Cow genome map


           Conread name:
           Ss1.1-Mixc-0027c05.3
        

               Conread position:
               4-143
               

               Cow position:
               chr5:23029724-23029587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               119
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               98-279
               

               Cow position:
               chr5:23029123-23028942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               174
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               276-425
               

               Cow position:
               chr5:23028137-23027988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               136
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               416-557
               

               Cow position:
               chr5:23027428-23027287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               137
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               560-680
               

               Cow position:
               chr5:23027044-23026924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               121
               

               Alignm identity:
               108
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               666-903
               

               Cow position:
               chr5:23026262-23026025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               902-1012
               

               Cow position:
               chr5:23025805-23025695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               111
               

               Alignm identity:
               106
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1011-1342
               

               Cow position:
               chr5:23024758-23024434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               237, 131
               

               Conread position:
               1338-1488
               

               Cow position:
               chr5:23024418-23024270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               116
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               10, 17
               

               Conread position:
               1503-1662
               

               Cow position:
               chr5:23024279-23024120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               147
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 34
               
Show alignments to all cow chromosomes.