
57, 22
               

               
Conread position:
               
196-432
               

               
Cow position:
               
chr27:29991439-29991687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
26, 51
               

               
Conread position:
               
209-461
               

               
Cow position:
               
chr27:20897032-20897276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
29, 13
               

               
Conread position:
               
209-475
               

               
Cow position:
               
chr27:30455987-30455726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
30, 10
               

               
Conread position:
               
210-431
               

               
Cow position:
               
chr27:6319910-6319696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
63, 11
               

               
Conread position:
               
211-432
               

               
Cow position:
               
chr27:31210536-31210322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
47, 8
               

               
Conread position:
               
212-432
               

               
Cow position:
               
chr27:23994429-23994643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
156, 48
               

               
Conread position:
               
214-473
               

               
Cow position:
               
chr27:27740302-27740557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
26, 32
               

               
Conread position:
               
216-432
               

               
Cow position:
               
chr27:11982659-11982876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
23, 30
               

               
Conread position:
               
218-458
               

               
Cow position:
               
chr27:6106685-6106451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
219-432
               

               
Cow position:
               
chr27:10323821-10323616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
21, 29
               

               
Conread position:
               
219-454
               

               
Cow position:
               
chr27:19508997-19508766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
67, 54
               

               
Conread position:
               
219-479
               

               
Cow position:
               
chr27:15315501-15315255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
49, 62
               

               
Conread position:
               
219-484
               

               
Cow position:
               
chr27:26245565-26245830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
217, 11
               

               
Conread position:
               
220-417
               

               
Cow position:
               
chr27:26121743-26121545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
53, 146
               

               
Conread position:
               
220-432
               

               
Cow position:
               
chr27:10404133-10404345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
18, 26
               

               
Conread position:
               
220-489
               

               
Cow position:
               
chr27:31170081-31170353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
81, 55
               

               
Conread position:
               
221-434
               

               
Cow position:
               
chr27:7343446-7343658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
46, 125
               

               
Conread position:
               
233-430
               

               
Cow position:
               
chr27:29693447-29693241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 12
               

               
Conread position:
               
238-445
               

               
Cow position:
               
chr27:20612485-20612279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
94, 9
               

               
Conread position:
               
241-432
               

               
Cow position:
               
chr27:19557347-19557165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
252-611
               

               
Cow position:
               
chr27:11208604-11208967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
11, 29
               

               
Conread position:
               
260-432
               

               
Cow position:
               
chr27:26984102-26983935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
36, 21
               

               
Conread position:
               
262-429
               

               
Cow position:
               
chr27:24709496-24709329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
8, 20
               

               
Conread position:
               
262-438
               

               
Cow position:
               
chr27:26909652-26909823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
11, 20
               

               
Conread position:
               
263-432
               

               
Cow position:
               
chr27:13801749-13801577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
116, 18
               

               
Conread position:
               
264-478
               

               
Cow position:
               
chr27:21419251-21419454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
15, 92
               

               
Conread position:
               
270-435
               

               
Cow position:
               
chr27:21951048-21951211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
270-465
               

               
Cow position:
               
chr27:26883326-26883521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
165, 157
               

               
Conread position:
               
272-485
               

               
Cow position:
               
chr27:10581462-10581252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
164, 34
               

               
Conread position:
               
279-457
               

               
Cow position:
               
chr27:31157734-31157562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
280-470
               

               
Cow position:
               
chr27:28015811-28015997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
86, 78
               

               
Conread position:
               
281-417
               

               
Cow position:
               
chr27:17908339-17908474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
281-422
               

               
Cow position:
               
chr27:23060193-23060334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
281-431
               

               
Cow position:
               
chr27:31183496-31183344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
281-432
               

               
Cow position:
               
chr27:26118420-26118269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
281-432
               

               
Cow position:
               
chr27:29160061-29160212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
281-438
               

               
Cow position:
               
chr27:232474-232316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
281-447
               

               
Cow position:
               
chr27:23177392-23177554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
281-470
               

               
Cow position:
               
chr27:26481275-26481463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
121, 28
               

               
Conread position:
               
281-478
               

               
Cow position:
               
chr27:22583667-22583471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
82, 159
               

               
Conread position:
               
283-432
               

               
Cow position:
               
chr27:178781-178635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
283-469
               

               
Cow position:
               
chr27:24303865-24303675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
96, 164
               

               
Conread position:
               
286-463
               

               
Cow position:
               
chr27:25000045-25000227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
287-417
               

               
Cow position:
               
chr27:26317980-26317850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
288-434
               

               
Cow position:
               
chr27:26625122-26624977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
292-432
               

               
Cow position:
               
chr27:26314214-26314353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
292-470
               

               
Cow position:
               
chr27:21101381-21101561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
144, 62
               

               
Conread position:
               
296-464
               

               
Cow position:
               
chr27:21054365-21054198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
298-470
               

               
Cow position:
               
chr27:27012602-27012429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
448-646
               

               
Cow position:
               
chr27:17875189-17875388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
166, 56
               

               
Conread position:
               
467-588
               

               
Cow position:
               
chr27:13977612-13977731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
467-612
               

               
Cow position:
               
chr27:19083784-19083926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
468-608
               

               
Cow position:
               
chr27:11746521-11746383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
468-610
               

               
Cow position:
               
chr27:24509752-24509618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
468-612
               

               
Cow position:
               
chr27:19543987-19544129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
64, 71
               

               
Conread position:
               
468-612
               

               
Cow position:
               
chr27:29039008-29039149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
468-638
               

               
Cow position:
               
chr27:26441116-26441285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
156, 11
               

               
Conread position:
               
468-639
               

               
Cow position:
               
chr27:21578641-21578810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
468-643
               

               
Cow position:
               
chr27:6883967-6883796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
156, 105
               

               
Conread position:
               
468-647
               

               
Cow position:
               
chr27:13958411-13958588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
156, 44
               

               
Conread position:
               
469-611
               

               
Cow position:
               
chr27:26299774-26299638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
469-612
               

               
Cow position:
               
chr27:8430506-8430648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
472-612
               

               
Cow position:
               
chr27:1899643-1899780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
472-612
               

               
Cow position:
               
chr27:27049982-27050114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
475-626
               

               
Cow position:
               
chr27:23662667-23662816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
475-636
               

               
Cow position:
               
chr27:25880028-25879865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
139, 37
               

               
Conread position:
               
475-644
               

               
Cow position:
               
chr27:13005773-13005604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
139, 29
               

               
Conread position:
               
484-641
               

               
Cow position:
               
chr27:23147610-23147454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
89, 0
               
Show alignments to all cow chromosomes.