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Cow genome map

           
Conread name:
           
Ss1.1-Mixc-0025o19.5
        

               
Conread position:
               
18-197
               

               
Cow position:
               
chr6:52705894-52705723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
101, 59
               

               
Conread position:
               
19-194
               

               
Cow position:
               
chr6:50020354-50020533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
20-333
               

               
Cow position:
               
chr6:899465-899165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
259, 58
               

               
Conread position:
               
26-432
               

               
Cow position:
               
chr6:41733456-41733859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
11, 54
               

               
Conread position:
               
29-380
               

               
Cow position:
               
chr6:37199704-37199365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 12
               

               
Conread position:
               
29-470
               

               
Cow position:
               
chr6:67430057-67429603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 166
               

               
Conread position:
               
32-363
               

               
Cow position:
               
chr6:9452936-9452612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
49, 138
               

               
Conread position:
               
33-418
               

               
Cow position:
               
chr6:1770361-1769984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
54, 113
               

               
Conread position:
               
34-207
               

               
Cow position:
               
chr6:389008-389183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
5, 44
               

               
Conread position:
               
34-207
               

               
Cow position:
               
chr6:40264358-40264189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
85, 41
               

               
Conread position:
               
35-217
               

               
Cow position:
               
chr6:46292498-46292328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
84, 34
               

               
Conread position:
               
35-438
               

               
Cow position:
               
chr6:39093584-39093976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 42
               

               
Conread position:
               
35-457
               

               
Cow position:
               
chr6:11246604-11247015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 31
               

               
Conread position:
               
35-475
               

               
Cow position:
               
chr6:7128560-7128140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
121, 41
               

               
Conread position:
               
36-201
               

               
Cow position:
               
chr6:62324832-62324996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
83, 41
               

               
Conread position:
               
36-451
               

               
Cow position:
               
chr6:19446101-19446496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 33
               

               
Conread position:
               
36-464
               

               
Cow position:
               
chr6:6400789-6401215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
35, 72
               

               
Conread position:
               
37-186
               

               
Cow position:
               
chr6:25358912-25359062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
34, 101
               

               
Conread position:
               
38-161
               

               
Cow position:
               
chr6:59301982-59301857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
38-169
               

               
Cow position:
               
chr6:21534902-21535027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
81, 31
               

               
Conread position:
               
38-169
               

               
Cow position:
               
chr6:33918008-33917880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
39, 101
               

               
Conread position:
               
38-178
               

               
Cow position:
               
chr6:26450160-26450297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 101
               

               
Conread position:
               
38-179
               

               
Cow position:
               
chr6:1703657-1703799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
38-180
               

               
Cow position:
               
chr6:21311915-21311766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
38-182
               

               
Cow position:
               
chr6:1783930-1783793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
33, 40
               

               
Conread position:
               
38-191
               

               
Cow position:
               
chr6:54885070-54884917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
81, 37
               

               
Conread position:
               
38-195
               

               
Cow position:
               
chr6:7103393-7103232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
38-195
               

               
Cow position:
               
chr6:9839005-9839167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-196
               

               
Cow position:
               
chr6:16737863-16738018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
88, 39
               

               
Conread position:
               
38-196
               

               
Cow position:
               
chr6:39994618-39994463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
35, 107
               

               
Conread position:
               
38-197
               

               
Cow position:
               
chr6:28477025-28477177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
38-198
               

               
Cow position:
               
chr6:32987155-32986998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
39, 61
               

               
Conread position:
               
38-198
               

               
Cow position:
               
chr6:52248292-52248131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
40, 152
               

               
Conread position:
               
38-198
               

               
Cow position:
               
chr6:53453611-53453772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
88, 39
               

               
Conread position:
               
38-199
               

               
Cow position:
               
chr6:60239549-60239391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
83, 137
               

               
Conread position:
               
38-199
               

               
Cow position:
               
chr6:62925150-62924995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
157, 39
               

               
Conread position:
               
38-199
               

               
Cow position:
               
chr6:68049278-68049433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
83, 39
               

               
Conread position:
               
38-200
               

               
Cow position:
               
chr6:10332253-10332088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
39, 71
               

               
Conread position:
               
38-200
               

               
Cow position:
               
chr6:31564490-31564337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
38-200
               

               
Cow position:
               
chr6:54492616-54492451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
39, 138
               

               
Conread position:
               
38-200
               

               
Cow position:
               
chr6:61130639-61130475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
38-200
               

               
Cow position:
               
chr6:64449232-64449394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
81, 38
               

               
Conread position:
               
38-201
               

               
Cow position:
               
chr6:642734-642562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
39, 154
               

               
Conread position:
               
38-201
               

               
Cow position:
               
chr6:17090438-17090602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
38-201
               

               
Cow position:
               
chr6:32210784-32210625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
38-201
               

               
Cow position:
               
chr6:57164270-57164430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
81, 21
               

               
Conread position:
               
38-202
               

               
Cow position:
               
chr6:8318321-8318159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
109, 39
               

               
Conread position:
               
38-202
               

               
Cow position:
               
chr6:10695710-10695871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
38, 108
               

               
Conread position:
               
38-202
               

               
Cow position:
               
chr6:15923156-15922995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
38-202
               

               
Cow position:
               
chr6:24327295-24327137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
81, 28
               

               
Conread position:
               
38-202
               

               
Cow position:
               
chr6:28318252-28318408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
38-202
               

               
Cow position:
               
chr6:48344171-48344336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
38-202
               

               
Cow position:
               
chr6:50445920-50445756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
70, 39
               

               
Conread position:
               
38-202
               

               
Cow position:
               
chr6:53731364-53731526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
88, 39
               

               
Conread position:
               
38-202
               

               
Cow position:
               
chr6:54293954-54294112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
85, 39
               

               
Conread position:
               
38-202
               

               
Cow position:
               
chr6:54807066-54807232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
39, 147
               

               
Conread position:
               
38-202
               

               
Cow position:
               
chr6:57405282-57405119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
86, 34
               

               
Conread position:
               
38-202
               

               
Cow position:
               
chr6:67304644-67304807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
39, 90
               

               
Conread position:
               
38-204
               

               
Cow position:
               
chr6:46400562-46400406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
84, 40
               

               
Conread position:
               
38-210
               

               
Cow position:
               
chr6:30826193-30826020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
39, 18
               

               
Conread position:
               
38-211
               

               
Cow position:
               
chr6:44098927-44099101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
68, 39
               

               
Conread position:
               
38-211
               

               
Cow position:
               
chr6:44984169-44984343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
38-211
               

               
Cow position:
               
chr6:53139086-53138910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
39, 163
               

               
Conread position:
               
38-213
               

               
Cow position:
               
chr6:607105-607275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
39, 111
               

               
Conread position:
               
38-213
               

               
Cow position:
               
chr6:5958180-5958011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
43, 98
               

               
Conread position:
               
38-216
               

               
Cow position:
               
chr6:40834630-40834451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
38-217
               

               
Cow position:
               
chr6:21110813-21110985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
92, 39
               

               
Conread position:
               
38-217
               

               
Cow position:
               
chr6:24515350-24515180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
38-217
               

               
Cow position:
               
chr6:34075862-34076047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
81, 26
               

               
Conread position:
               
38-217
               

               
Cow position:
               
chr6:47540369-47540550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
33, 115
               

               
Conread position:
               
38-217
               

               
Cow position:
               
chr6:61137214-61137393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
39, 92
               

               
Conread position:
               
38-217
               

               
Cow position:
               
chr6:66304004-66303823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
75, 39
               

               
Conread position:
               
38-220
               

               
Cow position:
               
chr6:67968771-67968591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
38, 107
               

               
Conread position:
               
38-233
               

               
Cow position:
               
chr6:48425478-48425284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
81, 33
               

               
Conread position:
               
38-241
               

               
Cow position:
               
chr6:58364169-58363968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
159, 47
               

               
Conread position:
               
38-256
               

               
Cow position:
               
chr6:36928494-36928710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
20, 44
               

               
Conread position:
               
38-256
               

               
Cow position:
               
chr6:52025811-52025601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
84, 39
               

               
Conread position:
               
38-257
               

               
Cow position:
               
chr6:33276882-33277100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
39, 7
               

               
Conread position:
               
38-298
               

               
Cow position:
               
chr6:24961988-24962238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
40, 81
               

               
Conread position:
               
38-305
               

               
Cow position:
               
chr6:25008557-25008819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
180, 39
               

               
Conread position:
               
38-311
               

               
Cow position:
               
chr6:130322-130057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
40, 128
               

               
Conread position:
               
38-314
               

               
Cow position:
               
chr6:12543090-12542821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
237, 39
               

               
Conread position:
               
38-320
               

               
Cow position:
               
chr6:38614667-38614927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
38-332
               

               
Cow position:
               
chr6:23248120-23247839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
37, 110
               

               
Conread position:
               
38-335
               

               
Cow position:
               
chr6:7989573-7989285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
39, 139
               

               
Conread position:
               
38-346
               

               
Cow position:
               
chr6:47640594-47640290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
34, 159
               

               
Conread position:
               
38-349
               

               
Cow position:
               
chr6:1886820-1886523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
88, 29
               

               
Conread position:
               
38-349
               

               
Cow position:
               
chr6:4864697-4864403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
196, 28
               

               
Conread position:
               
38-355
               

               
Cow position:
               
chr6:8788194-8787887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
39, 54
               

               
Conread position:
               
38-355
               

               
Cow position:
               
chr6:36470720-36470412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-356
               

               
Cow position:
               
chr6:16706850-16707163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
87, 29
               

               
Conread position:
               
38-361
               

               
Cow position:
               
chr6:28977186-28976884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
244, 39
               

               
Conread position:
               
38-361
               

               
Cow position:
               
chr6:42565528-42565843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 63
               

               
Conread position:
               
38-361
               

               
Cow position:
               
chr6:46865750-46865436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
89, 39
               

               
Conread position:
               
38-366
               

               
Cow position:
               
chr6:30973884-30974197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
39, 102
               

               
Conread position:
               
38-366
               

               
Cow position:
               
chr6:66131151-66131465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
81, 26
               

               
Conread position:
               
38-368
               

               
Cow position:
               
chr6:47574748-47575069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
101, 40
               

               
Conread position:
               
38-372
               

               
Cow position:
               
chr6:6098439-6098099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
117, 39
               

               
Conread position:
               
38-372
               

               
Cow position:
               
chr6:7190276-7189955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-372
               

               
Cow position:
               
chr6:14958506-14958175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
43, 169
               

               
Conread position:
               
38-372
               

               
Cow position:
               
chr6:21869802-21869482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
231, 40
               

               
Conread position:
               
38-373
               

               
Cow position:
               
chr6:35471680-35471342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 260
               

               
Conread position:
               
38-379
               

               
Cow position:
               
chr6:54867353-54867691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 56
               

               
Conread position:
               
38-380
               

               
Cow position:
               
chr6:47799141-47799468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
87, 20
               

               
Conread position:
               
38-381
               

               
Cow position:
               
chr6:16764799-16764470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
205, 39
               

               
Conread position:
               
38-381
               

               
Cow position:
               
chr6:35993420-35993759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
37, 140
               

               
Conread position:
               
38-382
               

               
Cow position:
               
chr6:25407549-25407215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
90, 39
               

               
Conread position:
               
38-382
               

               
Cow position:
               
chr6:67214584-67214925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
40, 20
               

               
Conread position:
               
38-384
               

               
Cow position:
               
chr6:61515355-61515014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
70, 42
               

               
Conread position:
               
38-387
               

               
Cow position:
               
chr6:36652262-36652599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
202, 42
               

               
Conread position:
               
38-392
               

               
Cow position:
               
chr6:61113593-61113954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
39, 146
               

               
Conread position:
               
38-393
               

               
Cow position:
               
chr6:53519780-53519437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
86, 39
               

               
Conread position:
               
38-400
               

               
Cow position:
               
chr6:40713659-40713317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
40, 54
               

               
Conread position:
               
38-407
               

               
Cow position:
               
chr6:28482858-28483216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 162
               

               
Conread position:
               
38-408
               

               
Cow position:
               
chr6:17334214-17333850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
81, 48
               

               
Conread position:
               
38-416
               

               
Cow position:
               
chr6:27888191-27888555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 61
               

               
Conread position:
               
38-417
               

               
Cow position:
               
chr6:50577363-50577727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
40, 162
               

               
Conread position:
               
38-420
               

               
Cow position:
               
chr6:23695840-23696211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 40
               

               
Conread position:
               
38-421
               

               
Cow position:
               
chr6:57546373-57546013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
40, 31
               

               
Conread position:
               
38-422
               

               
Cow position:
               
chr6:2607456-2607822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
38-422
               

               
Cow position:
               
chr6:35842500-35842874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 25
               

               
Conread position:
               
38-422
               

               
Cow position:
               
chr6:38641341-38641708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
38-422
               

               
Cow position:
               
chr6:52412697-52413076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 164
               

               
Conread position:
               
38-422
               

               
Cow position:
               
chr6:60859463-60859084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
39, 160
               

               
Conread position:
               
38-425
               

               
Cow position:
               
chr6:19695649-19696026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 38
               

               
Conread position:
               
38-426
               

               
Cow position:
               
chr6:40774505-40774117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
111, 37
               

               
Conread position:
               
38-427
               

               
Cow position:
               
chr6:19012912-19013283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-430
               

               
Cow position:
               
chr6:53178480-53178848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
88, 47
               

               
Conread position:
               
38-431
               

               
Cow position:
               
chr6:16765549-16765175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
88, 31
               

               
Conread position:
               
38-431
               

               
Cow position:
               
chr6:28148094-28148487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
69, 39
               

               
Conread position:
               
38-431
               

               
Cow position:
               
chr6:61631770-61631385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 170
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr6:4383335-4383698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
234, 31
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr6:5114204-5113823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 39
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr6:5609597-5609218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
324, 40
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr6:10176460-10176075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 54
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr6:12092141-12091762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
230, 30
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr6:15938010-15937628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 56
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr6:21231379-21231736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
219, 41
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr6:24031218-24031587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
40, 126
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr6:24781721-24781327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 173
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr6:39358498-39358119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
111, 40
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr6:44078364-44078739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
202, 38
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr6:47305182-47305566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr6:51835243-51835622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 41
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr6:54647679-54647275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
21, 27
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr6:56849861-56850241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
213, 26
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr6:60819358-60819739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr6:67950802-67951181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
323, 31
               

               
Conread position:
               
38-450
               

               
Cow position:
               
chr6:37149036-37149425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-451
               

               
Cow position:
               
chr6:8965932-8966331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 93
               

               
Conread position:
               
38-451
               

               
Cow position:
               
chr6:15305425-15305816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
398, 29
               

               
Conread position:
               
38-451
               

               
Cow position:
               
chr6:17997472-17997073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-451
               

               
Cow position:
               
chr6:66363401-66362993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-455
               

               
Cow position:
               
chr6:120082-120485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 82
               

               
Conread position:
               
38-457
               

               
Cow position:
               
chr6:38441025-38441425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
235, 39
               

               
Conread position:
               
38-460
               

               
Cow position:
               
chr6:54430662-54431085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
39, 159
               

               
Conread position:
               
38-462
               

               
Cow position:
               
chr6:15447365-15446942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 170
               

               
Conread position:
               
38-468
               

               
Cow position:
               
chr6:8125175-8125584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 37
               

               
Conread position:
               
38-469
               

               
Cow position:
               
chr6:63252080-63251665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
95, 39
               

               
Conread position:
               
38-470
               

               
Cow position:
               
chr6:6201284-6201697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
81, 42
               

               
Conread position:
               
38-470
               

               
Cow position:
               
chr6:9008768-9008362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
237, 39
               

               
Conread position:
               
38-473
               

               
Cow position:
               
chr6:12668950-12669365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 31
               

               
Conread position:
               
38-473
               

               
Cow position:
               
chr6:21587578-21587168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
37, 130
               

               
Conread position:
               
38-476
               

               
Cow position:
               
chr6:16700102-16700522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
87, 39
               

               
Conread position:
               
38-476
               

               
Cow position:
               
chr6:18988059-18988461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
135, 39
               

               
Conread position:
               
38-477
               

               
Cow position:
               
chr6:18447666-18447248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 53
               

               
Conread position:
               
38-477
               

               
Cow position:
               
chr6:44566255-44566695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
43, 163
               

               
Conread position:
               
38-478
               

               
Cow position:
               
chr6:7539417-7539845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
38-478
               

               
Cow position:
               
chr6:20157168-20157600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 161
               

               
Conread position:
               
38-478
               

               
Cow position:
               
chr6:21004499-21004950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
38, 141
               

               
Conread position:
               
38-485
               

               
Cow position:
               
chr6:35181410-35180983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 39
               

               
Conread position:
               
38-486
               

               
Cow position:
               
chr6:60783713-60784144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
81, 41
               

               
Conread position:
               
38-489
               

               
Cow position:
               
chr6:3978824-3978365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
33, 55
               

               
Conread position:
               
38-490
               

               
Cow position:
               
chr6:65264692-65264266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
88, 33
               

               
Conread position:
               
39-178
               

               
Cow position:
               
chr6:50119943-50119806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
80, 38
               

               
Conread position:
               
39-195
               

               
Cow position:
               
chr6:57274313-57274464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
80, 39
               

               
Conread position:
               
39-201
               

               
Cow position:
               
chr6:12629868-12630028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
87, 38
               

               
Conread position:
               
39-202
               

               
Cow position:
               
chr6:12500704-12500862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
38, 60
               

               
Conread position:
               
39-202
               

               
Cow position:
               
chr6:49604526-49604680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
39-202
               

               
Cow position:
               
chr6:59108786-59108949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
91, 25
               

               
Conread position:
               
39-206
               

               
Cow position:
               
chr6:3929163-3929327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
161, 32
               

               
Conread position:
               
39-213
               

               
Cow position:
               
chr6:58076068-58076243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
77, 38
               

               
Conread position:
               
39-217
               

               
Cow position:
               
chr6:20230982-20230809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
92, 38
               

               
Conread position:
               
39-233
               

               
Cow position:
               
chr6:633517-633317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
39-256
               

               
Cow position:
               
chr6:21542164-21542372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
39-331
               

               
Cow position:
               
chr6:55763698-55763977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
80, 38
               

               
Conread position:
               
39-355
               

               
Cow position:
               
chr6:34196304-34195999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
274, 30
               

               
Conread position:
               
39-361
               

               
Cow position:
               
chr6:52901085-52901394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
218, 15
               

               
Conread position:
               
39-382
               

               
Cow position:
               
chr6:16423543-16423883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
39, 60
               

               
Conread position:
               
39-396
               

               
Cow position:
               
chr6:38218516-38218858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
233, 40
               

               
Conread position:
               
39-409
               

               
Cow position:
               
chr6:3464128-3464498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
39, 173
               

               
Conread position:
               
39-421
               

               
Cow position:
               
chr6:50984068-50984438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 53
               

               
Conread position:
               
39-422
               

               
Cow position:
               
chr6:60473979-60474349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
148, 38
               

               
Conread position:
               
39-430
               

               
Cow position:
               
chr6:60739859-60740232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
84, 38
               

               
Conread position:
               
39-432
               

               
Cow position:
               
chr6:44194701-44194329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
42, 32
               

               
Conread position:
               
39-442
               

               
Cow position:
               
chr6:50746824-50747234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
48, 261
               

               
Conread position:
               
39-467
               

               
Cow position:
               
chr6:323465-323047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
39, 121
               

               
Conread position:
               
39-478
               

               
Cow position:
               
chr6:64431783-64432204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 38
               

               
Conread position:
               
39-485
               

               
Cow position:
               
chr6:53933004-53932575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 53
               

               
Conread position:
               
40-162
               

               
Cow position:
               
chr6:47989030-47989149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
40-200
               

               
Cow position:
               
chr6:415939-416101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
40-201
               

               
Cow position:
               
chr6:54369055-54368898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
79, 37
               

               
Conread position:
               
40-202
               

               
Cow position:
               
chr6:14850869-14850710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
79, 37
               

               
Conread position:
               
40-202
               

               
Cow position:
               
chr6:45160447-45160290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
40-208
               

               
Cow position:
               
chr6:61575448-61575619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
37, 99
               

               
Conread position:
               
40-213
               

               
Cow position:
               
chr6:8804683-8804515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
40-213
               

               
Cow position:
               
chr6:14839185-14839011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
38, 147
               

               
Conread position:
               
40-217
               

               
Cow position:
               
chr6:53710961-53711133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
37, 49
               

               
Conread position:
               
40-219
               

               
Cow position:
               
chr6:16411040-16411212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
79, 37
               

               
Conread position:
               
40-256
               

               
Cow position:
               
chr6:58173028-58173234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
37, 26
               

               
Conread position:
               
40-284
               

               
Cow position:
               
chr6:18961678-18961440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
38, 14
               

               
Conread position:
               
40-318
               

               
Cow position:
               
chr6:22503078-22502798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
37, 168
               

               
Conread position:
               
40-350
               

               
Cow position:
               
chr6:37634634-37634940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
200, 37
               

               
Conread position:
               
40-350
               

               
Cow position:
               
chr6:60350454-60350147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
37, 166
               

               
Conread position:
               
40-356
               

               
Cow position:
               
chr6:528432-528133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
38, 89
               

               
Conread position:
               
40-361
               

               
Cow position:
               
chr6:63047421-63047748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
27, 36
               

               
Conread position:
               
40-362
               

               
Cow position:
               
chr6:11169548-11169860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
14, 39
               

               
Conread position:
               
40-362
               

               
Cow position:
               
chr6:53651886-53652197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
217, 40
               

               
Conread position:
               
40-373
               

               
Cow position:
               
chr6:16191511-16191839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
37, 19
               

               
Conread position:
               
40-380
               

               
Cow position:
               
chr6:47339503-47339181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
200, 29
               

               
Conread position:
               
40-417
               

               
Cow position:
               
chr6:5095705-5095330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 29
               

               
Conread position:
               
40-417
               

               
Cow position:
               
chr6:8562561-8562927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
37, 165
               

               
Conread position:
               
40-422
               

               
Cow position:
               
chr6:58732469-58732086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
31, 162
               

               
Conread position:
               
40-425
               

               
Cow position:
               
chr6:445156-445545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 171
               

               
Conread position:
               
40-431
               

               
Cow position:
               
chr6:65870869-65871254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 167
               

               
Conread position:
               
40-432
               

               
Cow position:
               
chr6:14914394-14914010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 27
               

               
Conread position:
               
40-432
               

               
Cow position:
               
chr6:38771139-38771495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
40-432
               

               
Cow position:
               
chr6:47355669-47356050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
200, 37
               

               
Conread position:
               
40-432
               

               
Cow position:
               
chr6:53460727-53460347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
250, 38
               

               
Conread position:
               
40-445
               

               
Cow position:
               
chr6:66433793-66434192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
91, 37
               

               
Conread position:
               
40-451
               

               
Cow position:
               
chr6:19755232-19754835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
38, 88
               

               
Conread position:
               
40-462
               

               
Cow position:
               
chr6:15300972-15300590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
18, 31
               

               
Conread position:
               
40-471
               

               
Cow position:
               
chr6:33302257-33302656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
79, 37
               

               
Conread position:
               
40-474
               

               
Cow position:
               
chr6:32867361-32866959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
291, 36
               

               
Conread position:
               
40-478
               

               
Cow position:
               
chr6:3952367-3952790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 37
               

               
Conread position:
               
41-191
               

               
Cow position:
               
chr6:57298866-57299011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
78, 28
               

               
Conread position:
               
41-217
               

               
Cow position:
               
chr6:49685431-49685603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
41-349
               

               
Cow position:
               
chr6:31525894-31526190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
37, 70
               

               
Conread position:
               
41-382
               

               
Cow position:
               
chr6:54864821-54864483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 28
               

               
Conread position:
               
41-464
               

               
Cow position:
               
chr6:27851859-27851451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
78, 36
               

               
Conread position:
               
41-471
               

               
Cow position:
               
chr6:3595640-3596057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
78, 36
               

               
Conread position:
               
42-201
               

               
Cow position:
               
chr6:2012866-2013022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
103, 35
               

               
Conread position:
               
42-206
               

               
Cow position:
               
chr6:58073892-58074055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
36, 19
               

               
Conread position:
               
42-207
               

               
Cow position:
               
chr6:42961520-42961351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
35, 126
               

               
Conread position:
               
42-256
               

               
Cow position:
               
chr6:6460386-6460591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
36, 157
               

               
Conread position:
               
42-320
               

               
Cow position:
               
chr6:61608354-61608627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
36, 162
               

               
Conread position:
               
42-348
               

               
Cow position:
               
chr6:20098117-20097816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
215, 35
               

               
Conread position:
               
42-351
               

               
Cow position:
               
chr6:56843006-56843300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
284, 33
               

               
Conread position:
               
42-362
               

               
Cow position:
               
chr6:54991155-54990844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
223, 38
               

               
Conread position:
               
42-366
               

               
Cow position:
               
chr6:60057809-60057498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
77, 35
               

               
Conread position:
               
42-406
               

               
Cow position:
               
chr6:1499485-1499845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
36, 55
               

               
Conread position:
               
42-409
               

               
Cow position:
               
chr6:8637122-8637478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 37
               

               
Conread position:
               
42-417
               

               
Cow position:
               
chr6:10106149-10105771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 183
               

               
Conread position:
               
42-417
               

               
Cow position:
               
chr6:19264653-19264289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 155
               

               
Conread position:
               
42-417
               

               
Cow position:
               
chr6:45690746-45690406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
36, 106
               

               
Conread position:
               
42-422
               

               
Cow position:
               
chr6:48281842-48282209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
19, 36
               

               
Conread position:
               
42-431
               

               
Cow position:
               
chr6:13687964-13687593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
235, 33
               

               
Conread position:
               
42-431
               

               
Cow position:
               
chr6:21456843-21456454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
34, 55
               

               
Conread position:
               
42-431
               

               
Cow position:
               
chr6:46465675-46466041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
215, 36
               

               
Conread position:
               
42-432
               

               
Cow position:
               
chr6:12337831-12338214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
76, 35
               

               
Conread position:
               
42-432
               

               
Cow position:
               
chr6:38853811-38853432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 107
               

               
Conread position:
               
42-432
               

               
Cow position:
               
chr6:46860321-46859946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
34, 103
               

               
Conread position:
               
42-432
               

               
Cow position:
               
chr6:54132665-54133035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
209, 22
               

               
Conread position:
               
42-432
               

               
Cow position:
               
chr6:63720046-63720416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
159, 21
               

               
Conread position:
               
42-434
               

               
Cow position:
               
chr6:36196061-36196428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
216, 35
               

               
Conread position:
               
42-462
               

               
Cow position:
               
chr6:13040300-13040703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
36, 106
               

               
Conread position:
               
42-471
               

               
Cow position:
               
chr6:17414604-17414190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
36, 16
               

               
Conread position:
               
42-474
               

               
Cow position:
               
chr6:36202675-36203089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
289, 35
               

               
Conread position:
               
42-474
               

               
Cow position:
               
chr6:51581410-51580989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 88
               

               
Conread position:
               
42-475
               

               
Cow position:
               
chr6:52478580-52478142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 166
               

               
Conread position:
               
43-172
               

               
Cow position:
               
chr6:46666950-46667086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
43-202
               

               
Cow position:
               
chr6:7824608-7824767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
34, 106
               

               
Conread position:
               
45-167
               

               
Cow position:
               
chr6:37783268-37783389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
74, 34
               

               
Conread position:
               
45-180
               

               
Cow position:
               
chr6:7694505-7694366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
45-200
               

               
Cow position:
               
chr6:60456681-60456828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
33, 48
               

               
Conread position:
               
45-212
               

               
Cow position:
               
chr6:67574257-67574417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
32, 62
               

               
Conread position:
               
45-216
               

               
Cow position:
               
chr6:18968925-18968762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
45-368
               

               
Cow position:
               
chr6:59069778-59069457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
32, 128
               

               
Conread position:
               
45-394
               

               
Cow position:
               
chr6:48112054-48112382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
212, 31
               

               
Conread position:
               
45-412
               

               
Cow position:
               
chr6:58370594-58370951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
32, 19
               

               
Conread position:
               
45-425
               

               
Cow position:
               
chr6:4692134-4691748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 165
               

               
Conread position:
               
45-430
               

               
Cow position:
               
chr6:6264495-6264874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
168, 24
               

               
Conread position:
               
45-432
               

               
Cow position:
               
chr6:15242682-15243063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 101
               

               
Conread position:
               
45-432
               

               
Cow position:
               
chr6:24468547-24468175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
33, 207
               

               
Conread position:
               
45-432
               

               
Cow position:
               
chr6:29484940-29485307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
174, 33
               

               
Conread position:
               
45-432
               

               
Cow position:
               
chr6:38207646-38207262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 144
               

               
Conread position:
               
45-432
               

               
Cow position:
               
chr6:49398766-49398405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
33, 24
               

               
Conread position:
               
45-451
               

               
Cow position:
               
chr6:31535721-31535330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 101
               

               
Conread position:
               
45-452
               

               
Cow position:
               
chr6:49421929-49421551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
237, 27
               

               
Conread position:
               
45-479
               

               
Cow position:
               
chr6:47519896-47520323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
33, 154
               

               
Conread position:
               
45-496
               

               
Cow position:
               
chr6:46557906-46558344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
68, 27
               

               
Conread position:
               
46-200
               

               
Cow position:
               
chr6:31635834-31635690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
46-350
               

               
Cow position:
               
chr6:12551117-12551415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
32, 105
               

               
Conread position:
               
46-407
               

               
Cow position:
               
chr6:2547091-2547454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 119
               

               
Conread position:
               
46-417
               

               
Cow position:
               
chr6:26915181-26915537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
25, 33
               

               
Conread position:
               
46-427
               

               
Cow position:
               
chr6:15243102-15243481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
14, 103
               

               
Conread position:
               
46-463
               

               
Cow position:
               
chr6:48988284-48988683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
25, 18
               

               
Conread position:
               
46-466
               

               
Cow position:
               
chr6:6965534-6965135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
213, 31
               

               
Conread position:
               
46-469
               

               
Cow position:
               
chr6:9219124-9219526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
73, 31
               

               
Conread position:
               
46-478
               

               
Cow position:
               
chr6:32121762-32122160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 32
               

               
Conread position:
               
47-201
               

               
Cow position:
               
chr6:65904416-65904270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
81, 30
               

               
Conread position:
               
47-432
               

               
Cow position:
               
chr6:53024942-53024587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
157, 31
               

               
Conread position:
               
47-451
               

               
Cow position:
               
chr6:46283146-46282753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
157, 31
               

               
Conread position:
               
47-459
               

               
Cow position:
               
chr6:65903765-65903374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
81, 30
               

               
Conread position:
               
47-469
               

               
Cow position:
               
chr6:17313582-17313996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 136
               

               
Conread position:
               
48-409
               

               
Cow position:
               
chr6:57571326-57571679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
30, 158
               

               
Conread position:
               
48-412
               

               
Cow position:
               
chr6:17817132-17816787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
71, 21
               

               
Conread position:
               
49-373
               

               
Cow position:
               
chr6:16316160-16316484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
28, 47
               

               
Conread position:
               
50-202
               

               
Cow position:
               
chr6:602948-603095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
91, 27
               

               
Conread position:
               
50-213
               

               
Cow position:
               
chr6:19351299-19351141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
50-361
               

               
Cow position:
               
chr6:19681672-19681369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
27, 102
               

               
Conread position:
               
50-373
               

               
Cow position:
               
chr6:582412-582105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
219, 25
               

               
Conread position:
               
51-213
               

               
Cow position:
               
chr6:66453654-66453814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
51-398
               

               
Cow position:
               
chr6:40032045-40032377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 121
               

               
Conread position:
               
51-470
               

               
Cow position:
               
chr6:54365472-54365068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 26
               

               
Conread position:
               
52-398
               

               
Cow position:
               
chr6:4559446-4559124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
67, 25
               

               
Conread position:
               
52-431
               

               
Cow position:
               
chr6:13367150-13367505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
52-432
               

               
Cow position:
               
chr6:19996477-19996839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
19, 26
               

               
Conread position:
               
53-185
               

               
Cow position:
               
chr6:50509536-50509663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
66, 24
               

               
Conread position:
               
53-432
               

               
Cow position:
               
chr6:38609826-38610198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
77, 24
               

               
Conread position:
               
54-422
               

               
Cow position:
               
chr6:16746195-16746560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
23, 148
               

               
Conread position:
               
54-423
               

               
Cow position:
               
chr6:67187544-67187896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 45
               

               
Conread position:
               
54-461
               

               
Cow position:
               
chr6:4468614-4469021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
23, 43
               

               
Conread position:
               
55-202
               

               
Cow position:
               
chr6:28156286-28156145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
56, 22
               

               
Conread position:
               
57-451
               

               
Cow position:
               
chr6:48803779-48803397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
20, 151
               

               
Conread position:
               
57-466
               

               
Cow position:
               
chr6:43135082-43134682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
55, 20
               

               
Conread position:
               
58-217
               

               
Cow position:
               
chr6:358031-357870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
19, 149
               

               
Conread position:
               
59-432
               

               
Cow position:
               
chr6:60118010-60118366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
64, 21
               

               
Conread position:
               
60-328
               

               
Cow position:
               
chr6:54936438-54936702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
12, 142
               

               
Conread position:
               
60-422
               

               
Cow position:
               
chr6:21399892-21399540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
27, 117
               

               
Conread position:
               
60-470
               

               
Cow position:
               
chr6:30123327-30122909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
62, 17
               

               
Conread position:
               
62-417
               

               
Cow position:
               
chr6:38640094-38640443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
16, 166
               

               
Conread position:
               
64-190
               

               
Cow position:
               
chr6:32269010-32268884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
69-200
               

               
Cow position:
               
chr6:60667291-60667422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
8, 25
               

               
Conread position:
               
69-471
               

               
Cow position:
               
chr6:53841629-53841245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
17, 76
               

               
Conread position:
               
74-211
               

               
Cow position:
               
chr6:54287948-54288086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
51, 124
               

               
Conread position:
               
74-400
               

               
Cow position:
               
chr6:21590569-21590897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
106, 24
               

               
Conread position:
               
76-211
               

               
Cow position:
               
chr6:45065136-45065003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
76-424
               

               
Cow position:
               
chr6:16266597-16266945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
43, 146
               

               
Conread position:
               
80-314
               

               
Cow position:
               
chr6:20206158-20206384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
50, 117
               

               
Conread position:
               
80-356
               

               
Cow position:
               
chr6:66874233-66874500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
159, 30
               

               
Conread position:
               
80-363
               

               
Cow position:
               
chr6:54573125-54573418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
49, 211
               

               
Conread position:
               
80-425
               

               
Cow position:
               
chr6:32287520-32287848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
39, 49
               

               
Conread position:
               
80-470
               

               
Cow position:
               
chr6:35725977-35726348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
50, 120
               

               
Conread position:
               
80-472
               

               
Cow position:
               
chr6:50467017-50467398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
39, 103
               

               
Conread position:
               
81-201
               

               
Cow position:
               
chr6:10225756-10225638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
81-202
               

               
Cow position:
               
chr6:12845262-12845390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
81-256
               

               
Cow position:
               
chr6:11192583-11192415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
44, 50
               

               
Conread position:
               
81-469
               

               
Cow position:
               
chr6:23402107-23401733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
5, 35
               

               
Conread position:
               
82-381
               

               
Cow position:
               
chr6:58597620-58597328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
191, 83
               

               
Conread position:
               
82-409
               

               
Cow position:
               
chr6:21514735-21514405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
37, 124
               

               
Conread position:
               
86-256
               

               
Cow position:
               
chr6:44127494-44127660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
38, 130
               

               
Conread position:
               
86-422
               

               
Cow position:
               
chr6:55209444-55209774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
33, 108
               

               
Conread position:
               
86-422
               

               
Cow position:
               
chr6:62929384-62929712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
59, 33
               

               
Conread position:
               
86-425
               

               
Cow position:
               
chr6:46173370-46173041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
33, 99
               

               
Conread position:
               
86-432
               

               
Cow position:
               
chr6:10039609-10039950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
45, 78
               

               
Conread position:
               
86-468
               

               
Cow position:
               
chr6:25615214-25614835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
170, 28
               

               
Conread position:
               
86-484
               

               
Cow position:
               
chr6:17704707-17705108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
45, 88
               

               
Conread position:
               
88-356
               

               
Cow position:
               
chr6:35103445-35103177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
13, 120
               

               
Conread position:
               
91-422
               

               
Cow position:
               
chr6:54208246-54207918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
34, 130
               

               
Conread position:
               
92-468
               

               
Cow position:
               
chr6:59603313-59602959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
146, 53
               

               
Conread position:
               
93-380
               

               
Cow position:
               
chr6:66531926-66531647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
147, 89
               

               
Conread position:
               
93-393
               

               
Cow position:
               
chr6:1371335-1371038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
26, 107
               

               
Conread position:
               
93-498
               

               
Cow position:
               
chr6:59718691-59719104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
164, 113
               

               
Conread position:
               
94-432
               

               
Cow position:
               
chr6:29239835-29240156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
25, 113
               

               
Conread position:
               
94-432
               

               
Cow position:
               
chr6:43345550-43345216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
30, 105
               

               
Conread position:
               
95-217
               

               
Cow position:
               
chr6:38233855-38233977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
95-217
               

               
Cow position:
               
chr6:61644939-61644814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
24, 113
               

               
Conread position:
               
95-394
               

               
Cow position:
               
chr6:17549084-17548777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
161, 108
               

               
Conread position:
               
95-412
               

               
Cow position:
               
chr6:59798554-59798858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
27, 73
               

               
Conread position:
               
97-387
               

               
Cow position:
               
chr6:3592300-3592579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
28, 51
               

               
Conread position:
               
98-422
               

               
Cow position:
               
chr6:16261683-16261995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
21, 88
               

               
Conread position:
               
98-431
               

               
Cow position:
               
chr6:27240106-27239781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
272, 108
               

               
Conread position:
               
98-431
               

               
Cow position:
               
chr6:61524301-61523981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
16, 31
               

               
Conread position:
               
98-443
               

               
Cow position:
               
chr6:61269209-61269548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
10, 99
               

               
Conread position:
               
100-425
               

               
Cow position:
               
chr6:9719021-9718700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
32, 5
               

               
Conread position:
               
103-430
               

               
Cow position:
               
chr6:44867636-44867324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
16, 34
               

               
Conread position:
               
110-464
               

               
Cow position:
               
chr6:24110196-24110543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
9, 54
               

               
Conread position:
               
114-409
               

               
Cow position:
               
chr6:2153674-2153395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
84, 15
               

               
Conread position:
               
114-417
               

               
Cow position:
               
chr6:13565000-13565296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 90
               

               
Conread position:
               
116-222
               

               
Cow position:
               
chr6:54365085-54364980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
117-470
               

               
Cow position:
               
chr6:37395488-37395142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 14
               

               
Conread position:
               
119-431
               

               
Cow position:
               
chr6:41375692-41375993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
165, 9
               

               
Conread position:
               
119-439
               

               
Cow position:
               
chr6:55205391-55205076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
138, 77
               

               
Conread position:
               
120-432
               

               
Cow position:
               
chr6:5330337-5330638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
141, 26
               

               
Conread position:
               
120-473
               

               
Cow position:
               
chr6:33509712-33510048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
117, 78
               

               
Conread position:
               
121-451
               

               
Cow position:
               
chr6:22985935-22985618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
79, 124
               

               
Conread position:
               
121-463
               

               
Cow position:
               
chr6:24536618-24536268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
88, 9
               

               
Conread position:
               
125-417
               

               
Cow position:
               
chr6:5845246-5844959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
11, 74
               

               
Conread position:
               
126-428
               

               
Cow position:
               
chr6:6724432-6724729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
58, 5
               

               
Conread position:
               
128-462
               

               
Cow position:
               
chr6:55546247-55545922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
129-362
               

               
Cow position:
               
chr6:39137792-39138032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
68, 122
               

               
Conread position:
               
129-432
               

               
Cow position:
               
chr6:68272512-68272827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
70, 35
               

               
Conread position:
               
129-456
               

               
Cow position:
               
chr6:18118121-18117804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
144, 77
               

               
Conread position:
               
129-468
               

               
Cow position:
               
chr6:24339215-24339545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
146, 22
               

               
Conread position:
               
130-482
               

               
Cow position:
               
chr6:694215-693873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
129, 41
               

               
Conread position:
               
132-431
               

               
Cow position:
               
chr6:67281831-67282116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
115, 62
               

               
Conread position:
               
134-471
               

               
Cow position:
               
chr6:60468173-60468494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
106, 70
               

               
Conread position:
               
140-471
               

               
Cow position:
               
chr6:51530244-51529929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
35, 59
               

               
Conread position:
               
141-462
               

               
Cow position:
               
chr6:7627905-7628225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
104, 65
               

               
Conread position:
               
151-410
               

               
Cow position:
               
chr6:31078919-31078666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
67, 105
               

               
Conread position:
               
151-432
               

               
Cow position:
               
chr6:68816119-68816394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
133, 53
               

               
Conread position:
               
151-444
               

               
Cow position:
               
chr6:2584894-2585177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
122, 75
               

               
Conread position:
               
151-458
               

               
Cow position:
               
chr6:60144246-60143949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
106, 47
               

               
Conread position:
               
151-471
               

               
Cow position:
               
chr6:18608862-18608549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
118, 45
               

               
Conread position:
               
152-470
               

               
Cow position:
               
chr6:3350973-3351287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
113, 132
               

               
Conread position:
               
153-419
               

               
Cow position:
               
chr6:56986691-56986437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
5, 52
               

               
Conread position:
               
153-423
               

               
Cow position:
               
chr6:51539128-51538854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
101, 45
               

               
Conread position:
               
153-472
               

               
Cow position:
               
chr6:2078865-2078558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
115, 45
               

               
Conread position:
               
154-463
               

               
Cow position:
               
chr6:62437370-62437667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
81, 17
               

               
Conread position:
               
154-465
               

               
Cow position:
               
chr6:47958768-47959061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
85, 55
               

               
Conread position:
               
155-458
               

               
Cow position:
               
chr6:67451415-67451123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
85, 15
               

               
Conread position:
               
156-420
               

               
Cow position:
               
chr6:7801436-7801183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
83, 53
               

               
Conread position:
               
173-432
               

               
Cow position:
               
chr6:57089171-57089428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
95, 45
               

               
Conread position:
               
173-478
               

               
Cow position:
               
chr6:50504428-50504723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
96, 25
               

               
Conread position:
               
194-412
               

               
Cow position:
               
chr6:21467275-21467061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
194-432
               

               
Cow position:
               
chr6:12761268-12761504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
44, 34
               

               
Conread position:
               
211-438
               

               
Cow position:
               
chr6:48379609-48379380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
42, 8
               

               
Conread position:
               
212-417
               

               
Cow position:
               
chr6:16380549-16380756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
215-409
               

               
Cow position:
               
chr6:58304421-58304617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
8, 146
               

               
Conread position:
               
215-428
               

               
Cow position:
               
chr6:12928154-12928361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
24, 31
               

               
Conread position:
               
215-432
               

               
Cow position:
               
chr6:21475735-21475949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
46, 77
               

               
Conread position:
               
215-432
               

               
Cow position:
               
chr6:26155155-26155371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
10, 60
               

               
Conread position:
               
215-486
               

               
Cow position:
               
chr6:58725376-58725640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
9, 62
               

               
Conread position:
               
216-432
               

               
Cow position:
               
chr6:48435844-48436054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
219-412
               

               
Cow position:
               
chr6:69153425-69153616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
54, 35
               

               
Conread position:
               
219-432
               

               
Cow position:
               
chr6:61681089-61681302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
56, 137
               

               
Conread position:
               
219-455
               

               
Cow position:
               
chr6:1941820-1941591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
40, 63
               

               
Conread position:
               
219-460
               

               
Cow position:
               
chr6:57079435-57079675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
18, 63
               

               
Conread position:
               
219-464
               

               
Cow position:
               
chr6:63065838-63066092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
53, 130
               

               
Conread position:
               
219-469
               

               
Cow position:
               
chr6:32453397-32453650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
21, 27
               

               
Conread position:
               
220-432
               

               
Cow position:
               
chr6:41014966-41014750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
20, 26
               

               
Conread position:
               
220-434
               

               
Cow position:
               
chr6:42483428-42483641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
17, 26
               

               
Conread position:
               
221-412
               

               
Cow position:
               
chr6:31865112-31865299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
230-470
               

               
Cow position:
               
chr6:8365834-8366080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
10, 16
               

               
Conread position:
               
233-468
               

               
Cow position:
               
chr6:42728672-42728911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
41, 12
               

               
Conread position:
               
233-470
               

               
Cow position:
               
chr6:50771332-50771104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
233-470
               

               
Cow position:
               
chr6:54846253-54846016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
41, 195
               

               
Conread position:
               
238-430
               

               
Cow position:
               
chr6:39414851-39415047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
21, 9
               

               
Conread position:
               
238-432
               

               
Cow position:
               
chr6:66259761-66259961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
35, 9
               

               
Conread position:
               
239-463
               

               
Cow position:
               
chr6:22876898-22876670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
42, 6
               

               
Conread position:
               
248-422
               

               
Cow position:
               
chr6:14263847-14263675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
48, 15
               

               
Conread position:
               
249-432
               

               
Cow position:
               
chr6:15587553-15587368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
256-423
               

               
Cow position:
               
chr6:18440427-18440260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
259-432
               

               
Cow position:
               
chr6:43906631-43906457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
263-425
               

               
Cow position:
               
chr6:61644801-61644639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
7, 19
               

               
Conread position:
               
263-432
               

               
Cow position:
               
chr6:19563428-19563255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
263-432
               

               
Cow position:
               
chr6:35985079-35984910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
7, 19
               

               
Conread position:
               
263-470
               

               
Cow position:
               
chr6:21052392-21052188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 17
               

               
Conread position:
               
263-486
               

               
Cow position:
               
chr6:28562111-28561894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
10, 17
               

               
Conread position:
               
265-432
               

               
Cow position:
               
chr6:3936840-3937011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
26, 12
               

               
Conread position:
               
270-496
               

               
Cow position:
               
chr6:16137706-16137484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
78, 157
               

               
Conread position:
               
276-435
               

               
Cow position:
               
chr6:53811653-53811813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
62, 53
               

               
Conread position:
               
278-470
               

               
Cow position:
               
chr6:62805715-62805908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
173, 158
               

               
Conread position:
               
279-409
               

               
Cow position:
               
chr6:66293558-66293688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
279-417
               

               
Cow position:
               
chr6:36225182-36225319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
279-462
               

               
Cow position:
               
chr6:19936496-19936318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
279-473
               

               
Cow position:
               
chr6:8187116-8186926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
279-481
               

               
Cow position:
               
chr6:36163817-36164014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
279-481
               

               
Cow position:
               
chr6:45159984-45159786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
280-412
               

               
Cow position:
               
chr6:1103664-1103536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
280-431
               

               
Cow position:
               
chr6:8369495-8369647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
280-432
               

               
Cow position:
               
chr6:49685892-49686044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
281-428
               

               
Cow position:
               
chr6:30895916-30895770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
281-432
               

               
Cow position:
               
chr6:62724631-62724782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
281-432
               

               
Cow position:
               
chr6:63182364-63182509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
281-463
               

               
Cow position:
               
chr6:58697556-58697373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
281-466
               

               
Cow position:
               
chr6:15058452-15058634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
163, 99
               

               
Conread position:
               
281-473
               

               
Cow position:
               
chr6:16411686-16411876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
169, 146
               

               
Conread position:
               
281-479
               

               
Cow position:
               
chr6:44544073-44543877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
155, 77
               

               
Conread position:
               
283-402
               

               
Cow position:
               
chr6:58076471-58076590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
283-470
               

               
Cow position:
               
chr6:28559615-28559799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
55, 73
               

               
Conread position:
               
283-476
               

               
Cow position:
               
chr6:54840430-54840236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
99, 149
               

               
Conread position:
               
286-471
               

               
Cow position:
               
chr6:66947741-66947561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
288-478
               

               
Cow position:
               
chr6:36809122-36808940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
64, 71
               

               
Conread position:
               
291-484
               

               
Cow position:
               
chr6:31928722-31928913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
295-425
               

               
Cow position:
               
chr6:16016123-16016252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
295-470
               

               
Cow position:
               
chr6:54828233-54828057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
296-462
               

               
Cow position:
               
chr6:67574478-67574639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
300-471
               

               
Cow position:
               
chr6:23381574-23381400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
368-611
               

               
Cow position:
               
chr6:32809476-32809714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
68, 101
               

               
Conread position:
               
455-640
               

               
Cow position:
               
chr6:58765364-58765183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
459-633
               

               
Cow position:
               
chr6:17349763-17349588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
155, 111
               

               
Conread position:
               
462-627
               

               
Cow position:
               
chr6:47026534-47026700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
152, 109
               

               
Conread position:
               
462-642
               

               
Cow position:
               
chr6:4023159-4023337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
462-643
               

               
Cow position:
               
chr6:7707191-7707367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
94, 13
               

               
Conread position:
               
462-647
               

               
Cow position:
               
chr6:48806952-48806769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
54, 41
               

               
Conread position:
               
465-625
               

               
Cow position:
               
chr6:63197102-63196941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
147, 7
               

               
Conread position:
               
467-612
               

               
Cow position:
               
chr6:33917777-33917633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
468-610
               

               
Cow position:
               
chr6:34235352-34235210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
116, 105
               

               
Conread position:
               
468-611
               

               
Cow position:
               
chr6:28477232-28477372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
468-611
               

               
Cow position:
               
chr6:37612169-37612310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
468-612
               

               
Cow position:
               
chr6:15782451-15782309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
468-612
               

               
Cow position:
               
chr6:36454533-36454390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
468-612
               

               
Cow position:
               
chr6:41655979-41655831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
63, 71
               

               
Conread position:
               
468-617
               

               
Cow position:
               
chr6:28810935-28810795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
468-626
               

               
Cow position:
               
chr6:12421228-12421067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
29, 106
               

               
Conread position:
               
468-630
               

               
Cow position:
               
chr6:53673927-53674087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
146, 44
               

               
Conread position:
               
468-636
               

               
Cow position:
               
chr6:2899503-2899337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
468-637
               

               
Cow position:
               
chr6:48572816-48572649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
135, 8
               

               
Conread position:
               
468-637
               

               
Cow position:
               
chr6:51294348-51294515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
468-639
               

               
Cow position:
               
chr6:54203994-54203820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
45, 109
               

               
Conread position:
               
468-641
               

               
Cow position:
               
chr6:47772900-47772722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
146, 103
               

               
Conread position:
               
468-644
               

               
Cow position:
               
chr6:49800330-49800502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
136, 115
               

               
Conread position:
               
468-644
               

               
Cow position:
               
chr6:54479087-54478910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
144, 53
               

               
Conread position:
               
468-644
               

               
Cow position:
               
chr6:55475318-55475492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
172, 105
               

               
Conread position:
               
468-645
               

               
Cow position:
               
chr6:20255347-20255163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
66, 44
               

               
Conread position:
               
468-645
               

               
Cow position:
               
chr6:24545677-24545857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
144, 44
               

               
Conread position:
               
468-645
               

               
Cow position:
               
chr6:28069290-28069464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
45, 107
               

               
Conread position:
               
468-645
               

               
Cow position:
               
chr6:52705514-52705337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
142, 54
               

               
Conread position:
               
468-646
               

               
Cow position:
               
chr6:38914506-38914680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
146, 11
               

               
Conread position:
               
468-646
               

               
Cow position:
               
chr6:47192461-47192283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
146, 44
               

               
Conread position:
               
469-612
               

               
Cow position:
               
chr6:30701505-30701647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
469-626
               

               
Cow position:
               
chr6:36652486-36652637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
469-626
               

               
Cow position:
               
chr6:53939028-53939186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
145, 100
               

               
Conread position:
               
469-638
               

               
Cow position:
               
chr6:25224303-25224474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
141, 104
               

               
Conread position:
               
472-643
               

               
Cow position:
               
chr6:16626016-16626185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
89, 102
               

               
Conread position:
               
475-626
               

               
Cow position:
               
chr6:31225777-31225930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
139, 98
               

               
Conread position:
               
476-623
               

               
Cow position:
               
chr6:10400342-10400198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
138, 55
               

               
Conread position:
               
477-612
               

               
Cow position:
               
chr6:39073785-39073919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
78, 118
               

               
Conread position:
               
481-642
               

               
Cow position:
               
chr6:28083946-28083777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
62, 99
               

               
Conread position:
               
483-647
               

               
Cow position:
               
chr6:1732418-1732589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
95, 90
               

               
Conread position:
               
484-626
               

               
Cow position:
               
chr6:1907599-1907739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
495-604
               

               
Cow position:
               
chr6:3545771-3545877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
505-617
               

               
Cow position:
               
chr6:28609256-28609145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               
Show alignments to all cow chromosomes.